ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470690.1| Oryza sativa (japonica cultivar-group), mRNA 319 5e-84
2dbj|AK104845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
3dbj|AK099328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
4dbj|AK066002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 1e-81
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 147 4e-32
6gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 147 4e-32
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
8gb|AY107038.1| Zea mays PCO088994 mRNA sequence 135 2e-28
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
10dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
11dbj|AK063528.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
12dbj|AK062652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
13dbj|AK064769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
14emb|AL109945.15|HSJ811H24 Human DNA sequence from clone RP4-811H... 48 0.030
15gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
17ref|NM_192230.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
18gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, co... 42 1.9
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
21dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22dbj|AK065538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
23dbj|AK060762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
24gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 42 1.9
25emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chro... 42 1.9
26gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome ... 40 7.3
27ref|XM_459322.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 7.3
28gb|AC131713.3| Mus musculus BAC clone RP23-193O18 from chromosom... 40 7.3
29gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosom... 40 7.3
30gb|AC125096.3| Mus musculus BAC clone RP24-181K19 from chromosom... 40 7.3
31gb|AC121908.3| Mus musculus BAC clone RP24-176J10 from chromosom... 40 7.3
32gb|AC124501.3| Mus musculus BAC clone RP23-412F10 from chromosom... 40 7.3
33gb|AC006151.4| Homo sapiens BAC clone GS1-286B23 from 7, complet... 40 7.3
34emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 7.3
35emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chr... 40 7.3
36gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, c... 40 7.3
37gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, co... 40 7.3
38gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, co... 40 7.3
39gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 7.3
40gb|AC027189.5| Homo sapiens chromosome 8, clone RP11-129J1, comp... 40 7.3
41gb|AC022605.7| Homo sapiens, clone RP11-154E16, complete sequence 40 7.3
42gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chrom... 40 7.3
43emb|BX470132.6| Zebrafish DNA sequence from clone DKEY-202L16 in... 40 7.3
44gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, com... 40 7.3
45gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, comple... 40 7.3
46gb|AC084633.1|CBRG45G04 Caenorhabditis briggsae cosmid G45G04, c... 40 7.3
47ref|XM_235434.3| PREDICTED: Rattus norvegicus gasdermin domain c... 40 7.3
48dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 7.3
49gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete ... 40 7.3
50emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chro... 40 7.3
51gb|AC154700.2| Mus musculus BAC clone RP24-344E15 from chromosom... 40 7.3 
>ref|XM_470690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1468

 Score =  319 bits (161), Expect = 5e-84
 Identities = 343/406 (84%)
 Strand = Plus / Minus

                                                                       
Query: 135 tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 950 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 891

                                                                       
Query: 195 gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
           ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 890 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 831

                                                                       
Query: 255 cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatgttctcttcgc 314
           ||||||||| ||||||| |||||| ||||| |||||||||| |||||||| ||||||| |
Sbjct: 830 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatgctctcttctc 771

                                                                       
Query: 315 aatttttcagcataatctctcccacgatggaaaaaatcagcactgtaacttgatggaatg 374
           || ||||| |  |||||| | || ||||||||||| |||||| | || || || ||||||
Sbjct: 770 aacttttcggtgtaatcttttccgcgatggaaaaagtcagcattatagctcgacggaatg 711

                                                                       
Query: 375 tttgcatctgattttgttttacccgcaagcctcctctcttgcagcannnnnnnagctgct 434
           || |||||||||||||||||||| ||||||||  ||||||| ||||       |||||| 
Sbjct: 710 ttagcatctgattttgttttaccggcaagccttttctcttgtagcatctttttagctgcc 651

                                                                       
Query: 435 tcggtttcttcaatgtttctcaatttgtactcgatgggcagctgaacttcagcgatgccg 494
           ||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| 
Sbjct: 650 tcggtctcttcaatgtttcttaatttgtactcaataggcagctgaacttcagcaatgcca 591

                                                         
Query: 495 gtggtccactgggttgagctctcctccatgttcttcttcctcacct 540
           ||||||||||| ||||||||||| |||  |||||||||||| ||||
Sbjct: 590 gtggtccactgcgttgagctctcttccgagttcttcttcctaacct 545
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>dbj|AK104845.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H03, full
           insert sequence
          Length = 1466

 Score =  319 bits (161), Expect = 5e-84
 Identities = 343/406 (84%)
 Strand = Plus / Minus

                                                                       
Query: 135 tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 953 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 894

                                                                       
Query: 195 gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
           ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 893 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 834

                                                                       
Query: 255 cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatgttctcttcgc 314
           ||||||||| ||||||| |||||| ||||| |||||||||| |||||||| ||||||| |
Sbjct: 833 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatgctctcttctc 774

                                                                       
Query: 315 aatttttcagcataatctctcccacgatggaaaaaatcagcactgtaacttgatggaatg 374
           || ||||| |  |||||| | || ||||||||||| |||||| | || || || ||||||
Sbjct: 773 aacttttcggtgtaatcttttccgcgatggaaaaagtcagcattatagctcgacggaatg 714

                                                                       
Query: 375 tttgcatctgattttgttttacccgcaagcctcctctcttgcagcannnnnnnagctgct 434
           || |||||||||||||||||||| ||||||||  ||||||| ||||       |||||| 
Sbjct: 713 ttagcatctgattttgttttaccggcaagccttttctcttgtagcatctttttagctgcc 654

                                                                       
Query: 435 tcggtttcttcaatgtttctcaatttgtactcgatgggcagctgaacttcagcgatgccg 494
           ||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| 
Sbjct: 653 tcggtctcttcaatgtttcttaatttgtactcaataggcagctgaacttcagcaatgcca 594

                                                         
Query: 495 gtggtccactgggttgagctctcctccatgttcttcttcctcacct 540
           ||||||||||| ||||||||||| |||  |||||||||||| ||||
Sbjct: 593 gtggtccactgcgttgagctctcttccgagttcttcttcctaacct 548
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>dbj|AK099328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011M11, full
           insert sequence
          Length = 1429

 Score =  319 bits (161), Expect = 5e-84
 Identities = 343/406 (84%)
 Strand = Plus / Minus

                                                                       
Query: 135 tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 907 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 848

                                                                       
Query: 195 gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
           ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 847 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 788

                                                                       
Query: 255 cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatgttctcttcgc 314
           ||||||||| ||||||| |||||| ||||| |||||||||| |||||||| ||||||| |
Sbjct: 787 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatgctctcttctc 728

                                                                       
Query: 315 aatttttcagcataatctctcccacgatggaaaaaatcagcactgtaacttgatggaatg 374
           || ||||| |  |||||| | || ||||||||||| |||||| | || || || ||||||
Sbjct: 727 aacttttcggtgtaatcttttccgcgatggaaaaagtcagcattatagctcgacggaatg 668

                                                                       
Query: 375 tttgcatctgattttgttttacccgcaagcctcctctcttgcagcannnnnnnagctgct 434
           || |||||||||||||||||||| ||||||||  ||||||| ||||       |||||| 
Sbjct: 667 ttagcatctgattttgttttaccggcaagccttttctcttgtagcatctttttagctgcc 608

                                                                       
Query: 435 tcggtttcttcaatgtttctcaatttgtactcgatgggcagctgaacttcagcgatgccg 494
           ||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| 
Sbjct: 607 tcggtctcttcaatgtttcttaatttgtactcaataggcagctgaacttcagcaatgcca 548

                                                         
Query: 495 gtggtccactgggttgagctctcctccatgttcttcttcctcacct 540
           ||||||||||| ||||||||||| |||  |||||||||||| ||||
Sbjct: 547 gtggtccactgcgttgagctctcttccgagttcttcttcctaacct 502
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>dbj|AK066002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B10, full
           insert sequence
          Length = 1507

 Score =  311 bits (157), Expect = 1e-81
 Identities = 342/406 (84%)
 Strand = Plus / Minus

                                                                       
Query: 135 tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 989 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 930

                                                                       
Query: 195 gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
           ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 929 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 870

                                                                       
Query: 255 cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatgttctcttcgc 314
           ||||||||| ||||||| |||||| ||||| |||||||||| |||||||| ||||||| |
Sbjct: 869 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatgctctcttctc 810

                                                                       
Query: 315 aatttttcagcataatctctcccacgatggaaaaaatcagcactgtaacttgatggaatg 374
           || ||||| |  |||||| | || ||||||||||| |||||| | || || || ||||||
Sbjct: 809 aacttttcggtgtaatcttttccgcgatggaaaaagtcagcattatagctcgacggaatg 750

                                                                       
Query: 375 tttgcatctgattttgttttacccgcaagcctcctctcttgcagcannnnnnnagctgct 434
           || |||||||||||||||||||| ||||||||  ||||||| ||||       |||||| 
Sbjct: 749 ttagcatctgattttgttttaccggcaagccttttctcttgtagcatctttttagctgcc 690

                                                                       
Query: 435 tcggtttcttcaatgtttctcaatttgtactcgatgggcagctgaacttcagcgatgccg 494
           ||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||||| 
Sbjct: 689 tcggtctcttcaatgtttcttaatttgtactcaataggcagctgaacttcagcaatgcca 630

                                                         
Query: 495 gtggtccactgggttgagctctcctccatgttcttcttcctcacct 540
           ||||||||||| |||||||||||  ||  |||||||||||| ||||
Sbjct: 629 gtggtccactgcgttgagctctctcccgagttcttcttcctaacct 584
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                            
Query: 135      tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
                ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 14559990 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 14560049

                                                                            
Query: 195      gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
                ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 14560050 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 14560109

                                                                  
Query: 255      cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatg 304
                ||||||||| ||||||| |||||| ||||| |||||||||| ||||||||
Sbjct: 14560110 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatg 14560159



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 105/126 (83%)
 Strand = Plus / Plus

                                                                            
Query: 339      cgatggaaaaaatcagcactgtaacttgatggaatgtttgcatctgattttgttttaccc 398
                ||||||||||| |||||| | || || || |||||||| |||||||||||||||||||| 
Sbjct: 14561374 cgatggaaaaagtcagcattatagctcgacggaatgttagcatctgattttgttttaccg 14561433

                                                                            
Query: 399      gcaagcctcctctcttgcagcannnnnnnagctgcttcggtttcttcaatgtttctcaat 458
                ||||||||  ||||||| ||||       |||||| ||||| |||||||||||||| |||
Sbjct: 14561434 gcaagccttttctcttgtagcatctttttagctgcctcggtctcttcaatgtttcttaat 14561493

                      
Query: 459      ttgtac 464
                ||||||
Sbjct: 14561494 ttgtac 14561499



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                            
Query: 462      tactcgatgggcagctgaacttcagcgatgccggtggtccactgggttgagctctcctcc 521
                ||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 14562435 tactcaataggcagctgaacttcagcaatgccagtggtccactgcgttgagctctcttcc 14562494

                                   
Query: 522      atgttcttcttcctcacct 540
                  |||||||||||| ||||
Sbjct: 14562495 gagttcttcttcctaacct 14562513
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>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
             sequence
          Length = 147130

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                         
Query: 135   tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
             ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 97721 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 97662

                                                                         
Query: 195   gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
             ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 97661 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 97602

                                                               
Query: 255   cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatg 304
             ||||||||| ||||||| |||||| ||||| |||||||||| ||||||||
Sbjct: 97601 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatg 97552



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 105/126 (83%)
 Strand = Plus / Minus

                                                                         
Query: 339   cgatggaaaaaatcagcactgtaacttgatggaatgtttgcatctgattttgttttaccc 398
             ||||||||||| |||||| | || || || |||||||| |||||||||||||||||||| 
Sbjct: 96337 cgatggaaaaagtcagcattatagctcgacggaatgttagcatctgattttgttttaccg 96278

                                                                         
Query: 399   gcaagcctcctctcttgcagcannnnnnnagctgcttcggtttcttcaatgtttctcaat 458
             ||||||||  ||||||| ||||       |||||| ||||| |||||||||||||| |||
Sbjct: 96277 gcaagccttttctcttgtagcatctttttagctgcctcggtctcttcaatgtttcttaat 96218

                   
Query: 459   ttgtac 464
             ||||||
Sbjct: 96217 ttgtac 96212



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                         
Query: 462   tactcgatgggcagctgaacttcagcgatgccggtggtccactgggttgagctctcctcc 521
             ||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 95276 tactcaataggcagctgaacttcagcaatgccagtggtccactgcgttgagctctcttcc 95217

                                
Query: 522   atgttcttcttcctcacct 540
               |||||||||||| ||||
Sbjct: 95216 gagttcttcttcctaacct 95198
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                            
Query: 135      tatcttcgcatgacacggaatttttctcgcttgcggaaacgctcaagcaacaattcatcg 194
                ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 14554965 tatctgcgcatgacacggaatttttcacgcttgcggaaacgctcaagcaacaactcatca 14555024

                                                                            
Query: 195      gtagcagcttctctatgcgctgcaggtggaccacctggattgttactatctgttggtttg 254
                ||||||||||||||  || |||||   | |||| |||||| ||||| | |  ||| ||| 
Sbjct: 14555025 gtagcagcttctctccgccctgcaccagcaccatctggatggttaccacccattgattta 14555084

                                                                  
Query: 255      cctccagtttcattagcttgtgaatcttgacctttgtacagctcaggatg 304
                ||||||||| ||||||| |||||| ||||| |||||||||| ||||||||
Sbjct: 14555085 cctccagttccattagcctgtgaaccttgatctttgtacagttcaggatg 14555134



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 105/126 (83%)
 Strand = Plus / Plus

                                                                            
Query: 339      cgatggaaaaaatcagcactgtaacttgatggaatgtttgcatctgattttgttttaccc 398
                ||||||||||| |||||| | || || || |||||||| |||||||||||||||||||| 
Sbjct: 14556349 cgatggaaaaagtcagcattatagctcgacggaatgttagcatctgattttgttttaccg 14556408

                                                                            
Query: 399      gcaagcctcctctcttgcagcannnnnnnagctgcttcggtttcttcaatgtttctcaat 458
                ||||||||  ||||||| ||||       |||||| ||||| |||||||||||||| |||
Sbjct: 14556409 gcaagccttttctcttgtagcatctttttagctgcctcggtctcttcaatgtttcttaat 14556468

                      
Query: 459      ttgtac 464
                ||||||
Sbjct: 14556469 ttgtac 14556474



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                            
Query: 462      tactcgatgggcagctgaacttcagcgatgccggtggtccactgggttgagctctcctcc 521
                ||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 14557410 tactcaataggcagctgaacttcagcaatgccagtggtccactgcgttgagctctcttcc 14557469

                                   
Query: 522      atgttcttcttcctcacct 540
                  |||||||||||| ||||
Sbjct: 14557470 gagttcttcttcctaacct 14557488
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>gb|AY107038.1| Zea mays PCO088994 mRNA sequence
          Length = 661

 Score =  135 bits (68), Expect = 2e-28
 Identities = 151/181 (83%)
 Strand = Plus / Minus

                                                                       
Query: 286 ctttgtacagctcaggatgttctcttcgcaatttttcagcataatctctcccacgatgga 345
           ||||||||| | ||||||  |||||||||||||| ||| |||| ||| | ||||| ||||
Sbjct: 191 ctttgtacaacccaggattctctcttcgcaatttctcatcatattctttgccacggtgga 132

                                                                       
Query: 346 aaaaatcagcactgtaacttgatggaatgtttgcatctgattttgttttacccgcaagcc 405
           || |||||||||| ||||||||||||||||||||||||| ||||| ||| |  |||||||
Sbjct: 131 aataatcagcactataacttgatggaatgtttgcatctggttttggttttcttgcaagcc 72

                                                                       
Query: 406 tcctctcttgcagcannnnnnnagctgcttcggtttcttcaatgtttctcaatttgtact 465
           |  ||||||||||||       ||| || ||||||||||| |||||||| ||||||||||
Sbjct: 71  ttttctcttgcagcaactttttagccgcctcggtttcttcgatgtttcttaatttgtact 12

            
Query: 466 c 466
           |
Sbjct: 11  c 11



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 150 cggaatttttctcgcttgcggaaacgctcaagcaacaattcatcggtagcagcttctct 208
           |||||||||||||| ||||||||||||| |||||  | ||||||  | |||||||||||
Sbjct: 330 cggaatttttctcgtttgcggaaacgctgaagcatgagttcatcactcgcagcttctct 272
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                          
Query: 475     gctgaacttcagcgatgccggtggtccactgggttgagctctc 517
               ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 4975415 gctgaacttcagcaatgccggtggtccactgcgttgagctctc 4975373



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 471     ggcagctgaacttcagcgatgccggtggtccactgggttgagctctcctccatgttcttc 530
               ||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||  |||||||
Sbjct: 4987913 ggcagatgaacttcagcaatgccggtgatccactgcgttgagctctcttccgagttcttc 4987854
to top
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                        
Query: 475   gctgaacttcagcgatgccggtggtccactgggttgagctctc 517
             ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 46541 gctgaacttcagcaatgccggtggtccactgcgttgagctctc 46499



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                         
Query: 471   ggcagctgaacttcagcgatgccggtggtccactgggttgagctctcctccatgttcttc 530
             ||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||  |||||||
Sbjct: 59039 ggcagatgaacttcagcaatgccggtgatccactgcgttgagctctcttccgagttcttc 58980
to top
>dbj|AK063528.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A09, full
           insert sequence
          Length = 1732

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                      
Query: 475 gctgaacttcagcgatgccggtggtccactgggttgagctctc 517
           ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 221 gctgaacttcagcaatgccggtggtccactgcgttgagctctc 179
to top
>dbj|AK062652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E08, full
           insert sequence
          Length = 536

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                      
Query: 475 gctgaacttcagcgatgccggtggtccactgggttgagctctc 517
           ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 105 gctgaacttcagcaatgccggtggtccactgcgttgagctctc 63
to top
>dbj|AK064769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A09, full
           insert sequence
          Length = 3973

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 471 ggcagctgaacttcagcgatgccggtggtccactgggttgagctctcctccatgttcttc 530
           ||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||  |||||||
Sbjct: 422 ggcagatgaacttcagcaatgccggtgatccactgcgttgagctctcttccgagttcttc 363
to top
>emb|AL109945.15|HSJ811H24 Human DNA sequence from clone RP4-811H24 on chromosome 1p34.1-34.3
             Contains the 3' end of LCK gene for lymphocyte-specific
             protein tyrosine kinase, HDAC1 gene for histone
             deacetylase 1, the MLP gene for MARCKS-like protein,
             STK22C gene for serine/threonine kinase 22C
             (spermiogenesis associated), a novel gene (FLJ43105), five
             novel genes and four CpG islands, complete sequence
          Length = 110526

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 509   tgagctctcctccatgttcttcttcctc 536
             |||||||| |||||||||||||||||||
Sbjct: 55973 tgagctcttctccatgttcttcttcctc 55946
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>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04,
              complete sequence
          Length = 133271

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 439    tttcttcaatgtttctcaattt 460
              ||||||||||||||||||||||
Sbjct: 101958 tttcttcaatgtttctcaattt 101937
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 439     tttcttcaatgtttctcaattt 460
               ||||||||||||||||||||||
Sbjct: 2426358 tttcttcaatgtttctcaattt 2426337
to top
>ref|NM_192230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1290

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 434 ttcggtttcttcaatgtttctcaatttgt 462
           ||||| ||||| |||||||||||||||||
Sbjct: 883 ttcggcttcttgaatgtttctcaatttgt 855
to top
>gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, complete sequence
          Length = 166568

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 520   ccatgttcttcttcctcacct 540
             |||||||||||||||||||||
Sbjct: 87660 ccatgttcttcttcctcacct 87640
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 434      ttcggtttcttcaatgtttctcaatttgt 462
                ||||| ||||| |||||||||||||||||
Sbjct: 29162594 ttcggcttcttgaatgtttctcaatttgt 29162566
to top
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0421H07
          Length = 158126

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 434    ttcggtttcttcaatgtttctcaatttgt 462
              ||||| ||||| |||||||||||||||||
Sbjct: 122960 ttcggcttcttgaatgtttctcaatttgt 122932
to top
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0684B02
          Length = 132470

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 434  ttcggtttcttcaatgtttctcaatttgt 462
            ||||| ||||| |||||||||||||||||
Sbjct: 8381 ttcggcttcttgaatgtttctcaatttgt 8353
to top
>dbj|AK065538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030K02, full
            insert sequence
          Length = 1892

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 434  ttcggtttcttcaatgtttctcaatttgt 462
            ||||| ||||| |||||||||||||||||
Sbjct: 1126 ttcggcttcttgaatgtttctcaatttgt 1098
to top
>dbj|AK060762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A04, full
            insert sequence
          Length = 1867

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 434  ttcggtttcttcaatgtttctcaatttgt 462
            ||||| ||||| |||||||||||||||||
Sbjct: 1116 ttcggcttcttgaatgtttctcaatttgt 1088
to top
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 514     tctcctccatgttcttcttcc 534
               |||||||||||||||||||||
Sbjct: 2736964 tctcctccatgttcttcttcc 2736984
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>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete
              sequence
          Length = 243114

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 520    ccatgttcttcttcctcacct 540
              |||||||||||||||||||||
Sbjct: 219198 ccatgttcttcttcctcacct 219218
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>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete
            sequence
          Length = 209896

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 350  atcagcactgtaacttgatggaat 373
            |||||| |||||||||||||||||
Sbjct: 4358 atcagctctgtaacttgatggaat 4381
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>ref|XM_459322.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D20702g)
           partial mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 gtttcttcaatgtttctcaa 457
           ||||||||||||||||||||
Sbjct: 569 gtttcttcaatgtttctcaa 550
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>gb|AC131713.3| Mus musculus BAC clone RP23-193O18 from chromosome 18, complete
            sequence
          Length = 220193

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 252  ttgcctccagtttcattagcttgt 275
            ||||||||||||||||||| ||||
Sbjct: 5420 ttgcctccagtttcattagattgt 5397
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>gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosome 14, complete
             sequence
          Length = 172035

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    acttactgtccagcccttcc 43
             ||||||||||||||||||||
Sbjct: 50671 acttactgtccagcccttcc 50652
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>gb|AC125096.3| Mus musculus BAC clone RP24-181K19 from chromosome 18, complete
             sequence
          Length = 154941

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   ttgcctccagtttcattagcttgt 275
             ||||||||||||||||||| ||||
Sbjct: 48287 ttgcctccagtttcattagattgt 48310
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>gb|AC121908.3| Mus musculus BAC clone RP24-176J10 from chromosome 3, complete sequence
          Length = 162777

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   caatttttcagcataatctc 333
             ||||||||||||||||||||
Sbjct: 43995 caatttttcagcataatctc 43976
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>gb|AC124501.3| Mus musculus BAC clone RP23-412F10 from chromosome 6, complete sequence
          Length = 210057

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 363    cttgatggaatgtttgcatctgattttg 390
              ||||||||||| |||||||||| |||||
Sbjct: 185934 cttgatggaatctttgcatctggttttg 185907
to top
>gb|AC006151.4| Homo sapiens BAC clone GS1-286B23 from 7, complete sequence
          Length = 136006

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    tcattagcttgtgaatcttg 283
              ||||||||||||||||||||
Sbjct: 108599 tcattagcttgtgaatcttg 108618
to top
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
               hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 438     gtttcttcaatgtttctcaa 457
               ||||||||||||||||||||
Sbjct: 1583413 gtttcttcaatgtttctcaa 1583394
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>emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chromosome 11 Contains part
              of the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila),
              complete sequence
          Length = 201133

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ggaatgtttgcatctgattt 388
              ||||||||||||||||||||
Sbjct: 159066 ggaatgtttgcatctgattt 159085
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>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence
          Length = 171605

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    tcctccatgttcttcttcct 535
              ||||||||||||||||||||
Sbjct: 154156 tcctccatgttcttcttcct 154175
to top
>gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, complete sequence
          Length = 185596

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   tcctccatgttcttcttcct 535
             ||||||||||||||||||||
Sbjct: 23372 tcctccatgttcttcttcct 23391
to top
>gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, complete sequence
          Length = 175177

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    ttcagcataatctctcccac 339
              ||||||||||||||||||||
Sbjct: 123868 ttcagcataatctctcccac 123887
to top
>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 293    cagctcaggatgttctcttcgcaatttt 320
              |||||||||||||| ||||| |||||||
Sbjct: 106142 cagctcaggatgttttcttcccaatttt 106169
to top
>gb|AC027189.5| Homo sapiens chromosome 8, clone RP11-129J1, complete sequence
          Length = 157325

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   tgcatctgattttgttttac 396
             ||||||||||||||||||||
Sbjct: 54981 tgcatctgattttgttttac 54962
to top
>gb|AC022605.7| Homo sapiens, clone RP11-154E16, complete sequence
          Length = 168875

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   tgcatctgattttgttttac 396
             ||||||||||||||||||||
Sbjct: 35633 tgcatctgattttgttttac 35652
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>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete
              sequence
          Length = 182200

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    ttcagcataatctctcccac 339
              ||||||||||||||||||||
Sbjct: 156673 ttcagcataatctctcccac 156654
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>emb|BX470132.6| Zebrafish DNA sequence from clone DKEY-202L16 in linkage group 3,
              complete sequence
          Length = 163404

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ctctcccacgatggaaaaaa 350
              ||||||||||||||||||||
Sbjct: 136259 ctctcccacgatggaaaaaa 136240
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>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence
          Length = 173919

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   tcctccatgttcttcttcct 535
             ||||||||||||||||||||
Sbjct: 71146 tcctccatgttcttcttcct 71127
to top
>gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, complete sequence
          Length = 127242

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   ggttgagctctcctccatgt 525
             ||||||||||||||||||||
Sbjct: 49074 ggttgagctctcctccatgt 49093
to top
>gb|AC084633.1|CBRG45G04 Caenorhabditis briggsae cosmid G45G04, complete sequence
          Length = 43840

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 516  tcctccatgttcttcttcct 535
            ||||||||||||||||||||
Sbjct: 7883 tcctccatgttcttcttcct 7864
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>ref|XM_235434.3| PREDICTED: Rattus norvegicus gasdermin domain containing 1
           (predicted) (Gsdmdc1_predicted), mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 498 gtccactgggttgagctctcctcc 521
           |||||||||| |||||||||||||
Sbjct: 562 gtccactgggatgagctctcctcc 539
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     attcatcggtagcagcttct 206
               ||||||||||||||||||||
Sbjct: 3504487 attcatcggtagcagcttct 3504468
to top
>gb|AC012147.7|AC012147 Mus musculus, clone RP23-191A4, complete sequence
          Length = 217034

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 363   cttgatggaatgtttgcatctgattttg 390
             ||||||||||| |||||||||| |||||
Sbjct: 21585 cttgatggaatctttgcatctggttttg 21558
to top
>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete
              sequence
          Length = 218673

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 350    atcagcactgtaacttgatggaat 373
              |||||| |||||||||||||||||
Sbjct: 104988 atcagctctgtaacttgatggaat 104965
to top
>gb|AC154700.2| Mus musculus BAC clone RP24-344E15 from chromosome 16, complete
             sequence
          Length = 199878

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   tccatgttcttcttcctcac 538
             ||||||||||||||||||||
Sbjct: 57631 tccatgttcttcttcctcac 57612


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,901,422
Number of Sequences: 3902068
Number of extensions: 4901422
Number of successful extensions: 89704
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89404
Number of HSP's gapped (non-prelim): 288
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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