Clone Information

BLAST Search Result

Clone Name	rbart28b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NOT4_YEAST (P34909) General negative regulator of transcription ...	65	2e-10
2	YAC4_SCHPO (Q09818) Putative general negative regulator of trans...	61	2e-09
3	CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (E...	59	1e-08
4	CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (E...	59	1e-08
5	ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-cont...	40	0.006
6	ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-cont...	36	0.063
7	DZIP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)...	36	0.063
8	DZIP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)...	36	0.083
9	TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger pr...	30	0.23
10	TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger prot...	30	0.29
11	TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger pr...	30	0.29
12	ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING f...	34	0.31
13	TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpre...	33	0.41
14	RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated pr...	33	0.41
15	RNF4_HUMAN (P78317) RING finger protein 4	33	0.54
16	YR311_MIMIV (Q5UPZ3) Hypothetical RING finger protein R311	33	0.54
17	RNF4_RAT (O88846) RING finger protein 4 (SNURF)	33	0.54
18	RNF4_MOUSE (Q9QZS2) RING finger protein 4	33	0.54
19	SINAL_DROME (Q8T3Y0) Probable ubiquitin ligase sina-like protein...	33	0.70
20	RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein li...	33	0.70
21	GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)	33	0.70
22	RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein li...	32	0.92
23	ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (E...	32	0.92
24	RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein li...	32	0.92
25	TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47	32	0.92
26	TRI18_MUSSP (P82457) Midline-1 (Tripartite motif protein 18)	32	0.92
27	ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)	32	1.2
28	RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 ...	32	1.2
29	ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (I...	32	1.2
30	ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0	32	1.2
31	ATL3I_ARATH (Q7X843) RING-H2 finger protein ATL3I (YGHL1-C3HC4 R...	32	1.2
32	RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 ...	32	1.2
33	TRI25_MOUSE (Q61510) Tripartite motif protein 25 (Zinc finger pr...	32	1.2
34	TRIM1_HUMAN (Q9UJV3) Midline-2 (Midline defect 2) (Tripartite mo...	32	1.6
35	TRIM1_MOUSE (Q9QUS6) Midline-2 (Midline defect 2) (Tripartite mo...	32	1.6
36	ZNFP_LYCVT (P19325) RING finger protein Z (Fragment)	31	2.0
37	TRI50_HUMAN (Q86XT4) Tripartite motif protein 50	31	2.0
38	ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P...	31	2.0
39	ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P...	31	2.0
40	ZNFP_LYCVA (P18541) RING finger protein Z	31	2.7
41	TRI10_PIG (O19085) Tripartite motif protein 10 (RING finger prot...	31	2.7
42	TRI18_MOUSE (O70583) Midline-1 (EC 6.3.2.-) (Tripartite motif pr...	31	2.7
43	AKR1_ASPFU (Q4X251) Palmitoyltransferase akr1 (EC 2.3.1.-) (Anky...	31	2.7
44	RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein li...	31	2.7
45	TRI18_RAT (P82458) Midline-1 (Tripartite motif protein 18)	31	2.7
46	TRI18_HUMAN (O15344) Midline-1 (EC 6.3.2.-) (Tripartite motif pr...	31	2.7
47	RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1...	30	3.5
48	IL1A_MOUSE (P01582) Interleukin-1 alpha precursor (IL-1 alpha)	30	4.5
49	CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic sub...	30	4.5
50	YHB0_YEAST (P38748) Hypothetical 67.5 kDa protein in PRPS4-STE20...	30	4.5
51	TRI50_PIG (Q865W2) Tripartite motif protein 50	30	4.5
52	RIP_RAT (Q4G2Y1) RPA-interacting protein	30	4.5
53	AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2...	30	4.5
54	AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform...	30	4.5
55	RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger pro...	30	4.5
56	RC3H1_MOUSE (Q4VGL6) Roquin (RING finger and C3H zinc finger pro...	30	4.5
57	RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger pro...	30	4.5
58	ZNFP_LYCVP (P19326) RING finger protein Z (Fragment)	30	5.9
59	TRI50_RAT (Q810I1) Tripartite motif protein 50	30	5.9
60	RN126_XENTR (Q6DIP3) RING finger protein 126	30	5.9
61	R126B_XENLA (Q6IRP0) RING finger protein 126-B	30	5.9
62	RNF24_MOUSE (Q8BGI1) RING finger protein 24	30	5.9
63	RN126_MOUSE (Q91YL2) RING finger protein 126	30	5.9
64	CN004_HUMAN (Q9H1B7) Protein C14orf4	29	7.8
65	RNF24_HUMAN (Q9Y225) RING finger protein 24	29	7.8
66	CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog	29	7.8
67	NIFJ_ECOLI (P52647) Probable pyruvate-flavodoxin oxidoreductase ...	29	7.8

>NOT4_YEAST (P34909) General negative regulator of transcription subunit 4|
          Length = 587

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRIL---EADARCPGCRKLYN 349
           CP+C E +D TD +F PCPCG+ +C FC+  I    E + RCP CR+ Y+
Sbjct: 33  CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82

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>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription|
           C16C9.04c
          Length = 489

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILE-ADARCPGCRKLY 352
           + CP+C E++D +D +F PC CG+ +C FC   I E  + RCP CR+LY
Sbjct: 16  MCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLY 64

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>CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3|
           ubiquitin protein ligase CNOT4) (CCR4-associated factor
           4) (Potential transcriptional repressor NOT4Hp)
          Length = 575

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -3

Query: 498 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI-LEADARCPGCRKLY 352
           P+ CP+C E L+  D +F PC CG+ +C FC  RI  + +  CP CRK Y
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60

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>CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3|
           ubiquitin protein ligase CNOT4) (CCR4-associated factor
           4) (Potential transcriptional repressor NOT4Hp)
          Length = 575

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -3

Query: 498 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI-LEADARCPGCRKLY 352
           P+ CP+C E L+  D +F PC CG+ +C FC  RI  + +  CP CRK Y
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60

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>ZN363_HUMAN (Q96PM5) RING finger and CHY zinc finger domain-containing protein|
           1 (Zinc finger protein 363) (CH-rich-interacting match
           with PLAG1) (Androgen receptor N-terminal-interacting
           protein)
          Length = 261

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 546 CWGMGMSAAHQSILSMPL-SCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCP 370
           C  M +   H+ I ++   +CPIC ED+  +       PCG  L   C++ +L+   RCP
Sbjct: 125 CLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCP 184

Query: 369 GC 364
            C
Sbjct: 185 LC 186

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>ZN363_MOUSE (Q9CR50) RING finger and CHY zinc finger domain-containing protein|
           1 (Zinc finger protein 363) (CH-rich-interacting match
           with PLAG1) (Androgen receptor N-terminal-interacting
           protein)
          Length = 261

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 492 SCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           +CPIC ED+  +       PCG  L   C++ +L+   RCP C
Sbjct: 144 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 186

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>DZIP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) (DAZ-interacting|
            protein 3) (RNA-binding ubiquitin ligase of 138 kDa)
            (hRUL138)
          Length = 1208

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 489  CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
            C IC+E+L P + S LPC   FH    C +  L     CP CR
Sbjct: 1148 CVICHENLSPENLSVLPCAHKFH--AQCIRPWLMQQGTCPTCR 1188

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>DZIP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) (DAZ-interacting|
            protein 3 homolog)
          Length = 1204

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 489  CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
            C IC+E+L P + S LPC   FH    C +  L     CP CR
Sbjct: 1144 CVICHENLSPENLSVLPCAHKFH--SQCIRPWLMQQGTCPTCR 1184

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>TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 518

 Score = 30.4 bits (67), Expect(2) = 0.23
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 528 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 358
           +AA    L +  SC +C E L       +   CG + C  C  R    LE D  CP CRK
Sbjct: 16  TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71



 Score = 22.7 bits (47), Expect(2) = 0.23
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -1

Query: 284 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 192
           ++D  LC  +  ++  FC+     +C  C +
Sbjct: 101 IRDESLCPQHHEALSLFCYEDQEAVCLICAI 131

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>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)|
          Length = 488

 Score = 30.4 bits (67), Expect(2) = 0.29
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 528 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 358
           +AA    L +  SC +C E L       +   CG + C  C  R    LE D  CP CRK
Sbjct: 16  TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71



 Score = 22.3 bits (46), Expect(2) = 0.29
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -1

Query: 284 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 192
           ++D  LC  +   +  FC+     +C  C +
Sbjct: 101 IRDESLCSQHHEPLSLFCYEDQEAVCLICAI 131

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>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 488

 Score = 30.4 bits (67), Expect(2) = 0.29
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 528 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 358
           +AA    L +  SC +C E L       +   CG + C  C  R    LE D  CP CRK
Sbjct: 16  TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71



 Score = 22.3 bits (46), Expect(2) = 0.29
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -1

Query: 284 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 192
           ++D  LC  +   +  FC+     +C  C +
Sbjct: 101 IRDESLCSQHHEPLSLFCYEDQEAVCLICAI 131

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>ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING finger protein|
           115)
          Length = 304

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 516 QSILSMPLSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           Q  + M L CP+C ED    +    LPC   FH    C    LE    CP CRK  N
Sbjct: 219 QEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSS--CIVPWLELHDTCPVCRKSLN 273

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>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in|
           astrocytoma protein) (RING finger protein 100)
          Length = 638

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = -3

Query: 504 SMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFC------HKRILEAD-----ARCPGCR 361
           S P SCPIC E L +P     +  PCG + CL C      H+    A      ARCP C+
Sbjct: 4   SGPFSCPICLEPLREP-----VTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQ 58

Query: 360 K 358
           +
Sbjct: 59  E 59

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>RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated protein 5)|
           (B-cell chronic lymphocytic leukemia tumor suppressor
           Leu5) (Putative tumor suppressor RFP2) (Tripartite motif
           protein 13) (RING finger protein 77)
          Length = 407

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = -3

Query: 510 ILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADAR----------CPGCR 361
           +L   L+CPIC    D  D   LPC   F  C  C + ILE   R          CP CR
Sbjct: 3   LLEEDLTCPICCSLFD--DPRVLPCSHNF--CKKCLEGILEGSVRNSLWRPAPFKCPTCR 58

Query: 360 K 358
           K
Sbjct: 59  K 59

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>RNF4_HUMAN (P78317) RING finger protein 4|
          Length = 190

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 495 LSCPIC---YEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           +SCPIC   Y ++       +   CG   C  C +  L+    CP CRK  N
Sbjct: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181

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>YR311_MIMIV (Q5UPZ3) Hypothetical RING finger protein R311|
          Length = 659

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           CP+CY+D    D       CG  +CL C   IL     CP C +  N
Sbjct: 502 CPVCYDD----DYIKTKLICGHTVCLTCVLNILPNSKGCPLCMEPIN 544

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>RNF4_RAT (O88846) RING finger protein 4 (SNURF)|
          Length = 194

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 495 LSCPIC---YEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           +SCPIC   Y ++       +   CG   C  C +  L+    CP CRK  N
Sbjct: 134 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 185

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>RNF4_MOUSE (Q9QZS2) RING finger protein 4|
          Length = 194

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 495 LSCPIC---YEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           +SCPIC   Y ++       +   CG   C  C +  L+    CP CRK  N
Sbjct: 134 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 185

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>SINAL_DROME (Q8T3Y0) Probable ubiquitin ligase sina-like protein CG13030 (EC|
           6.3.2.-)
          Length = 351

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 528 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           S A    L   L CP+C+  + P     + CP G  +C  C  ++      CP CR
Sbjct: 93  SGARDDFLMALLECPVCFGYIMP---PIMQCPRGHLICSTCRSKL----TICPVCR 141

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>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 418

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 513 SILSMPLSCPICYEDLD-PTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           S L   L C +C +  D P  +S     C    C  C +R L  + +CP CR
Sbjct: 22  SPLESSLRCQVCKDFFDNPVITS-----CSHTFCSLCIRRCLSTEGKCPACR 68

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>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)|
          Length = 541

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 524 QHIRVSSRCHYLAQYAMRILTQQTQASSPALAGFICASSATRGSLRRMHVA-QGAGSYTM 348
           QH+++ S      Q   RI  +Q Q +  A A     ++A  G +R  H   Q      +
Sbjct: 308 QHLKLKSEQPQQQQQQHRIKDEQQQDNRSAAALMNLVAAAEFGYMRNQHQQPQQQQQQQL 367

Query: 347 QGLQQKEEHQHQCAYP 300
              QQ ++HQHQ  +P
Sbjct: 368 HHQQQPQQHQHQQQHP 383

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>RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 427

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           L C IC + L  +    +  PCG   C  C ++ L+ +++CP C
Sbjct: 30  LRCHICKDFLKAS----VLTPCGHSFCSICIRKYLQKESKCPLC 69

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>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein|
           0) (EP0)
          Length = 410

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 507 LSMPLS---CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           LS+PL+   CPIC  D+  T++  LPC      CL C +R       CP C
Sbjct: 37  LSLPLTVMDCPICL-DVAATEAQTLPCM--HKFCLDCIQRWTLTSTACPLC 84

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>RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein ligase E3 rad-18|
           (EC 6.-.-.-) (UV radiation sensitivity protein 2)
          Length = 501

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 507 LSMPLSC--PI-----CYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           L  PL+C  P+     C+   D  DS  L   C    C  C +R L  D++CP CR
Sbjct: 18  LGTPLACLMPVEQAFRCHVCKDFYDSPMLTS-CNHTFCSLCIRRCLSVDSKCPLCR 72

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>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47|
          Length = 641

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
 Frame = -3

Query: 504 SMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFC------HKRI-----LEADARCPGCR 361
           S P SCPIC E L +P     +  PCG + CL C      H+           ARCP C+
Sbjct: 4   SGPFSCPICLEPLREP-----VTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQ 58

Query: 360 K 358
           +
Sbjct: 59  E 59

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>TRI18_MUSSP (P82457) Midline-1 (Tripartite motif protein 18)|
          Length = 667

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 364
           L   L+CPIC E L+      L  PC   LC  C  RIL +              +CP C
Sbjct: 4   LESELTCPICLELLEDP----LLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTC 59

Query: 363 R 361
           R
Sbjct: 60  R 60

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>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)|
          Length = 305

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 516 QSILSMPLSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           Q  ++  L CP+C ED    +    LPC   FH    C    LE    CP CRK  N
Sbjct: 220 QEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSS--CIVPWLELHDTCPVCRKSLN 274

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>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           CPIC++ ++    +     CG   C  C  + LE + RCP C
Sbjct: 136 CPICFDMIEEAYMT----KCGHSFCYKCIHQSLEDNNRCPKC 173

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>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell|
           protein 0)
          Length = 532

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           CPIC ED  P++ S +  PC    C  C  R +  +  CP C+
Sbjct: 8   CPICLED--PSNYS-MALPCLHAFCYVCITRWIRQNPTCPLCK 47

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>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0|
          Length = 532

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           CPIC ED  P++ S +  PC    C  C  R +  +  CP C+
Sbjct: 8   CPICLED--PSNYS-MALPCLHAFCYVCITRWIRQNPTCPLCK 47

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>ATL3I_ARATH (Q7X843) RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion|
           protein)
          Length = 349

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRK 358
           L  P  C +C  +   TD   L   C     L C    L +++ CP CR+
Sbjct: 201 LEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRR 250

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>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (mCOP1)
          Length = 733

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           CPIC++ ++    +     CG   C  C  + LE + RCP C
Sbjct: 138 CPICFDMIEEAYMT----KCGHSFCYKCIHQSLEDNNRCPKC 175

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>TRI25_MOUSE (Q61510) Tripartite motif protein 25 (Zinc finger protein 147)|
           (Estrogen-responsive finger protein) (Efp)
          Length = 634

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA---RCPGCRKLY 352
           L+  LSC +C E      ++    PCG + C  C            RCP CRK+Y
Sbjct: 7   LAEELSCSVCLELFKEPVTT----PCGHNFCTSCLDETWVVQGPPYRCPQCRKVY 57

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>TRIM1_HUMAN (Q9UJV3) Midline-2 (Midline defect 2) (Tripartite motif protein 1)|
           (Midin-2) (RING finger protein 60)
          Length = 715

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 364
           L   L+CPIC E  +      L  PC   LC  C  RIL +              +CP C
Sbjct: 4   LESELTCPICLELFEDP----LLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTC 59

Query: 363 R 361
           R
Sbjct: 60  R 60

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>TRIM1_MOUSE (Q9QUS6) Midline-2 (Midline defect 2) (Tripartite motif protein 1)|
          Length = 685

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 364
           L   L+CPIC E  +      L  PC   LC  C  RIL +              +CP C
Sbjct: 4   LESELTCPICLELFEDP----LLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTC 59

Query: 363 R 361
           R
Sbjct: 60  R 60

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>ZNFP_LYCVT (P19325) RING finger protein Z (Fragment)|
          Length = 71

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 498 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           PL+C  C++  D    SF  C    +LC  C   +L +  RCP C+
Sbjct: 28  PLNCKSCWQKFD----SFSKCH-DHYLCRHCLNLLLTSSDRCPLCK 68

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>TRI50_HUMAN (Q86XT4) Tripartite motif protein 50|
          Length = 487

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLC------LFCHKRILEADARCPGCRK 358
           L CPIC E         L   CG   C      L CH   L+A+ RCP CR+
Sbjct: 14  LQCPICLEVFKEP----LMLQCGHSYCKGCLVSLSCH---LDAELRCPVCRQ 58

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>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 492 SCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           SC IC   LD    +    PC    CL C +R LE    CP C+
Sbjct: 12  SCCIC---LDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCK 52

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>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 492 SCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           SC IC   LD    +    PC    CL C +R LE    CP C+
Sbjct: 12  SCCIC---LDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCK 52

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>ZNFP_LYCVA (P18541) RING finger protein Z|
          Length = 89

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 498 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           PLSC  C++  D    S + C    +LC  C   +L    RCP C+
Sbjct: 28  PLSCKSCWQKFD----SLVRCH-DHYLCRHCLNLLLSVSDRCPLCK 68

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>TRI10_PIG (O19085) Tripartite motif protein 10 (RING finger protein 9)|
           (B30-RING finger protein)
          Length = 482

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 528 SAAHQSILSMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFCHKRILEADARCPG 367
           SAA  S L+  ++CPIC   L +P     +   CG + C  C  R LE     PG
Sbjct: 3   SAASVSSLADEVNCPICQGTLREP-----VTIDCGHNFCCVCLTRYLEIPCLDPG 52

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>TRI18_MOUSE (O70583) Midline-1 (EC 6.3.2.-) (Tripartite motif protein 18)|
           (Midin)
          Length = 680

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 364
           L   L+CPIC E  +      L  PC   LC  C  RIL +              +CP C
Sbjct: 4   LESELTCPICLELFEDP----LLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTC 59

Query: 363 R 361
           R
Sbjct: 60  R 60

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>AKR1_ASPFU (Q4X251) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein akr1)
          Length = 738

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 209 CWFCCVLSAFGIKKCEYLNRCCAHIESPGPWYPFCTDAFRVMH 81
           C FC V      K C+  +RC A  +   PW   C  A  + H
Sbjct: 457 CVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRH 499

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>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 443

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 495 LSCPICYEDLD-PTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           L C +C +  D P  +S     C    C  C +R L  + +CP CR
Sbjct: 28  LRCQVCKDFFDNPVITS-----CSHTFCSLCIRRCLSTEGKCPTCR 68

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>TRI18_RAT (P82458) Midline-1 (Tripartite motif protein 18)|
          Length = 667

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 364
           L   L+CPIC E  +      L  PC   LC  C  RIL +              +CP C
Sbjct: 4   LESELTCPICLELFEDP----LLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTC 59

Query: 363 R 361
           R
Sbjct: 60  R 60

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>TRI18_HUMAN (O15344) Midline-1 (EC 6.3.2.-) (Tripartite motif protein 18)|
           (Putative transcription factor XPRF) (Midin) (RING
           finger protein 59) (Midline 1 RING finger protein)
          Length = 667

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = -3

Query: 507 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 364
           L   L+CPIC E  +      L  PC   LC  C  RIL +              +CP C
Sbjct: 4   LESELTCPICLELFEDP----LLLPCAHSLCFNCAHRILVSHCATNESVESITAFQCPTC 59

Query: 363 R 361
           R
Sbjct: 60  R 60

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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
            (Helicase-like protein NHL)
          Length = 1400

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -3

Query: 498  PLSCPICYEDLDPTDSSFLPCP-CGFHLCLFCHKRILEADARCPGC 364
            PLS     +     D     CP C F  C  C +R L+A   CP C
Sbjct: 1237 PLSAGCVCQGCGAEDVVPFQCPACDFQRCQACWQRHLQASRMCPAC 1282

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>IL1A_MOUSE (P01582) Interleukin-1 alpha precursor (IL-1 alpha)|
          Length = 270

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 108 KRIPRSWRLYMGTASIQIFTFLYTKSRQYATKPAYPTVTCKAELRHRAIIAFTQPSVLD 284
           K +P + +L  G+ +  IF +    S+ Y T  AYP +    + + R  +A   PS+ D
Sbjct: 208 KELPETPKLITGSETDLIFFWKSINSKNYFTSAAYPELFIATKEQSRVHLARGLPSMTD 266

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>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 489 CPICYED--LDPTDSSFLPC-PCGFHLCLFCHK-RILEADARCPGCR 361
           C IC +D  L  T + F+ C  CGF LC  C++    +    CP C+
Sbjct: 33  CQICGDDVGLTKTGNVFVACNECGFPLCQSCYEYERKDGSQCCPQCK 79

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>YHB0_YEAST (P38748) Hypothetical 67.5 kDa protein in PRPS4-STE20 intergenic|
           region
          Length = 585

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 492 SCPICYEDLDPTDSSFLPCPC--GFHL-CLFCHKRILEADARCPGCR 361
           +CP+C E +D   +  +  PC   FH  CL   K     ++RCP CR
Sbjct: 239 TCPVCLERMDSETTGLVTIPCQHTFHCQCLNKWK-----NSRCPVCR 280

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>TRI50_PIG (Q865W2) Tripartite motif protein 50|
          Length = 486

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCH---KRILEADARCPGCRK 358
           L CP+C E         L   CG   C  C     R L+++ RCP CR+
Sbjct: 14  LQCPVCLEVFKEP----LMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQ 58

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>RIP_RAT (Q4G2Y1) RPA-interacting protein|
          Length = 219

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 498 PLSCPICYEDLDPTDSSFLPCPCGFHL 418
           PL CP+C +      +S + CPCG H+
Sbjct: 134 PLICPVCIKYNLRIMNSVVTCPCGLHI 160

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>AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2.19) (AMF|
           receptor)
          Length = 643

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           C IC++ +       LPC   FH    C +  LE D  CP CR   N
Sbjct: 341 CAICWDSMQAARK--LPCGHLFHNS--CLRSWLEQDTSCPTCRMSLN 383

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>AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2 (EC 6.3.2.-)|
           (AMF receptor) (gp78)
          Length = 643

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 349
           C IC++ +       LPC   FH    C +  LE D  CP CR   N
Sbjct: 341 CAICWDSMQAARK--LPCGHLFHNS--CLRSWLEQDTSCPTCRMSLN 383

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>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1114

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI 394
           LSCPIC +  D T    +   CG  +C  C  ++
Sbjct: 12  LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKL 45

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>RC3H1_MOUSE (Q4VGL6) Roquin (RING finger and C3H zinc finger protein 1)|
           (Sanroque protein)
          Length = 1130

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI 394
           LSCPIC +  D T    +   CG  +C  C  ++
Sbjct: 12  LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKL 45

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>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1133

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI 394
           LSCPIC +  D T    +   CG  +C  C  ++
Sbjct: 12  LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKL 45

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>ZNFP_LYCVP (P19326) RING finger protein Z (Fragment)|
          Length = 51

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 498 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 361
           PL+C  C++  D    S + C    +LC  C   +L +  RCP C+
Sbjct: 8   PLNCKSCWQKFD----SLVRCH-DHYLCRHCLNLLLTSSDRCPLCK 48

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>TRI50_RAT (Q810I1) Tripartite motif protein 50|
          Length = 483

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 358
           L CPIC E         L   CG   C  C   +   L+++ RCP CR+
Sbjct: 14  LQCPICLEVFKEP----LMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQ 58

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>RN126_XENTR (Q6DIP3) RING finger protein 126|
          Length = 311

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRK 358
           L CP+C ED    +S   LPC   FH    C    LE    CP CRK
Sbjct: 225 LECPVCKEDYTVGESVRQLPCNHLFH--NDCIIPWLEQHDTCPVCRK 269

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>R126B_XENLA (Q6IRP0) RING finger protein 126-B|
          Length = 312

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRK 358
           L CP+C ED    +S   LPC   FH    C    LE    CP CRK
Sbjct: 226 LECPVCKEDYTVGESVRQLPCNHLFH--NDCIIPWLEQHDTCPVCRK 270

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>RNF24_MOUSE (Q8BGI1) RING finger protein 24|
          Length = 148

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           C +C ED  P D   + CPC       C  + LE    CP C
Sbjct: 78  CAVCLEDFKPRDELGI-CPCKHAFHRKCLVKWLEVRKVCPLC 118

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>RN126_MOUSE (Q91YL2) RING finger protein 126|
          Length = 313

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 495 LSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRK 358
           L CP+C ED    +S   LPC   FH    C    LE    CP CRK
Sbjct: 229 LECPVCKEDYALGESVRQLPCNHLFHDS--CIVPWLEQHDSCPVCRK 273

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>CN004_HUMAN (Q9H1B7) Protein C14orf4|
          Length = 796

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 504 SMPLSCPICYEDLDPTDSSFLPCPC--GFHLCLFCHKRILEA-----DARCPGCRK 358
           S PL C IC+E L+  D+ F+ CP       C  C +  ++A     +  CP   K
Sbjct: 710 SGPLCCTICHERLE--DTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 763

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>RNF24_HUMAN (Q9Y225) RING finger protein 24|
          Length = 148

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 489 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 364
           C +C ED  P D   + CPC       C  + LE    CP C
Sbjct: 78  CAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRKVCPLC 118

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>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog|
          Length = 775

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 504 SMPLSCPICYEDLDPTDSSFLPCPC--GFHLCLFCHKRILEA-----DARCPGCRK 358
           S PL C IC+E L+  D+ F+ CP       C  C +  ++A     +  CP   K
Sbjct: 689 SGPLCCTICHERLE--DTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 742

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>NIFJ_ECOLI (P52647) Probable pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)|
          Length = 1174

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 59   PLQSPATYALHGMHQYKKDTKVLETLYGHSIYSNIHISLYQKQTIR 196
            PL +   +  HG  + +KD  V   +YGH   + I +     QT++
Sbjct: 1006 PLGAVTKFGEHGKRKARKDLGVSMMMYGHVYVAQISLGAQLNQTVK 1051


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,324,345
Number of Sequences: 219361
Number of extensions: 1607766
Number of successful extensions: 4905
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 4710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4890
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result