Clone Name | rbart28b06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 381 catccgcctcaaggatcctcttgtggcagaagaggcacagatgaaacccgcaagggcagg 440 |||| |||||||| || |||||||||||||| || ||||||||||| ||||| ||||| | Sbjct: 22385106 catctgcctcaagaattctcttgtggcagaacagacacagatgaaaaccgcaggggcaag 22385165 Query: 441 ggaggaagcttgagtctgttgggtcaagatcctcatagcatattgggca 489 ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 22385166 ggaggaagcttgaatctgttggatcaaggtcctcgtagcatatagggca 22385214 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 272 tagtgtcttggacccatgctacaagaacggga 303 |||| |||||||||||| |||||||||||||| Sbjct: 22384982 tagtatcttggacccatactacaagaacggga 22385013
>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06 Length = 156989 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 381 catccgcctcaaggatcctcttgtggcagaagaggcacagatgaaacccgcaagggcagg 440 |||| |||||||| || |||||||||||||| || ||||||||||| ||||| ||||| | Sbjct: 143750 catctgcctcaagaattctcttgtggcagaacagacacagatgaaaaccgcaggggcaag 143809 Query: 441 ggaggaagcttgagtctgttgggtcaagatcctcatagcatattgggca 489 ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 143810 ggaggaagcttgaatctgttggatcaaggtcctcgtagcatatagggca 143858 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 272 tagtgtcttggacccatgctacaagaacggga 303 |||| |||||||||||| |||||||||||||| Sbjct: 143626 tagtatcttggacccatactacaagaacggga 143657
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_A05 Length = 113326 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 381 catccgcctcaaggatcctcttgtggcagaagaggcacagatgaaacccgcaagggcagg 440 |||| |||||||| || |||||||||||||| || ||||||||||| ||||| ||||| | Sbjct: 41325 catctgcctcaagaattctcttgtggcagaacagacacagatgaaaaccgcaggggcaag 41384 Query: 441 ggaggaagcttgagtctgttgggtcaagatcctcatagcatattgggca 489 ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 41385 ggaggaagcttgaatctgttggatcaaggtcctcgtagcatatagggca 41433 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 272 tagtgtcttggacccatgctacaagaacggga 303 |||| |||||||||||| |||||||||||||| Sbjct: 41201 tagtatcttggacccatactacaagaacggga 41232
>dbj|AK119275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-B07, full insert sequence Length = 3265 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Minus Query: 381 catccgcctcaaggatcctcttgtggcagaagaggcacagatgaaacccgcaagggcagg 440 |||| |||||||| || |||||||||||||| || ||||||||||| ||||| ||||| | Sbjct: 1200 catctgcctcaagaattctcttgtggcagaacagacacagatgaaaaccgcaggggcaag 1141 Query: 441 ggaggaagcttgagtctgttgggtcaagatcctcatagcatattgggca 489 ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 1140 ggaggaagcttgaatctgttggatcaaggtcctcgtagcatatagggca 1092 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 272 tagtgtcttggacccatgctacaagaacggga 303 |||| |||||||||||| |||||||||||||| Sbjct: 1324 tagtatcttggacccatactacaagaacggga 1293
>dbj|AK068477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153F14, full insert sequence Length = 1481 Score = 113 bits (57), Expect = 6e-22 Identities = 96/109 (88%) Strand = Plus / Minus Query: 381 catccgcctcaaggatcctcttgtggcagaagaggcacagatgaaacccgcaagggcagg 440 |||| |||||||| || |||||||||||||| || ||||||||||| ||||| ||||| | Sbjct: 1094 catctgcctcaagaattctcttgtggcagaacagacacagatgaaaaccgcaggggcaag 1035 Query: 441 ggaggaagcttgagtctgttgggtcaagatcctcatagcatattgggca 489 ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct: 1034 ggaggaagcttgaatctgttggatcaaggtcctcgtagcatatagggca 986 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 272 tagtgtcttggacccatgctacaagaacggga 303 |||| |||||||||||| |||||||||||||| Sbjct: 1218 tagtatcttggacccatactacaagaacggga 1187
>gb|AC136839.20| Medicago truncatula clone mth2-13n2, complete sequence Length = 121995 Score = 60.0 bits (30), Expect = 8e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 357 gcttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagag 414 ||||||||||||| || ||||| |||||| |||||| |||||||||||||| ||||| Sbjct: 110 gcttcctgcacccaggacaacgagcatcctgctcaagaatcctcttgtggcaaaagag 53
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 265 cacagcctagtgtcttggacccatgctacaagaacgggatag 306 |||| |||||| ||||||||||||||||||||| |||||||| Sbjct: 121173 cacaacctagtatcttggacccatgctacaagaccgggatag 121214 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 121233 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 121292 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 121293 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 121352 Query: 478 gcatattgg 486 ||||||||| Sbjct: 121353 gcatattgg 121361 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 158 aatattcacatttctttataccaaaa 183 |||||||||||||||||||||||||| Sbjct: 121066 aatattcacatttctttataccaaaa 121091
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 265 cacagcctagtgtcttggacccatgctacaagaacgggatag 306 |||| |||||| ||||||||||||||||||||| |||||||| Sbjct: 15025 cacaacctagtatcttggacccatgctacaagaccgggatag 15066 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 15085 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 15144 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 15145 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 15204 Query: 478 gcatattgg 486 ||||||||| Sbjct: 15205 gcatattgg 15213 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 158 aatattcacatttctttataccaaaa 183 |||||||||||||||||||||||||| Sbjct: 14918 aatattcacatttctttataccaaaa 14943
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 265 cacagcctagtgtcttggacccatgctacaagaacgggatag 306 |||| |||||| ||||||||||||||||||||| |||||||| Sbjct: 23124833 cacaacctagtatcttggacccatgctacaagaccgggatag 23124874 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 23124893 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 23124952 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 23124953 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 23125012 Query: 478 gcatattgg 486 ||||||||| Sbjct: 23125013 gcatattgg 23125021 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 158 aatattcacatttctttataccaaaa 183 |||||||||||||||||||||||||| Sbjct: 23124726 aatattcacatttctttataccaaaa 23124751
>dbj|AK102269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088P15, full insert sequence Length = 1478 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 265 cacagcctagtgtcttggacccatgctacaagaacgggatag 306 |||| |||||| ||||||||||||||||||||| |||||||| Sbjct: 1172 cacaacctagtatcttggacccatgctacaagaccgggatag 1131 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Minus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 1112 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 1053 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 1052 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 993 Query: 478 gcatattgg 486 ||||||||| Sbjct: 992 gcatattgg 984 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 158 aatattcacatttctttataccaaaa 183 |||||||||||||||||||||||||| Sbjct: 1279 aatattcacatttctttataccaaaa 1254
>dbj|AK068918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169C17, full insert sequence Length = 2262 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 265 cacagcctagtgtcttggacccatgctacaagaacgggatag 306 |||| |||||| ||||||||||||||||||||| |||||||| Sbjct: 1172 cacaacctagtatcttggacccatgctacaagaccgggatag 1131 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Minus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 1112 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 1053 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 1052 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 993 Query: 478 gcatattgg 486 ||||||||| Sbjct: 992 gcatattgg 984 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 158 aatattcacatttctttataccaaaa 183 |||||||||||||||||||||||||| Sbjct: 1279 aatattcacatttctttataccaaaa 1254
>dbj|AK064338.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G12, full insert sequence Length = 1477 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 265 cacagcctagtgtcttggacccatgctacaagaacgggatag 306 |||| |||||| ||||||||||||||||||||| |||||||| Sbjct: 1171 cacaacctagtatcttggacccatgctacaagaccgggatag 1130 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Minus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 1111 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 1052 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 1051 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 992 Query: 478 gcatattgg 486 ||||||||| Sbjct: 991 gcatattgg 983 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 158 aatattcacatttctttataccaaaa 183 |||||||||||||||||||||||||| Sbjct: 1278 aatattcacatttctttataccaaaa 1253
>ref|XM_472773.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Minus Query: 358 cttcctgcaccctgggcaacgtgcatccgcctcaaggatcctcttgtggcagaagaggca 417 |||||||||||| ||||| ||| |||| || || |||||| | |||||||||||||| || Sbjct: 972 cttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagaca 913 Query: 418 cagatgaaacccgcaagggcaggggaggaagcttgagtctgttgggtcaagatcctcata 477 ||| ||| ||||| || || ||||||||||||||| ||||||||||||| | Sbjct: 912 caggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgca 853 Query: 478 gcatattgg 486 ||||||||| Sbjct: 852 gcatattgg 844 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 271 ctagtgtcttggacccatgctacaagaacgggatag 306 ||||| ||||||||||||||||||||| |||||||| Sbjct: 1026 ctagtatcttggacccatgctacaagaccgggatag 991
>emb|BX006319.1|CNS08D1F Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA10CH08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 910 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 313 tggtgctggtgctcctccttctgctgc 339 |||||||||||| |||||||||||||| Sbjct: 830 tggtgctggtgcgcctccttctgctgc 856
>ref|XM_317157.2| Anopheles gambiae str. PEST ENSANGP00000023465 (ENSANGG00000015739), partial mRNA Length = 1670 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 313 tggtgctggtgctcctccttctgctgc 339 |||||||||||| |||||||||||||| Sbjct: 839 tggtgctggtgcgcctccttctgctgc 813
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 ggataggcgcactggtgctggtg 323 ||||||||||||||||||||||| Sbjct: 1166891 ggataggcgcactggtgctggtg 1166869
>ref|XM_662454.1| Cryptosporidium hominis TU502 dynein intermediate chain 2, cytosolic (Chro.10178) partial mRNA Length = 2034 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 attatatatgatctcacaaact 43 |||||||||||||||||||||| Sbjct: 1717 attatatatgatctcacaaact 1738
>ref|XM_627994.1| Cryptosporidium parvum Iowa II dynein intermediate chain (cgd1_1540), partial mRNA Length = 2034 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 attatatatgatctcacaaact 43 |||||||||||||||||||||| Sbjct: 1717 attatatatgatctcacaaact 1738
>emb|AL354931.13| Human DNA sequence from clone RP11-535B18 on chromosome 9, complete sequence Length = 126815 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 ttctgctgcagaccctgcatt 351 ||||||||||||||||||||| Sbjct: 18390 ttctgctgcagaccctgcatt 18370
>emb|BX034204.1|CNS08YK0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA50AB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 770 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 ctctccaatctccagcaacat 80 ||||||||||||||||||||| Sbjct: 203 ctctccaatctccagcaacat 223
>emb|BX005311.8| Zebrafish DNA sequence from clone DKEY-45J13 in linkage group 6, complete sequence Length = 40451 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 acatatgcattacacggaatg 97 ||||||||||||||||||||| Sbjct: 36445 acatatgcattacacggaatg 36465
>gb|AC159917.3| Aotus nancymaae clone CH258-526A6, complete sequence Length = 165172 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 146219 caaatattcacatttcttta 146238
>ref|XM_478691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1338 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tcctcttgtggcagaagagg 415 |||||||||||||||||||| Sbjct: 471 tcctcttgtggcagaagagg 490
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 895134 caaatattcacatttcttta 895153
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 940082 caaatattcacatttcttta 940101
>gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence Length = 208928 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 196575 caaatattcacatttcttta 196594
>gb|AC181988.3| Cavia porcellus clone CH234-334G9, complete sequence Length = 98474 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tcctcttgtggcagaagagg 415 |||||||||||||||||||| Sbjct: 71329 tcctcttgtggcagaagagg 71348
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 tgctggtgctcctccttctgctgc 339 ||||| |||||||||||||||||| Sbjct: 13268350 tgctgctgctcctccttctgctgc 13268327
>gb|AC106873.3| Homo sapiens BAC clone RP11-374M7 from 7, complete sequence Length = 99596 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 93803 caaatattcacatttcttta 93822
>gb|AY318871.1| Canarypox virus strain ATCC VR-111, complete genome Length = 359853 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aaaagcagacaatacgcaac 199 |||||||||||||||||||| Sbjct: 199697 aaaagcagacaatacgcaac 199716
>emb|CR954257.1| Anopheles gambiae Pen-1 region; BAC clone 32F02 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 137277 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cacaaactgtaacaacaaaa 55 |||||||||||||||||||| Sbjct: 27549 cacaaactgtaacaacaaaa 27568
>gb|AC138729.3| Pongo pygmaeus clone CH253-321H12, complete sequence Length = 189877 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 50091 caaatattcacatttcttta 50110
>ref|XM_809692.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509601.150) partial mRNA Length = 1470 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ggtgctcctccttctgctgc 339 |||||||||||||||||||| Sbjct: 925 ggtgctcctccttctgctgc 906
>ref|XM_816232.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053510629.350) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 ctggtgctggtgctcctccttctg 335 ||||||||| |||||||||||||| Sbjct: 353 ctggtgctgttgctcctccttctg 376
>gb|AC127382.4| Homo sapiens BAC clone RP11-1380M11 from UL, complete sequence Length = 179507 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttggacccatgctacaagaa 298 |||||||||||||||||||| Sbjct: 20453 ttggacccatgctacaagaa 20434
>ref|XM_725773.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00294) partial mRNA Length = 942 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 catctattcaaatattcaca 167 |||||||||||||||||||| Sbjct: 596 catctattcaaatattcaca 615
>ref|XM_735344.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301300.00.0) partial mRNA Length = 720 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 catctattcaaatattcaca 167 |||||||||||||||||||| Sbjct: 449 catctattcaaatattcaca 468
>emb|AL357559.16| Human DNA sequence from clone RP11-393M18 on chromosome 1 Contains a novel pseudogene, a farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) (FDPS) pseudogene, a novel gene (LOC339476) and the 5' end of a solute carrier family 4 (anion exchanger) member 1 adaptor protein (SLC4A1AP) pseudogene, complete sequence Length = 190912 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 acatttctttataccaaaagcagacaat 192 ||||||||||||||||| |||| ||||| Sbjct: 92082 acatttctttataccaacagcaaacaat 92109
>emb|Z46259.1|SCRPD3COS S.cerevisiae FY1676 RPD3 gene Length = 40050 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 caaggatcctcttgtggcagaaga 413 ||||||||||||||||| |||||| Sbjct: 28073 caaggatcctcttgtggaagaaga 28050
>gb|AC069063.22| Homo sapiens 3 BAC RP11-58D2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112126 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 tagccttcacacagcctagt 275 |||||||||||||||||||| Sbjct: 54507 tagccttcacacagcctagt 54526
>gb|AC148205.3| Callicebus moloch clone LB5-314H24, complete sequence Length = 153386 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 15745 caaatattcacatttcttta 15764
>gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, complete sequence Length = 215928 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tctgatgtgctgcactcata 532 |||||||||||||||||||| Sbjct: 128791 tctgatgtgctgcactcata 128772
>gb|AC099771.9| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-72621, Complete Sequence, complete sequence Length = 256933 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 aatattcacatttctttataccaa 181 |||| ||||||||||||||||||| Sbjct: 229784 aataatcacatttctttataccaa 229761
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 gctcctccttctgctgcagaccct 346 |||||||||||||| ||||||||| Sbjct: 40256 gctcctccttctgccgcagaccct 40279
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 gctcctccttctgctgcagaccct 346 |||||||||||||| ||||||||| Sbjct: 100239 gctcctccttctgccgcagaccct 100262
>emb|BX510305.5| Zebrafish DNA sequence from clone CH211-107P11 in linkage group 23, complete sequence Length = 156938 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acagtaacatgcaaagcaga 235 |||||||||||||||||||| Sbjct: 39809 acagtaacatgcaaagcaga 39828
>gb|AC166601.4| Nomascus leucogenys leucogenys clone CH271-401M10, complete sequence Length = 184404 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 181265 caaatattcacatttcttta 181284
>gb|AC100822.2| Homo sapiens chromosome 8, clone RP11-654O1, complete sequence Length = 186380 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 cactggtgctggtgctcctccttctgct 337 ||||||||||||||||||| || ||||| Sbjct: 23857 cactggtgctggtgctcctactgctgct 23830
>gb|AC152398.7| Mus musculus chromosome 18, clone RP23-458M2, complete sequence Length = 180614 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 337 tgcagaccctgcattgtatagcttcctg 364 ||||||||||||||| ||||| |||||| Sbjct: 97518 tgcagaccctgcattttatagtttcctg 97545
>gb|AC146884.3| Callithrix jacchus clone CH259-252N7, complete sequence Length = 219392 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 64744 caaatattcacatttcttta 64763
>gb|AC018501.9| Homo sapiens chromosome 3 clone RP11-283K15 map 3p, complete sequence Length = 202070 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttggacccatgctacaagaa 298 |||||||||||||||||||| Sbjct: 14167 ttggacccatgctacaagaa 14148
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tcctcttgtggcagaagagg 415 |||||||||||||||||||| Sbjct: 22258280 tcctcttgtggcagaagagg 22258261
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 tgctggtgctcctccttctgctgc 339 ||||| |||||||||||||||||| Sbjct: 13265125 tgctgctgctcctccttctgctgc 13265102
>gb|AC007821.4|AC007821 Drosophila melanogaster, chromosome 3R, region 99F-100A, BAC clone BACR48I02, complete sequence Length = 163741 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 acaaactgtaacaacaaaag 56 |||||||||||||||||||| Sbjct: 94123 acaaactgtaacaacaaaag 94142
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 812903 caaatattcacatttcttta 812922
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 780544 caaatattcacatttcttta 780563
>gb|AC064846.5| Homo sapiens BAC clone RP11-59C11 from 2, complete sequence Length = 169988 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 atactctgatgtgctgcact 528 |||||||||||||||||||| Sbjct: 132202 atactctgatgtgctgcact 132221
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tcctcttgtggcagaagagg 415 |||||||||||||||||||| Sbjct: 63526 tcctcttgtggcagaagagg 63507
>emb|AL935144.11| Zebrafish DNA sequence from clone CH211-89B14 in linkage group 23, complete sequence Length = 155322 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tcctctccaatctccagcaa 77 |||||||||||||||||||| Sbjct: 95872 tcctctccaatctccagcaa 95891
>dbj|AK120618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152B16, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tcctcttgtggcagaagagg 415 |||||||||||||||||||| Sbjct: 434 tcctcttgtggcagaagagg 453
>emb|Z71589.1|SCYNL313C S.cerevisiae chromosome XIV reading frame ORF YNL313c Length = 3072 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 caaggatcctcttgtggcagaaga 413 ||||||||||||||||| |||||| Sbjct: 1558 caaggatcctcttgtggaagaaga 1535
>gb|AE003775.2| Drosophila melanogaster chromosome 3R, section 113 of 118 of the complete sequence Length = 236096 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 acaaactgtaacaacaaaag 56 |||||||||||||||||||| Sbjct: 110778 acaaactgtaacaacaaaag 110797
>gb|DQ331371.1| Synthetic construct Saccharomyces cerevisiae clone FLH202765.01X YNL313C gene, complete sequence Length = 2715 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 caaggatcctcttgtggcagaaga 413 ||||||||||||||||| |||||| Sbjct: 1251 caaggatcctcttgtggaagaaga 1274
>gb|AC165378.3| Colobus guereza clone CH272-371N6, complete sequence Length = 202455 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 23821 caaatattcacatttcttta 23840
>gb|AC130654.2| Mus musculus strain C57BL/6J chromosome 18 clone rp23-410i12, complete sequence Length = 186254 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 agaggatactctgatgtgct 523 |||||||||||||||||||| Sbjct: 154129 agaggatactctgatgtgct 154110
>gb|AC090955.3| Homo sapiens chromosome 3 clone RP11-622A14 map 3p, complete sequence Length = 209168 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttggacccatgctacaagaa 298 |||||||||||||||||||| Sbjct: 149147 ttggacccatgctacaagaa 149128
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 caaatattcacatttcttta 175 |||||||||||||||||||| Sbjct: 930297 caaatattcacatttcttta 930316
>emb|AL732564.12| Mouse DNA sequence from clone RP23-442G9 on chromosome 2, complete sequence Length = 211657 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 312 ctggtgctggtgctcctccttctgctgc 339 |||||||||||||| ||||| ||||||| Sbjct: 206760 ctggtgctggtgctgctcctgctgctgc 206733
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 tgctggtgctcctccttctgctgc 339 ||||| |||||||||||||||||| Sbjct: 51491 tgctgctgctcctccttctgctgc 51514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,102,959 Number of Sequences: 3902068 Number of extensions: 5102959 Number of successful extensions: 105233 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104848 Number of HSP's gapped (non-prelim): 385 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)