Clone Name | rbart28a12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... | 28 | 7.9 | 2 | RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance ... | 28 | 7.9 |
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>SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +1 Query: 10 E*KFYRLESNQKCITPHIMHNTPSYLVQYYPPNISGKV 123 E + Y+ + TP + N Y + PPNI+GK+ Sbjct: 17 EDRIYKWWEEEGFFTPKVDKNKKPYTIMMPPPNITGKL 54
>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas| syringae protein 3) Length = 926 Score = 27.7 bits (60), Expect = 7.9 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%) Frame = -2 Query: 153 FRGCA-LWKLFYFARYVW 103 +R CA +W+ F+F RY+W Sbjct: 92 YRSCAKIWRAFHFPRYMW 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,573,145 Number of Sequences: 219361 Number of extensions: 818228 Number of successful extensions: 1792 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1792 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)