ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 7.9
2RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance ... 28 7.9

>SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 10  E*KFYRLESNQKCITPHIMHNTPSYLVQYYPPNISGKV 123
           E + Y+    +   TP +  N   Y +   PPNI+GK+
Sbjct: 17  EDRIYKWWEEEGFFTPKVDKNKKPYTIMMPPPNITGKL 54



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>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas|
           syringae protein 3)
          Length = 926

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 153 FRGCA-LWKLFYFARYVW 103
           +R CA +W+ F+F RY+W
Sbjct: 92  YRSCAKIWRAFHFPRYMW 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,573,145
Number of Sequences: 219361
Number of extensions: 818228
Number of successful extensions: 1792
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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