Clone Name | rbart28a11 |
---|---|
Clone Library Name | barley_pub |
>DROS_DROSI (Q6XMH8) Drosocin precursor| Length = 64 Score = 32.3 bits (72), Expect = 0.62 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 287 YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 YSPRP+ H RP R + + H A + IRPPP+ Sbjct: 27 YSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61
>DROS_DROME (P36193) Drosocin precursor| Length = 64 Score = 32.3 bits (72), Expect = 0.62 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 287 YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 YSPRP+ H RP R + + H A + IRPPP+ Sbjct: 27 YSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61
>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 32.0 bits (71), Expect = 0.81 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +2 Query: 2 VLQLSCFV*SALQHGADQNHTCRL--FCLSAGRYHYCTC 112 VL +SC +ALQ G H C+ C++AG H+C C Sbjct: 1100 VLNVSCKA-AALQKGVPVEHLCQHSGICINAGNTHHCQC 1137
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 32.0 bits (71), Expect = 0.81 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +2 Query: 2 VLQLSCFV*SALQHGADQNHTCRL--FCLSAGRYHYCTC 112 VL +SC +ALQ G H C+ C++AG H+C C Sbjct: 1098 VLNVSCKA-AALQKGVPVEHLCQHSGICINAGNTHHCQC 1135
>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein| (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95) Length = 868 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 296 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 183 TP+Y P+ PT P PAP +T+P RPPP Sbjct: 724 TPAYQSSPAGGHAPTPPTPAP-RTMPPTKPQPPARPPP 760
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 180 PS TP+ SPRP P+ +PAP+ T PV A +++ P PV Sbjct: 902 PSTTPT-SPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPV 945
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 P+ TP++SP P + P P P LP+ ++ PPPV Sbjct: 311 PTPTPTFSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPV 352
>IF1C_SOYBN (Q94KR7) Translation initiation factor IF-1, chloroplast precursor| Length = 138 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 296 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 TP PR H P+ + +P+ P H S + PPP+ Sbjct: 7 TPILHPRYCHHPTPSCTQFSPLALPPFHRTLSFLAPPPL 45
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 377 RSGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAP 234 R+ A RP P+ PS PRP+ +P PRPAP Sbjct: 93 RAAAPRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPA-PRPAP 139
>SC6A5_MOUSE (Q761V0) Sodium- and chloride-dependent glycine transporter 2| (GlyT2) (GlyT-2) (Solute carrier family 6 member 5) Length = 799 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 275 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 P D P PR +P Q LP A+ ++PP V Sbjct: 22 PGHRDSPRAPRTSPEQDLPAEAPAATVQPPRV 53
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -2 Query: 293 PSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 183 P+Y+P P P P+P P P S + PPP Sbjct: 72 PTYTPSPKPTPPPATPKPTPPTYTPSPKPKSPVYPPP 108
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 180 PS TP+ SPRP P+ +P P+ T PV A +++ P PV Sbjct: 930 PSTTPT-SPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPV 973
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 281 PRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPVCMS 171 P P+ P P PAP Q AA+ RP PV +S Sbjct: 765 PAPAPPSTPPGPEPAPAQPAAPRAAAAQARPRPVAVS 801
>PGCB_BOVIN (Q28062) Brevican core protein precursor| Length = 912 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Frame = -2 Query: 293 PSYSPRPSRHDRPT*PRPA-----PIQTLPVHNAASLIRPPP 183 P SP P +D P PRP P +TLP +L PPP Sbjct: 518 PGVSPPP--YDEPEAPRPPRVLGPPTKTLPTPREGNLASPPP 557
>PROK2_RAT (Q8R413) Prokineticin-2 precursor (PK2)| Length = 107 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 172 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 267 D GGG+ ++W S+ I GQVG SC Sbjct: 36 DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67
>AMYG_CANAL (O74254) Glucoamylase 1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 946 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +1 Query: 112 HIDCTHA*LSIRTQSDWS-QYDIHTGGGLISDAALWTGSV*IGAGRGQ--VGRSCLDGRG 282 H THA T +D + +YDIH GLI + A++ + I + +GRS G G Sbjct: 560 HDLATHAISPNATHADGTVEYDIHNIYGLIQERAIYEALLEIHPNKRPFIIGRSSFAGSG 619 Query: 283 LYDG 294 Y G Sbjct: 620 KYMG 623
>SC6A5_RAT (P58295) Sodium- and chloride-dependent glycine transporter 2| (GlyT2) (GlyT-2) (Solute carrier family 6 member 5) Length = 799 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 275 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 P D P PR +P Q LP A+ ++PP V Sbjct: 22 PGHRDSPRAPRTSPEQDLPAAAPAAAVQPPRV 53
>PROK2_MOUSE (Q9QXU7) Prokineticin-2 precursor (PK2) (Protein Bv8 homolog)| Length = 128 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 172 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 267 D GGG+ ++W S+ I GQVG SC Sbjct: 36 DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67
>GUNH_CLOTM (P16218) Endoglucanase H precursor (EC 3.2.1.4) (EGH)| (Endo-1,4-beta-glucanase) (Cellulase H) Length = 900 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*PRPAP 234 P PSYSP+PS RPT P P Sbjct: 631 PGTYPSYSPKPSPTPRPTKPPVTP 654
>GANA_ASPAC (P48842) Arabinogalactan endo-1,4-beta-galactosidase precursor (EC| 3.2.1.89) (Endo-1,4-beta-galactanase) (Galactanase) Length = 350 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -1 Query: 417 ALETI---GGLRRAIPEIWGGAADGELQLDHNVEKNKSMRA 304 ALETI G+ +W +DG LD+N+E K ++A Sbjct: 47 ALETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKA 87
>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)| Length = 864 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 293 PSYSPRPSRHDRPT*PRPAPIQTLPVHNAAS 201 PS PRPSR PT RPA + P N+ S Sbjct: 209 PSRPPRPSRPPPPTPRRPASVNGSPSTNSDS 239
>ILVD_BACSK (Q5WEM9) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 554 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +1 Query: 142 IRTQSDWSQYDIHTGGGLISDAALWTGSV*IGAGRGQVGRSCLDGRGLYDGV 297 I SD+S D+H GG+ AA+ + +GA +G R + G+ LY+ V Sbjct: 304 ISPASDYSMDDVHKAGGV---AAIMKELIEMGAVKGD--RITITGKSLYENV 350 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,962,175 Number of Sequences: 219361 Number of extensions: 1228118 Number of successful extensions: 3444 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3432 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)