ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart28a09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for putative glycosyltransferase (sf2 gene) Length = 863 Score = 428 bits (216), Expect = e-117 Identities = 216/216 (100%) Strand = Plus / Minus Query: 300 gtcgctctccatcaacctctggatggactcggcgattacctcgccggcgataacctcgtg 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 837 gtcgctctccatcaacctctggatggactcggcgattacctcgccggcgataacctcgtg 778 Query: 360 ggcctcgacgcccgacgcgtagtccttggcgccgatgctgacgccgaccttgagaagctc 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 777 ggcctcgacgcccgacgcgtagtccttggcgccgatgctgacgccgaccttgagaagctc 718 Query: 420 caccacgagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcac 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 717 caccacgagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcac 658 Query: 480 gccggcgctcacggcctccagcaccgagttccagcc 515 |||||||||||||||||||||||||||||||||||| Sbjct: 657 gccggcgctcacggcctccagcaccgagttccagcc 622 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 68 ctagattccatggcgtcatggctgtcgtcg 97 ||||||||||||||||||||||||| |||| Sbjct: 863 ctagattccatggcgtcatggctgtggtcg 834
>gb|AY109290.1| Zea mays PCO107526 mRNA sequence Length = 829 Score = 141 bits (71), Expect = 3e-30 Identities = 92/99 (92%) Strand = Plus / Minus Query: 403 ccgaccttgagaagctccaccacgagcttctcgttgttgaactggtccgcgtaccgcggc 462 ||||||||||| |||||||| || ||||||||||||| ||||||||| |||||||||||| Sbjct: 403 ccgaccttgagcagctccactaccagcttctcgttgtagaactggtcggcgtaccgcggc 344 Query: 463 cacgtgaccatcggcacgccggcgctcacggcctccagc 501 ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 343 cacgtcaccataggcacgccggcgctcacggcctccagc 305
>dbj|AK102671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102B03, full insert sequence Length = 1675 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 380 agtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagcttctcgttgt 439 ||||||||| || |||||||| ||||||||||||| |||||| | ||||||||||||| Sbjct: 1347 agtccttggaccccatgctgaccccgaccttgagaacctccacgatgagcttctcgttga 1288 Query: 440 tgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctcca 499 ||||||||| |||||||||||||| || ||||| || |||||||||||||||||||||| Sbjct: 1287 agaactggtcggcgtaccgcggccaggtcaccattgggacgccggcgctcacggcctcca 1228 Query: 500 gcaccgagttcca 512 || ||||||||| Sbjct: 1227 gcgtcgagttcca 1215 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 185 tccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacccaacct 244 ||||||| ||| ||||| ||||||||||||| |||||||| |||| ||| || || ||| Sbjct: 1557 tccggcgtgccatcaacgcgtccatcagccgtccaacgtcgtcgtgcgacgaaccgccct 1498 Query: 245 tctcca 250 |||||| Sbjct: 1497 tctcca 1492
>ref|XM_463383.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1485 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 396 gctgacgccgaccttgagaagctccaccacgagcttctcgttgttgaactggtccgcgta 455 |||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| ||||| Sbjct: 1242 gctgaccccgaccttgagaacctccacgatgagcttctcgttgaagaactggtcggcgta 1183 Query: 456 ccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || ||||| || |||||||||||||||||||||||| ||||||||| Sbjct: 1182 ccgcggccaggtcaccattgggacgccggcgctcacggcctccagcgtcgagttcca 1126 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 185 tccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacccaacct 244 ||||||| ||| ||||| ||||||||||||| |||||||| |||| ||| || || ||| Sbjct: 1468 tccggcgtgccatcaacgcgtccatcagccgtccaacgtcgtcgtgcgacgaaccgccct 1409 Query: 245 tctcca 250 |||||| Sbjct: 1408 tctcca 1403
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 396 gctgacgccgaccttgagaagctccaccacgagcttctcgttgttgaactggtccgcgta 455 |||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| ||||| Sbjct: 23453516 gctgaccccgaccttgagaacctccacgatgagcttctcgttgaagaactggtcggcgta 23453457 Query: 456 ccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || ||||| || |||||||||||||||||||||||| ||||||||| Sbjct: 23453456 ccgcggccaggtcaccattgggacgccggcgctcacggcctccagcgtcgagttcca 23453400 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 380 agtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagcttctcgttgt 439 ||||| |||| |||| || |||||| ||| ||| | |||||| ||| || ||||||||| Sbjct: 23461075 agtccctggccccgacgccgacgcccaccccgagcacctccacgacgtgcctctcgttgt 23461016 Query: 440 tgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctcca 499 ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 23461015 agaactggtccgagtaccgcggccatgtcaccatcggcacgccggcgctcacggcctcca 23460956 Query: 500 gcaccgagttcca 512 || ||||||||| Sbjct: 23460955 gcgtcgagttcca 23460943 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 25593457 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 25593398 Query: 486 gctcacggcctccagcaccgagttcca 512 | |||||||||||||| ||||||||| Sbjct: 25593397 ggtcacggcctccagcgtcgagttcca 25593371 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 372 cgacgcgtagtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagctt 431 ||||||| | ||| ||||||||| | |||||||||||| || | ||| || | |||||| Sbjct: 25610842 cgacgcgaactccctggcgccgaccccgacgccgaccttaagcatctcaacgatgagctt 25610783 Query: 432 ctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcac 491 |||||||| ||||||||| | ||| |||||||||| |||||||||||||| |||||||| Sbjct: 25610782 ctcgttgtagaactggtcggtgtaacgcggccacgccaccatcggcacgccagcgctcac 25610723 Query: 492 ggcctccagcaccgagttcca 512 ||| |||||||| |||||||| Sbjct: 25610722 ggcttccagcacggagttcca 25610702 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| |||||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 25593721 gacggagccccggcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 25593662 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 25593661 cccacccttctccagcgcgcccctcgccttcacgcc 25593626 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 185 tccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacccaacct 244 ||||||| ||| ||||| ||||||||||||| |||||||| |||| ||| || || ||| Sbjct: 23453742 tccggcgtgccatcaacgcgtccatcagccgtccaacgtcgtcgtgcgacgaaccgccct 23453683 Query: 245 tctcca 250 |||||| Sbjct: 23453682 tctcca 23453677 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 205 tccatcagccgcccaacgtcatcgtacgaagacccaaccttctcc 249 |||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 23461265 tccatcagccgcccgacgtcgtcgtacgacgacccgcccttctcc 23461221 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 474 cggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||| ||||||||| |||| ||||||||| Sbjct: 34137919 cggcacgccggcgaacacggcctcgagcagcgagttcca 34137881 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggc 485 ||||||||| ||||||||| | ||||||||||||||| Sbjct: 28841733 tccgcgtacagcggccacgccagcatcggcacgccggc 28841770 Score = 42.1 bits (21), Expect = 1.8 Identities = 87/109 (79%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacc 238 ||||||||||||||||| ||| | | |||| |||||| || | || ||||| ||||| | Sbjct: 25611050 cggagctccggcgagccatcagctcatccaacagccgtccggcatcgtcgtaggaagagc 25610991 Query: 239 caaccttctccaccgccctccttgccttcacgccgaggtccttggcctt 287 | ||| || |||||| ||||| |||||| ||| ||| |||||| |||| Sbjct: 25610990 cgccctccttcaccgcgctcctcgccttctcgcggagctccttgacctt 25610942
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 396 gctgacgccgaccttgagaagctccaccacgagcttctcgttgttgaactggtccgcgta 455 |||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| ||||| Sbjct: 16821 gctgaccccgaccttgagaacctccacgatgagcttctcgttgaagaactggtcggcgta 16762 Query: 456 ccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || ||||| || |||||||||||||||||||||||| ||||||||| Sbjct: 16761 ccgcggccaggtcaccattgggacgccggcgctcacggcctccagcgtcgagttcca 16705 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 380 agtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagcttctcgttgt 439 ||||| |||| |||| || |||||| ||| ||| | |||||| ||| || ||||||||| Sbjct: 24380 agtccctggccccgacgccgacgcccaccccgagcacctccacgacgtgcctctcgttgt 24321 Query: 440 tgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctcca 499 ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 24320 agaactggtccgagtaccgcggccatgtcaccatcggcacgccggcgctcacggcctcca 24261 Query: 500 gcaccgagttcca 512 || ||||||||| Sbjct: 24260 gcgtcgagttcca 24248 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 185 tccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacccaacct 244 ||||||| ||| ||||| ||||||||||||| |||||||| |||| ||| || || ||| Sbjct: 17047 tccggcgtgccatcaacgcgtccatcagccgtccaacgtcgtcgtgcgacgaaccgccct 16988 Query: 245 tctcca 250 |||||| Sbjct: 16987 tctcca 16982 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 205 tccatcagccgcccaacgtcatcgtacgaagacccaaccttctcc 249 |||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 24570 tccatcagccgcccgacgtcgtcgtacgacgacccgcccttctcc 24526
>dbj|AK063325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H06, full insert sequence Length = 1962 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 396 gctgacgccgaccttgagaagctccaccacgagcttctcgttgttgaactggtccgcgta 455 |||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| ||||| Sbjct: 1332 gctgaccccgaccttgagaacctccacgatgagcttctcgttgaagaactggtcggcgta 1273 Query: 456 ccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || ||||| || |||||||||||||||||||||||| ||||||||| Sbjct: 1272 ccgcggccaggtcaccattgggacgccggcgctcacggcctccagcgtcgagttcca 1216 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 185 tccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacccaacct 244 ||||||| ||| ||||| ||||||||||||| |||||||| |||| ||| || || ||| Sbjct: 1558 tccggcgtgccatcaacgcgtccatcagccgtccaacgtcgtcgtgcgacgaaccgccct 1499 Query: 245 tctcca 250 |||||| Sbjct: 1498 tctcca 1493
>ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1476 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1203 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 1144 Query: 486 gctcacggcctccagcaccgagttcca 512 | |||||||||||||| ||||||||| Sbjct: 1143 ggtcacggcctccagcgtcgagttcca 1117 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| |||||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 1467 gacggagccccggcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 1408 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 1407 cccacccttctccagcgcgcccctcgccttcacgcc 1372
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 40263 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 40204 Query: 486 gctcacggcctccagcaccgagttcca 512 | |||||||||||||| ||||||||| Sbjct: 40203 ggtcacggcctccagcgtcgagttcca 40177 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 372 cgacgcgtagtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagctt 431 ||||||| | ||| ||||||||| | |||||||||||| || | ||| || | |||||| Sbjct: 57648 cgacgcgaactccctggcgccgaccccgacgccgaccttaagcatctcaacgatgagctt 57589 Query: 432 ctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcac 491 |||||||| ||||||||| | ||| |||||||||| |||||||||||||| |||||||| Sbjct: 57588 ctcgttgtagaactggtcggtgtaacgcggccacgccaccatcggcacgccagcgctcac 57529 Query: 492 ggcctccagcaccgagttcca 512 ||| |||||||| |||||||| Sbjct: 57528 ggcttccagcacggagttcca 57508 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| |||||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 40527 gacggagccccggcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 40468 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 40467 cccacccttctccagcgcgcccctcgccttcacgcc 40432 Score = 42.1 bits (21), Expect = 1.8 Identities = 87/109 (79%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacc 238 ||||||||||||||||| ||| | | |||| |||||| || | || ||||| ||||| | Sbjct: 57856 cggagctccggcgagccatcagctcatccaacagccgtccggcatcgtcgtaggaagagc 57797 Query: 239 caaccttctccaccgccctccttgccttcacgccgaggtccttggcctt 287 | ||| || |||||| ||||| |||||| ||| ||| |||||| |||| Sbjct: 57796 cgccctccttcaccgcgctcctcgccttctcgcggagctccttgacctt 57748
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 121060 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 121001 Query: 486 gctcacggcctccagcaccgagttcca 512 | |||||||||||||| ||||||||| Sbjct: 121000 ggtcacggcctccagcgtcgagttcca 120974 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 372 cgacgcgtagtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagctt 431 ||||||| | ||| ||||||||| | |||||||||||| || | ||| || | |||||| Sbjct: 138445 cgacgcgaactccctggcgccgaccccgacgccgaccttaagcatctcaacgatgagctt 138386 Query: 432 ctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcac 491 |||||||| ||||||||| | ||| |||||||||| |||||||||||||| |||||||| Sbjct: 138385 ctcgttgtagaactggtcggtgtaacgcggccacgccaccatcggcacgccagcgctcac 138326 Query: 492 ggcctccagcaccgagttcca 512 ||| |||||||| |||||||| Sbjct: 138325 ggcttccagcacggagttcca 138305 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| |||||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 121324 gacggagccccggcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 121265 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 121264 cccacccttctccagcgcgcccctcgccttcacgcc 121229 Score = 42.1 bits (21), Expect = 1.8 Identities = 87/109 (79%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacc 238 ||||||||||||||||| ||| | | |||| |||||| || | || ||||| ||||| | Sbjct: 138653 cggagctccggcgagccatcagctcatccaacagccgtccggcatcgtcgtaggaagagc 138594 Query: 239 caaccttctccaccgccctccttgccttcacgccgaggtccttggcctt 287 | ||| || |||||| ||||| |||||| ||| ||| |||||| |||| Sbjct: 138593 cgccctccttcaccgcgctcctcgccttctcgcggagctccttgacctt 138545
>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full insert sequence Length = 1896 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1300 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 1241 Query: 486 gctcacggcctccagcaccgagttcca 512 | |||||||||||||| ||||||||| Sbjct: 1240 ggtcacggcctccagcgtcgagttcca 1214 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| |||||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 1564 gacggagccccggcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 1505 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 1504 cccacccttctccagcgcgcccctcgccttcacgcc 1469
>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full insert sequence Length = 1896 Score = 117 bits (59), Expect = 4e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1300 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 1241 Query: 486 gctcacggcctccagcaccgagttcca 512 | |||||||||||||| ||||||||| Sbjct: 1240 ggtcacggcctccagcgtcgagttcca 1214 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| || ||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 1564 gacggagcccctgcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 1505 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 1504 cccacccttctccagcgcgcccctcgccttcacgcc 1469
>ref|NM_192249.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1491 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 372 cgacgcgtagtccttggcgccgatgctgacgccgaccttgagaagctccaccacgagctt 431 ||||||| | ||| ||||||||| | |||||||||||| || | ||| || | |||||| Sbjct: 1272 cgacgcgaactccctggcgccgaccccgacgccgaccttaagcatctcaacgatgagctt 1213 Query: 432 ctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcac 491 |||||||| ||||||||| | ||| |||||||||| |||||||||||||| |||||||| Sbjct: 1212 ctcgttgtagaactggtcggtgtaacgcggccacgccaccatcggcacgccagcgctcac 1153 Query: 492 ggcctccagcaccgagttcca 512 ||| |||||||| |||||||| Sbjct: 1152 ggcttccagcacggagttcca 1132 Score = 42.1 bits (21), Expect = 1.8 Identities = 87/109 (79%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaagacc 238 ||||||||||||||||| ||| | | |||| |||||| || | || ||||| ||||| | Sbjct: 1480 cggagctccggcgagccatcagctcatccaacagccgtccggcatcgtcgtaggaagagc 1421 Query: 239 caaccttctccaccgccctccttgccttcacgccgaggtccttggcctt 287 | ||| || |||||| ||||| |||||| ||| ||| |||||| |||| Sbjct: 1420 cgccctccttcaccgcgctcctcgccttctcgcggagctccttgacctt 1372
>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene region Length = 16710 Score = 97.6 bits (49), Expect = 3e-17 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 426 gagcttctcgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggc 485 |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 5312 gagcttctcgttgtagaactggtcggcgtaccgtggccacgtcaccatcggcacgccggc 5371 Query: 486 gctcac-ggcctccagc 501 | |||| |||||||||| Sbjct: 5372 ggtcacgggcctccagc 5388 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 177 gacggagctccggcgagccgtcaacacgtccatcagccgcccaacgtcatcgtacgaaga 236 |||||||| |||||||||| ||||| |||||||||| ||||| ||||||||||| || Sbjct: 5048 gacggagccccggcgagccatcaactcgtccatcagaattccaacatcatcgtacgacga 5107 Query: 237 cccaaccttctccaccgccctccttgccttcacgcc 272 |||| ||||||||| ||| | ||| ||||||||||| Sbjct: 5108 cccacccttctccagcgcgcccctcgccttcacgcc 5143
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||||||| |||| ||||||| ||||| Sbjct: 8052338 tccgcgtacagcggccacggcaccatcggcacgccggcggacacgctctccagcgccgag 8052279 Query: 508 ttcca 512 ||||| Sbjct: 8052278 ttcca 8052274 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 458 gcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || |||||||||||||||| |||| ||||||| ||||||||| Sbjct: 8075372 gcggccacgcgatcatcggcacgccggcggccacgctctccagcgtcgagttcca 8075426 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 458 gcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || |||||||||||||| | |||| ||||||| |||||||||| Sbjct: 8033382 gcggccacgcgatcatcggcacgccggaggacacgctctccagcgccgagttcca 8033436 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Plus Query: 451 gcgtaccgcggccacgtgaccatcggcacgccgg 484 |||||| ||||||||| || |||||||||||||| Sbjct: 8017571 gcgtacagcggccacgcgatcatcggcacgccgg 8017604 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 |||||||||||||||||| | | ||||||| |||||||||||| Sbjct: 31806232 catcggcacgccggcgcttatgctctccagcgtcgagttccagcc 31806276
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||||||| |||| ||||||| ||||| Sbjct: 40531 tccgcgtacagcggccacggcaccatcggcacgccggcggacacgctctccagcgccgag 40472 Query: 508 ttcca 512 ||||| Sbjct: 40471 ttcca 40467 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 458 gcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || |||||||||||||||| |||| ||||||| ||||||||| Sbjct: 63565 gcggccacgcgatcatcggcacgccggcggccacgctctccagcgtcgagttcca 63619 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 458 gcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || |||||||||||||| | |||| ||||||| |||||||||| Sbjct: 21575 gcggccacgcgatcatcggcacgccggaggacacgctctccagcgccgagttcca 21629 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Plus Query: 451 gcgtaccgcggccacgtgaccatcggcacgccgg 484 |||||| ||||||||| || |||||||||||||| Sbjct: 5764 gcgtacagcggccacgcgatcatcggcacgccgg 5797
>gb|AY108318.1| Zea mays PCO131281 mRNA sequence Length = 1204 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 |||||||| ||||||||| |||||||||||||| || |||| |||||||| |||||| Sbjct: 772 tccgcgtagagcggccacgccaccatcggcacgcccgccatcaccgcctccaggaccgag 713 Query: 508 ttccagcc 515 |||||||| Sbjct: 712 ttccagcc 705
>ref|XM_474134.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||| |||||| ||| ||||||||||||||||||||||| Sbjct: 1137 catcggcaccccggcggccaccgcctccagcaccgagttccagcc 1093
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||| |||||| ||| ||||||||||||||||||||||| Sbjct: 33179543 catcggcaccccggcggccaccgcctccagcaccgagttccagcc 33179587 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 464 acgtgaccatcggcacgccggcgct 488 ||||| ||||||||||||||||||| Sbjct: 22323131 acgtgtccatcggcacgccggcgct 22323155 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 11448324 ctccagcaccgagttccagcc 11448344
>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence Length = 118971 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||| |||||| ||| ||||||||||||||||||||||| Sbjct: 70032 catcggcaccccggcggccaccgcctccagcaccgagttccagcc 70076
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence Length = 165745 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||| |||||| ||| ||||||||||||||||||||||| Sbjct: 62192 catcggcaccccggcggccaccgcctccagcaccgagttccagcc 62236
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 accatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 19935172 accatcggcacgccggcgctcaccgcctccaccgtcgagttcca 19935129 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 accatcggcacgccggcgct 488 |||||||||||||||||||| Sbjct: 19920571 accatcggcacgccggcgct 19920552
>dbj|AP006173.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0217C03 Length = 58309 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 accatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 42258 accatcggcacgccggcgctcaccgcctccaccgtcgagttcca 42215 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 accatcggcacgccggcgct 488 |||||||||||||||||||| Sbjct: 27657 accatcggcacgccggcgct 27638
>dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0498F03 Length = 54025 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 accatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 9320 accatcggcacgccggcgctcaccgcctccaccgtcgagttcca 9277
>ref|XM_483068.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1467 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 434 cgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacgg 493 ||||| |||||||||| ||| | |||||||| || ||||| |||||||||| || | Sbjct: 1225 cgttggtgaactggtcggcgctcatcggccacgcgagcatcgccacgccggcggcgaccg 1166 Query: 494 cctccagcaccgagttccagcc 515 |||| ||||||||||||||||| Sbjct: 1165 cctcgagcaccgagttccagcc 1144
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 434 cgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacgg 493 ||||| |||||||||| ||| | |||||||| || ||||| |||||||||| || | Sbjct: 24137212 cgttggtgaactggtcggcgctcatcggccacgcgagcatcgccacgccggcggcgaccg 24137153 Query: 494 cctccagcaccgagttccagcc 515 |||| ||||||||||||||||| Sbjct: 24137152 cctcgagcaccgagttccagcc 24137131
>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0605H02 Length = 175547 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 434 cgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacgg 493 ||||| |||||||||| ||| | |||||||| || ||||| |||||||||| || | Sbjct: 3551 cgttggtgaactggtcggcgctcatcggccacgcgagcatcgccacgccggcggcgaccg 3492 Query: 494 cctccagcaccgagttccagcc 515 |||| ||||||||||||||||| Sbjct: 3491 cctcgagcaccgagttccagcc 3470
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 434 cgttgttgaactggtccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacgg 493 ||||| |||||||||| ||| | |||||||| || ||||| |||||||||| || | Sbjct: 90698 cgttggtgaactggtcggcgctcatcggccacgcgagcatcgccacgccggcggcgaccg 90639 Query: 494 cctccagcaccgagttccagcc 515 |||| ||||||||||||||||| Sbjct: 90638 cctcgagcaccgagttccagcc 90617
>ref|NM_190981.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 474 cggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||| ||||||||| |||| ||||||||| Sbjct: 1086 cggcacgccggcgaacacggcctcgagcagcgagttcca 1048
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 74 tccatggcgtcatggctgtcgtc 96 ||||||||||||||||||||||| Sbjct: 1808032 tccatggcgtcatggctgtcgtc 1808010
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034E02 Length = 165497 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 474 cggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||| ||||||||| |||| ||||||||| Sbjct: 134397 cggcacgccggcgaacacggcctcgagcagcgagttcca 134359
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 458 gcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||| || |||||||||||||| | |||| ||||||| |||||||||| Sbjct: 156797 gcggccacgcgatcatcggcacgccggaggacacgctctccagcgccgagttcca 156851 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Plus Query: 451 gcgtaccgcggccacgtgaccatcggcacgccgg 484 |||||| ||||||||| || |||||||||||||| Sbjct: 140986 gcgtacagcggccacgcgatcatcggcacgccgg 141019
>ref|XM_314825.2| Anopheles gambiae str. PEST ENSANGP00000011098 (ENSANGG00000008609), partial mRNA Length = 5397 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 353 cctcgtgggcctcgacgcccgac 375 ||||||||||||||||||||||| Sbjct: 272 cctcgtgggcctcgacgcccgac 294
>dbj|AK105954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D05, full insert sequence Length = 1695 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 474 cggcacgccggcgctcacggcctccagcaccgagttcca 512 ||||||||||||| ||||||||| |||| ||||||||| Sbjct: 1155 cggcacgccggcgaacacggcctcgagcagcgagttcca 1117
>ref|XM_463421.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggc 485 ||||||||| ||||||||| | ||||||||||||||| Sbjct: 1184 tccgcgtacagcggccacgccagcatcggcacgccggc 1147
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 79 ggcgtcatggctgtcgtcgtagcaaagatc 108 |||||||| ||||||||||| ||||||||| Sbjct: 2126954 ggcgtcatagctgtcgtcgtcgcaaagatc 2126925
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_H09 Length = 110086 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggc 485 ||||||||| ||||||||| | ||||||||||||||| Sbjct: 59776 tccgcgtacagcggccacgccagcatcggcacgccggc 59813
>dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114N14, full insert sequence Length = 1727 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggc 485 ||||||||| ||||||||| | ||||||||||||||| Sbjct: 1245 tccgcgtacagcggccacgccagcatcggcacgccggc 1208
>gb|AY576273.1| Bacteriophage Phi JL001, complete genome Length = 63649 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Minus Query: 269 cgccgaggtccttggccttcttctggatgccgtc 302 |||||| |||||||||||||| ||||| |||||| Sbjct: 19692 cgccgaagtccttggccttctgctggaggccgtc 19659
>ref|XM_467864.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1597 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 |||||||||||||||||| | | ||||||| |||||||||||| Sbjct: 1206 catcggcacgccggcgcttatgctctccagcgtcgagttccagcc 1162
>ref|XM_462658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 464 acgtgaccatcggcacgccggcgct 488 ||||| ||||||||||||||||||| Sbjct: 293 acgtgtccatcggcacgccggcgct 317
>ref|NM_186324.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1688 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 1165 ctccagcaccgagttccagcc 1145
>ref|XM_478278.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1641 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 309 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 368 Query: 508 ttcca 512 ||||| Sbjct: 369 ttcca 373
>ref|XM_507364.1| PREDICTED Oryza sativa (japonica cultivar-group), P0430F03.25 mRNA Length = 1747 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 410 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 469 Query: 508 ttcca 512 ||||| Sbjct: 470 ttcca 474
>ref|XM_506357.2| PREDICTED Oryza sativa (japonica cultivar-group), P0430F03.25 mRNA Length = 1790 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 366 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 425 Query: 508 ttcca 512 ||||| Sbjct: 426 ttcca 430
>ref|XM_478277.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1686 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 1241 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 1182 Query: 508 ttcca 512 ||||| Sbjct: 1181 ttcca 1177
>ref|XM_506356.1| PREDICTED Oryza sativa (japonica cultivar-group), P0430F03.24 mRNA Length = 1709 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 1271 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 1212 Query: 508 ttcca 512 ||||| Sbjct: 1211 ttcca 1207
>ref|NM_186788.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||||||||||| ||| ||||||| |||||||||||| Sbjct: 1170 catcggcacgccggcgcagacgctctccagcgtcgagttccagcc 1126
>ref|XM_471501.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1464 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 1152 ctccagcaccgagttccagcc 1132
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 atggcgtcatggctgtcgtcg 97 ||||||||||||||||||||| Sbjct: 1189124 atggcgtcatggctgtcgtcg 1189144
>gb|AE011982.1| Xanthomonas axonopodis pv. citri str. 306, section 360 of 469 of the complete genome Length = 13732 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 atggcgtcatggctgtcgtcg 97 ||||||||||||||||||||| Sbjct: 3315 atggcgtcatggctgtcgtcg 3295
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 22545241 ctccagcaccgagttccagcc 22545221 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 18985582 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 18985523 Query: 508 ttcca 512 ||||| Sbjct: 18985522 ttcca 18985518 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||||||||||| ||| ||||||| |||||||||||| Sbjct: 7872167 catcggcacgccggcgcagacgctctccagcgtcgagttccagcc 7872123 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 ||||||||| ||||||||| |||||||||||||| Sbjct: 19008451 tccgcgtacagcggccacggcgccatcggcacgccg 19008416 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 |||||||| ||||||||| ||||||||||||||| Sbjct: 18993455 tccgcgtagagcggccacggcaccatcggcacgccg 18993420
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 22950245 ctccagcaccgagttccagcc 22950265
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 cttcacgccgaggtccttggc 284 ||||||||||||||||||||| Sbjct: 7675374 cttcacgccgaggtccttggc 7675354
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 125067 ctccagcaccgagttccagcc 125087
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 16730 ctccagcaccgagttccagcc 16750
>dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1720_F04 Length = 105227 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 88729 ctccagcaccgagttccagcc 88709
>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0523A04 Length = 149049 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 ||||||||||||||||| ||| ||||||| |||||||||||| Sbjct: 121165 catcggcacgccggcgcagacgctctccagcgtcgagttccagcc 121121
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 87567 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 87508 Query: 508 ttcca 512 ||||| Sbjct: 87507 ttcca 87503 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 ||||||||| ||||||||| |||||||||||||| Sbjct: 110436 tccgcgtacagcggccacggcgccatcggcacgccg 110401 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 |||||||| ||||||||| ||||||||||||||| Sbjct: 95440 tccgcgtagagcggccacggcaccatcggcacgccg 95405
>dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_E08 Length = 119926 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 25623 ctccagcaccgagttccagcc 25603
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 |||||||||||||||||| | | ||||||| |||||||||||| Sbjct: 102030 catcggcacgccggcgcttatgctctccagcgtcgagttccagcc 102074
>dbj|AK120786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010M08, full insert sequence Length = 1770 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 464 acgtgaccatcggcacgccggcgct 488 ||||| ||||||||||||||||||| Sbjct: 525 acgtgtccatcggcacgccggcgct 549
>dbj|AK109494.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A01, full insert sequence Length = 1610 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 464 acgtgaccatcggcacgccggcgct 488 ||||| ||||||||||||||||||| Sbjct: 347 acgtgtccatcggcacgccggcgct 371
>dbj|AK107291.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B11, full insert sequence Length = 1688 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 1165 ctccagcaccgagttccagcc 1145
>dbj|AK106005.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A05, full insert sequence Length = 1686 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 1241 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 1182 Query: 508 ttcca 512 ||||| Sbjct: 1181 ttcca 1177
>dbj|AK105785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G10, full insert sequence Length = 1709 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 1271 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 1212 Query: 508 ttcca 512 ||||| Sbjct: 1211 ttcca 1207
>dbj|AK101518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046I03, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 365 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 424 Query: 508 ttcca 512 ||||| Sbjct: 425 ttcca 429
>dbj|AK099344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028A15, full insert sequence Length = 1640 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 308 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 367 Query: 508 ttcca 512 ||||| Sbjct: 368 ttcca 372
>emb|BX510908.8| Mouse DNA sequence from clone RP23-264F3 on chromosome 2, complete sequence Length = 80804 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 aaaaagaaagttcaaagctgc 133 ||||||||||||||||||||| Sbjct: 66724 aaaaagaaagttcaaagctgc 66704
>dbj|AK066301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M20, full insert sequence Length = 1596 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttccagcc 515 |||||||||||||||||| | | ||||||| |||||||||||| Sbjct: 1205 catcggcacgccggcgcttatgctctccagcgtcgagttccagcc 1161
>dbj|AK064324.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F04, full insert sequence Length = 1747 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Plus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccggcgctcacggcctccagcaccgag 507 ||||||||| ||||||||| |||||||||||||| | || | ||||||||||||| Sbjct: 410 tccgcgtacagcggccacggcgccatcggcacgccgtgccacaggctctccagcaccgag 469 Query: 508 ttcca 512 ||||| Sbjct: 470 ttcca 474
>dbj|AK062590.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G10, full insert sequence Length = 1663 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 1193 ctccagcaccgagttccagcc 1173
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 atggcgtcatggctgtcgtcg 97 ||||||||||||||||||||| Sbjct: 1222669 atggcgtcatggctgtcgtcg 1222689
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 464 acgtgaccatcggcacgccggcgct 488 ||||| ||||||||||||||||||| Sbjct: 74035 acgtgtccatcggcacgccggcgct 74059
>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09, complete sequence Length = 148191 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 495 ctccagcaccgagttccagcc 515 ||||||||||||||||||||| Sbjct: 73937 ctccagcaccgagttccagcc 73957
>ref|XM_476272.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1515 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gtcttctccaacctcgacgg 181 |||||||||||||||||||| Sbjct: 523 gtcttctccaacctcgacgg 542
>ref|XM_470041.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1482 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 gcctccagcaccgagttcca 512 |||||||||||||||||||| Sbjct: 1136 gcctccagcaccgagttcca 1117
>ref|NM_197257.1| Oryza sativa (japonica cultivar-group) putative TPR (tetratricopeptide repeat) domain containing protein (OSJNBa0062C05.29), mRNA Length = 2382 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cggagctccggcgagccgtc 198 |||||||||||||||||||| Sbjct: 29 cggagctccggcgagccgtc 48
>ref|XM_478280.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1501 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 |||||||| ||||||||| ||||||||||||||| Sbjct: 1204 tccgcgtagagcggccacggcaccatcggcacgccg 1169
>ref|XM_478285.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 ||||||||| ||||||||| |||||||||||||| Sbjct: 1269 tccgcgtacagcggccacggcgccatcggcacgccg 1234
>gb|BT017400.1| Zea mays clone EL01N0328H09.c mRNA sequence Length = 1152 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 gcctccagcaccgagttcca 512 |||||||||||||||||||| Sbjct: 652 gcctccagcaccgagttcca 633
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ccatcggcacgccggcgctc 489 |||||||||||||||||||| Sbjct: 387659 ccatcggcacgccggcgctc 387678
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtc 198 |||||||||||||||||||| Sbjct: 158076 cggagctccggcgagccgtc 158057
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 481 ccggcgctcacggcctccagcaccgagttcca 512 |||||||| || ||||| |||||||||||||| Sbjct: 74754 ccggcgctgaccgcctctagcaccgagttcca 74723
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 atggcgtcatggctgtcgtc 96 |||||||||||||||||||| Sbjct: 1849290 atggcgtcatggctgtcgtc 1849271
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttc 510 |||||||||||||||| ||| ||||||||| ||||||| Sbjct: 167766 catcggcacgccggcgtgcaccgcctccagcgtcgagttc 167805
>ref|NM_001040581.1| Bos taurus ribosomal protein S21 (RPS21), mRNA Length = 454 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gacgcgtagtccttggcgccgatg 396 ||||||| |||||||||||||||| Sbjct: 140 gacgcgtggtccttggcgccgatg 117
>gb|AC147068.3| Pan troglodytes BAC clone RP43-165E11 from 7, complete sequence Length = 177119 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 atccaaaaagaaagttcaaa 128 |||||||||||||||||||| Sbjct: 34418 atccaaaaagaaagttcaaa 34437
>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence Length = 366816 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 ggcctccagcaccgagttcc 511 |||||||||||||||||||| Sbjct: 140840 ggcctccagcaccgagttcc 140859
>gb|BC108180.1| Bos taurus ribosomal protein S21, mRNA (cDNA clone MGC:133562 IMAGE:8055700), complete cds Length = 454 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gacgcgtagtccttggcgccgatg 396 ||||||| |||||||||||||||| Sbjct: 140 gacgcgtggtccttggcgccgatg 117
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gtcttctccaacctcgacgg 181 |||||||||||||||||||| Sbjct: 44347 gtcttctccaacctcgacgg 44366
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 gcctccagcaccgagttcca 512 |||||||||||||||||||| Sbjct: 33485158 gcctccagcaccgagttcca 33485139
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete sequence Length = 41693 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 gcctccagcaccgagttcca 512 |||||||||||||||||||| Sbjct: 14347 gcctccagcaccgagttcca 14328
>ref|XM_862535.1| PREDICTED: Canis familiaris similar to ribosomal protein S21, transcript variant 2 (LOC485959), mRNA Length = 434 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gacgcgtagtccttggcgccgatg 396 ||||||| |||||||||||||||| Sbjct: 93 gacgcgtggtccttggcgccgatg 70
>ref|XM_543084.2| PREDICTED: Canis familiaris similar to ribosomal protein S21, transcript variant 1 (LOC485959), mRNA Length = 303 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gacgcgtagtccttggcgccgatg 396 ||||||| |||||||||||||||| Sbjct: 94 gacgcgtggtccttggcgccgatg 71
>ref|XM_382670.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02494.1) partial mRNA Length = 282 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 acgccgaccttgagaagctc 419 |||||||||||||||||||| Sbjct: 29 acgccgaccttgagaagctc 48
>gb|AC002039.1|HUAC002039 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-13F4 ~complete genomic sequence, complete sequence Length = 127485 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgctcacggcctccagcacc 504 |||||||||||||||||||| Sbjct: 72073 cgctcacggcctccagcacc 72054
>ref|XM_847293.1| PREDICTED: Canis familiaris similar to ribosomal protein S21 (LOC609941), mRNA Length = 146 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 gacgcgtagtccttggcgccgatg 396 ||||||| |||||||||||||||| Sbjct: 93 gacgcgtggtccttggcgccgatg 70
>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence Length = 182831 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 cggccacgtgaccatcggcacgcc 482 ||||||||||||||||||| |||| Sbjct: 141325 cggccacgtgaccatcggcccgcc 141302
>emb|AL592043.7| Human DNA sequence from clone RP11-281B1 on chromosome Xp21.3-22.12 Contains part of a novel gene, an arginine/serine-rich splicing factor 2 (SFRS2) pseudogene and a CpG island, complete sequence Length = 184391 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ctctccatcaacctctggat 323 |||||||||||||||||||| Sbjct: 176136 ctctccatcaacctctggat 176155
>emb|AL356389.20| Human DNA sequence from clone RP11-352P4 on chromosome 1 Contains the 3' end of the gene for maba1 (KIAA1324) and the SARS gene for seryl-tRNA synthetase, complete sequence Length = 97114 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aagagaaacttttcttgctc 27 |||||||||||||||||||| Sbjct: 42408 aagagaaacttttcttgctc 42389
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cggccacgtgaccatcggca 478 |||||||||||||||||||| Sbjct: 299596 cggccacgtgaccatcggca 299615
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgccgatgctgacgccgacc 408 |||||||||||||||||||| Sbjct: 1308520 cgccgatgctgacgccgacc 1308539
>emb|AJ279073.1|REU279073 Ralstonia eutropha molybdopterin cofactor operon (moaDEF, moeA and partial thrC genes) Length = 2960 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 accatcggcacgccggcgct 488 |||||||||||||||||||| Sbjct: 170 accatcggcacgccggcgct 151
>gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome 9, complete sequence Length = 191328 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 cggccacgtgaccatcggcacgcc 482 ||||||||||||||||||| |||| Sbjct: 171966 cggccacgtgaccatcggcccgcc 171989
>gb|AY122166.1| Drosophila melanogaster LD24507 full insert cDNA Length = 2974 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 258 aggtccttggccttcttctg 239
>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177096 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 158474 aggtccttggccttcttctg 158493
>gb|AE005841.1| Caulobacter crescentus CB15 section 167 of 359 of the complete genome Length = 11744 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ggcgccgatgctgacgccga 406 |||||||||||||||||||| Sbjct: 1643 ggcgccgatgctgacgccga 1662
>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175262 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 12981 aggtccttggccttcttctg 13000
>ref|NM_166899.1| Drosophila melanogaster CG32809-RB, transcript variant B (CG32809), mRNA Length = 2656 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 1960 aggtccttggccttcttctg 1941
>ref|NM_130578.2| Drosophila melanogaster CG32809-RD, transcript variant D (CG32809), mRNA Length = 4657 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 1960 aggtccttggccttcttctg 1941
>gb|AC024337.8| Homo sapiens chromosome 15, clone RP11-236L14, complete sequence Length = 106945 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gcctggatgtcttctccaac 173 |||||||||||||||||||| Sbjct: 21013 gcctggatgtcttctccaac 20994
>gb|AY061827.1| Drosophila melanogaster GH23439 full length cDNA Length = 2652 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 1956 aggtccttggccttcttctg 1937
>gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complete sequence Length = 171858 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcctggatgtcttctccaac 173 |||||||||||||||||||| Sbjct: 37421 gcctggatgtcttctccaac 37440
>gb|DQ096557.1| Mesocestoides sp. C KP-2005 isolate KAP113 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence Length = 519 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tggctgtcgtcgtagcaaag 105 |||||||||||||||||||| Sbjct: 274 tggctgtcgtcgtagcaaag 293
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gcctccagcaccgagttcca 512 |||||||||||||||||||| Sbjct: 12991 gcctccagcaccgagttcca 13010
>ref|NG_002795.1| Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 2 (PKD1P2) on chromosome 16 Length = 21484 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgctcacggcctccagcacc 504 |||||||||||||||||||| Sbjct: 10248 cgctcacggcctccagcacc 10229
>ref|NG_002798.1| Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 5 (PKD1P5) on chromosome 16 Length = 27694 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgctcacggcctccagcacc 504 |||||||||||||||||||| Sbjct: 16305 cgctcacggcctccagcacc 16286
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ccatcggcacgccggcgctc 489 |||||||||||||||||||| Sbjct: 183713 ccatcggcacgccggcgctc 183694
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 acgccgaccttgagaagctc 419 |||||||||||||||||||| Sbjct: 1636090 acgccgaccttgagaagctc 1636071
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtc 198 |||||||||||||||||||| Sbjct: 18860340 cggagctccggcgagccgtc 18860321
>gb|AC138969.2| Homo sapiens chromosome 16 clone RP11-958N24, complete sequence Length = 216759 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 cgctcacggcctccagcacc 504 |||||||||||||||||||| Sbjct: 23035 cgctcacggcctccagcacc 23054
>gb|AC126755.3| Homo sapiens chromosome 16 clone RP11-1212A22, complete sequence Length = 223432 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgctcacggcctccagcacc 504 |||||||||||||||||||| Sbjct: 50677 cgctcacggcctccagcacc 50658
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 481 ccggcgctcacggcctccagcaccgagttcca 512 |||||||| || ||||| |||||||||||||| Sbjct: 24472081 ccggcgctgaccgcctctagcaccgagttcca 24472050 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 471 catcggcacgccggcgctcacggcctccagcaccgagttc 510 |||||||||||||||| ||| ||||||||| ||||||| Sbjct: 24099277 catcggcacgccggcgtgcaccgcctccagcgtcgagttc 24099316 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gtcttctccaacctcgacgg 181 |||||||||||||||||||| Sbjct: 11599912 gtcttctccaacctcgacgg 11599931
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 gcctccagcaccgagttcca 512 |||||||||||||||||||| Sbjct: 33575630 gcctccagcaccgagttcca 33575611
>gb|AY228175.1|AY228174S2 Streptomyces murayamaensis putative arylamine N-acetyltransferase, putative hydrolase, putative transmembrane efflux protein, putative transcriptional regulator, putative ribonuclease HII, putative ATP-dependent DNA helicase, putative bifunctional enzyme deaminase/reductase genes, complete cds; kinamycin biosynthetic gene cluster, partial sequence and unknown genes Length = 34564 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 ctggtccgcgtaccgcggcc 463 |||||||||||||||||||| Sbjct: 7186 ctggtccgcgtaccgcggcc 7205
>gb|AC009362.8|AC009362 Homo sapiens chromosome 7 clone RP11-256C6, complete sequence Length = 160156 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 atccaaaaagaaagttcaaa 128 |||||||||||||||||||| Sbjct: 77816 atccaaaaagaaagttcaaa 77835
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 cggcgctcacggcctccagcaccg 505 |||||||| ||||||||||||||| Sbjct: 1215882 cggcgctctcggcctccagcaccg 1215905
>dbj|AK105261.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A09, full insert sequence Length = 1785 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 ||||||||| ||||||||| |||||||||||||| Sbjct: 1269 tccgcgtacagcggccacggcgccatcggcacgccg 1234
>dbj|AK067969.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122F06, full insert sequence Length = 2716 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cggagctccggcgagccgtc 198 |||||||||||||||||||| Sbjct: 67 cggagctccggcgagccgtc 86
>dbj|AK067710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120G17, full insert sequence Length = 2031 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 |||||||| ||||||||| ||||||||||||||| Sbjct: 1128 tccgcgtagagcggccacggcaccatcggcacgccg 1093
>dbj|AK059016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A10, full insert sequence Length = 1501 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 448 tccgcgtaccgcggccacgtgaccatcggcacgccg 483 |||||||| ||||||||| ||||||||||||||| Sbjct: 1204 tccgcgtagagcggccacggcaccatcggcacgccg 1169
>gb|U40823.1|ABU40823 Azospirillum brasilense galactose binding protein regulator (gbpR) gene and sugar binding protein precursor (chvE) gene, complete cds Length = 2358 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ccttcacgccgaggtccttggcct 286 ||||||||||| |||||||||||| Sbjct: 1567 ccttcacgccgcggtccttggcct 1544
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 220784 aggtccttggccttcttctg 220803
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ccatcggcacgccggcgctc 489 |||||||||||||||||||| Sbjct: 564871 ccatcggcacgccggcgctc 564852
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cggagctccggcgagccgtc 198 |||||||||||||||||||| Sbjct: 18871594 cggagctccggcgagccgtc 18871575
>gb|U83136.1|RSU83136 Rhodobacter sphaeroides protein-export membrane protein (secF), hypothetical protein (yheA), hypothetical ABC transporter proteins (ccmA, ccmB, and ccmC), hypothetical c-type cytochrome maturation proteins (ccmD and ccmG) genes, complete cds Length = 4576 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ccatcggcacgccggcgctc 489 |||||||||||||||||||| Sbjct: 2660 ccatcggcacgccggcgctc 2679
>emb|AL030993.1|DMC73D1 Drosophila melanogaster cosmid clone 73D1 Length = 3468 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 aggtccttggccttcttctg 293 |||||||||||||||||||| Sbjct: 2154 aggtccttggccttcttctg 2173 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,427,547 Number of Sequences: 3902068 Number of extensions: 3427547 Number of successful extensions: 70287 Number of sequences better than 10.0: 138 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68621 Number of HSP's gapped (non-prelim): 1666 length of query: 515 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 492 effective length of database: 17,143,297,704 effective search space: 8434502470368 effective search space used: 8434502470368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
