>ref|XM_540404.2| PREDICTED: Canis familiaris similar to CG9913-PB, isoform B
            (LOC483285), mRNA
          Length = 3015

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 472  ctgcttcctcagcttcttctgc 493
            ||||||||||||||||||||||
Sbjct: 1584 ctgcttcctcagcttcttctgc 1563

>gb|BC020087.1| Mus musculus RIKEN cDNA 1200007B05 gene, mRNA (cDNA clone MGC:28937
           IMAGE:3990909), complete cds
          Length = 2943

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 218 ccaatgtcaggtcaattaccat 239
           ||||||||||||||||||||||
Sbjct: 450 ccaatgtcaggtcaattaccat 471

>gb|AC116180.4| Mus musculus BAC clone RP24-167M11 from chromosome 9, complete sequence
          Length = 149442

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   acacctagcctccttgcattt 204
             |||||||||||||||||||||
Sbjct: 36187 acacctagcctccttgcattt 36167

>gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, complete sequence
          Length = 192165

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 470    tcctgcttcctcagcttctt 489
              ||||||||||||||||||||
Sbjct: 154675 tcctgcttcctcagcttctt 154656

>gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, complete sequence
          Length = 129686

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   tcctgcttcctcagcttctt 489
             ||||||||||||||||||||
Sbjct: 79792 tcctgcttcctcagcttctt 79811

>gb|AF188027.5| Homo sapiens chromosome 8 clone RP11-101A8 map q21.11, complete sequence
          Length = 146199

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 471    cctgcttcctcagcttcttctgcc 494
              ||||||||||| ||||||||||||
Sbjct: 142695 cctgcttcctcggcttcttctgcc 142672

>gb|AF110324.3| Homo sapiens chromosome 8 clone GS1-9H13 map q21.11, complete sequence
          Length = 89500

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 471   cctgcttcctcagcttcttctgcc 494
             ||||||||||| ||||||||||||
Sbjct: 17840 cctgcttcctcggcttcttctgcc 17817

>ref|XM_726747.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300910.00.0)
           partial mRNA
          Length = 294

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 aacatatcggcctcttcttg 466
           ||||||||||||||||||||
Sbjct: 249 aacatatcggcctcttcttg 230

>ref|XM_738408.1| Plasmodium chabaudi chabaudi splicing factor (PC000103.01.0)
           partial mRNA
          Length = 852

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 aacatatcggcctcttcttg 466
           ||||||||||||||||||||
Sbjct: 330 aacatatcggcctcttcttg 311

>gb|AC148178.35| Medicago truncatula clone mth2-5b21, complete sequence
          Length = 115185

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   ctggtgttttcagtgacacc 314
             ||||||||||||||||||||
Sbjct: 66480 ctggtgttttcagtgacacc 66499

>emb|AL162725.10| Human DNA sequence from clone RP11-132E11 on chromosome 9 Contains a
             novel gene, the 5' end of a novel gene (FLJ25636), a
             ribosomal protein S29 (RPS29) pseudogene,  a ribosomal
             protein L31 (RPL31) pseudogene and a CpG island, complete
             sequence
          Length = 143223

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   acctcaaatgctgctggtgt 301
             ||||||||||||||||||||
Sbjct: 57470 acctcaaatgctgctggtgt 57489

>gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence
          Length = 171421

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   gcttcctcagcttcttctgc 493
             ||||||||||||||||||||
Sbjct: 36085 gcttcctcagcttcttctgc 36104

>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete
             sequence
          Length = 196765

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   gtcctgcttcctcagcttct 488
             ||||||||||||||||||||
Sbjct: 89697 gtcctgcttcctcagcttct 89716

>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    taaccaatgtcaggtcaatt 234
              ||||||||||||||||||||
Sbjct: 799123 taaccaatgtcaggtcaatt 799104

>gb|AC073492.18| Homo sapiens Xp BAC RP11-460J19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155567

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    acctcaaatgctgctggtgt 301
              ||||||||||||||||||||
Sbjct: 115997 acctcaaatgctgctggtgt 116016

>emb|BX929523.2| Gallus gallus finished cDNA, clone ChEST187n1
          Length = 1138

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 287 aaatgctgctggtgttttcagtga 310
           ||||||||| ||||||||||||||
Sbjct: 733 aaatgctgcaggtgttttcagtga 756

>ref|XM_234124.3| PREDICTED: Rattus norvegicus neuronal PAS domain protein 3
            (predicted) (Npas3_predicted), mRNA
          Length = 5164

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 378  agggagaacgtgctgccatggcct 401
            ||||||||||||||||| ||||||
Sbjct: 2087 agggagaacgtgctgccttggcct 2064

>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence
          Length = 105308

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   actgtcaacatgtaaaactg 60
            ||||||||||||||||||||
Sbjct: 6343 actgtcaacatgtaaaactg 6362

>gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222182

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ctgtcaacatgtaaaactga 61
              ||||||||||||||||||||
Sbjct: 147959 ctgtcaacatgtaaaactga 147978

>emb|BX470174.9| Mouse DNA sequence from clone RP23-354A24 on chromosome 4, complete
             sequence
          Length = 107302

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   acctcaaatgctgctggtgt 301
             ||||||||||||||||||||
Sbjct: 22116 acctcaaatgctgctggtgt 22135

>emb|CT025535.14| Mouse DNA sequence from clone RP23-359O5 on chromosome 14, complete
             sequence
          Length = 193236

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   atgtcaggtcaattaccata 240
             ||||||||||||||||||||
Sbjct: 24896 atgtcaggtcaattaccata 24915

>ref|XM_674656.1| Plasmodium berghei strain ANKA splicing factor (PB001111.01.0),
           partial mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 447 aacatatcggcctcttcttg 466
           ||||||||||||||||||||
Sbjct: 330 aacatatcggcctcttcttg 311

>gb|AC146688.1| Gallus gallus BAC clone CH261-24P18 from chromosome unknown, complete
             sequence
          Length = 212571

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 503   ccctcctttggactggcttatgtg 526
             |||||||||||||| |||||||||
Sbjct: 53447 ccctcctttggacttgcttatgtg 53470

>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 474     gcttcctcagcttcttctgc 493
               ||||||||||||||||||||
Sbjct: 1049553 gcttcctcagcttcttctgc 1049572

>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete
              sequence
          Length = 203992

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    gccgactcaacatcacatga 269
              ||||||||||||||||||||
Sbjct: 154079 gccgactcaacatcacatga 154098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,284,806
Number of Sequences: 3902068
Number of extensions: 4284806
Number of successful extensions: 77034
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76974
Number of HSP's gapped (non-prelim): 60
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)