ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192167.1| Oryza sativa (japonica cultivar-group), predic... 301 1e-78
2dbj|AK099894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 1e-78
3dbj|AK066034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
4ref|XM_475848.1| Oryza sativa (japonica cultivar-group), predic... 145 2e-31
5dbj|AK061016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
6gb|AY110197.1| Zea mays CL41614_1 mRNA sequence 143 7e-31
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
8dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
9gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 60 8e-06
10ref|NM_101701.2| Arabidopsis thaliana aminoacyl-tRNA hydrolase A... 56 1e-04
11emb|BX813553.1|CNS0AAJW Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
12gb|BT005284.1| Arabidopsis thaliana At1g18440 mRNA, complete cds 56 1e-04
13dbj|AK119054.1| Arabidopsis thaliana At1g18440 mRNA for unknown ... 56 1e-04
14gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.031
15gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.031
16gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.031
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
18gb|AC106033.4| Homo sapiens chromosome 18, clone CTD-2025K11, co... 46 0.12
19emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 44 0.48
20gb|AC149372.1| Phakopsora pachyrhizi clone JGIAFNA-5A1, complete... 42 1.9
21gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 42 1.9
22emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 42 1.9
23gb|AC016957.49| Homo sapiens 12 BAC RP11-50I19 (Roswell Park Can... 42 1.9
24emb|AL928988.14| Mouse DNA sequence from clone RP23-402M7 on chr... 42 1.9
25gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome... 40 7.6
26gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 7.6
27gb|AC139579.3| Mus musculus BAC clone RP23-139E6 from chromosome... 40 7.6
28ref|XM_445293.1| Candida glabrata CBS138, CAGL0C02673g partial mRNA 40 7.6
29gb|AC132252.2| Mus musculus BAC clone RP24-450A24 from chromosom... 40 7.6
30gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome... 40 7.6
31ref|XM_764518.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 7.6
32ref|XM_764519.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 7.6
33gb|AE004290.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 7.6
34gb|AC101827.10| Mus musculus chromosome 15, clone RP24-426P14, c... 40 7.6
35gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Ca... 40 7.6
36gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 7.6
37emb|AL596092.8| Human DNA sequence from clone RP11-351N4 on chro... 40 7.6
38gb|AC010282.6| Homo sapiens chromosome 5 clone CTC-555I19, compl... 40 7.6
39emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast g... 40 7.6
40gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 7.6
41emb|CR380949.1| Candida glabrata strain CBS138 chromosome C comp... 40 7.6
42emb|AL935261.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 7.6
43gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence 40 7.6
44emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 ... 40 7.6
45emb|BX547993.5| Zebrafish DNA sequence from clone CH211-282E16 i... 40 7.6
46gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Can... 40 7.6
47gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, comp... 40 7.6
48gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum)... 40 7.6
49gb|AE014133.1| Streptococcus mutans UA159, complete genome 40 7.6
50gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete... 40 7.6
51gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, com... 40 7.6
52dbj|AB073156.1| Arabidopsis thaliana DNA, chromosome 4 centromer... 40 7.6
53gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Can... 40 7.6
54emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chr... 40 7.6 
>ref|NM_192167.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 801

 Score =  301 bits (152), Expect = 1e-78
 Identities = 242/272 (88%)
 Strand = Plus / Minus

                                                                       
Query: 286 tcatctattcagcatttcggatgattgggcggtgttcacgaaagtagcgctcttgttgaa 345
           ||||||||||| |||||| || || || |||||||||||  |||| ||||||||||||||
Sbjct: 801 tcatctattcaacatttcagaggactgtgcggtgttcacataagttgcgctcttgttgaa 742

                                                                       
Query: 346 tccttcaagtgtcattattcttattgcatccaagcccctatggaatgtgaaatcaagctc 405
           ||| ||||||| ||||||||| | ||| ||||||||||||||||| | ||||||||||||
Sbjct: 741 tccctcaagtgccattattctaactgcctccaagcccctatggaaagcgaaatcaagctc 682

                                                                       
Query: 406 ttcttgttcttttttggtgaatggcctgagaacaaagttggcaggatccatcttcccagg 465
           ||| ||||||||| || | ||||| | ||||||||| |||||||||||||||||||||||
Sbjct: 681 ttcctgttcttttctgttaaatggtcggagaacaaaattggcaggatccatcttcccagg 622

                                                                       
Query: 466 tggtcgtccaatgccaattcttagacgtggaaaatcacgattttgtttgagatggttgat 525
           |||||||||||||||||||||||||||||| |||||||| || || || | |||||||||
Sbjct: 621 tggtcgtccaatgccaattcttagacgtgggaaatcacggttctgcttcaaatggttgat 562

                                           
Query: 526 aatgcttctcatcccattatgcccgccatgtc 557
           ||||||||||| ||||||||| ||||||||||
Sbjct: 561 aatgcttctcaccccattatgaccgccatgtc 530
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>dbj|AK099894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113G18, full
           insert sequence
          Length = 1249

 Score =  301 bits (152), Expect = 1e-78
 Identities = 242/272 (88%)
 Strand = Plus / Minus

                                                                       
Query: 286 tcatctattcagcatttcggatgattgggcggtgttcacgaaagtagcgctcttgttgaa 345
           ||||||||||| |||||| || || || |||||||||||  |||| ||||||||||||||
Sbjct: 806 tcatctattcaacatttcagaggactgtgcggtgttcacataagttgcgctcttgttgaa 747

                                                                       
Query: 346 tccttcaagtgtcattattcttattgcatccaagcccctatggaatgtgaaatcaagctc 405
           ||| ||||||| ||||||||| | ||| ||||||||||||||||| | ||||||||||||
Sbjct: 746 tccctcaagtgccattattctaactgcctccaagcccctatggaaagcgaaatcaagctc 687

                                                                       
Query: 406 ttcttgttcttttttggtgaatggcctgagaacaaagttggcaggatccatcttcccagg 465
           ||| ||||||||| || | ||||| | ||||||||| |||||||||||||||||||||||
Sbjct: 686 ttcctgttcttttctgttaaatggtcggagaacaaaattggcaggatccatcttcccagg 627

                                                                       
Query: 466 tggtcgtccaatgccaattcttagacgtggaaaatcacgattttgtttgagatggttgat 525
           |||||||||||||||||||||||||||||| |||||||| || || || | |||||||||
Sbjct: 626 tggtcgtccaatgccaattcttagacgtgggaaatcacggttctgcttcaaatggttgat 567

                                           
Query: 526 aatgcttctcatcccattatgcccgccatgtc 557
           ||||||||||| ||||||||| ||||||||||
Sbjct: 566 aatgcttctcaccccattatgaccgccatgtc 535
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>dbj|AK066034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047M19, full
           insert sequence
          Length = 1211

 Score =  293 bits (148), Expect = 3e-76
 Identities = 241/272 (88%)
 Strand = Plus / Minus

                                                                       
Query: 286 tcatctattcagcatttcggatgattgggcggtgttcacgaaagtagcgctcttgttgaa 345
           ||||||||||| |||||| || || || |||||||||||  |||| ||||||||||||||
Sbjct: 830 tcatctattcaacatttcagaggactgtgcggtgttcacataagttgcgctcttgttgaa 771

                                                                       
Query: 346 tccttcaagtgtcattattcttattgcatccaagcccctatggaatgtgaaatcaagctc 405
           |||  |||||| ||||||||| | ||| ||||||||||||||||| | ||||||||||||
Sbjct: 770 tcccacaagtgccattattctaactgcctccaagcccctatggaaagcgaaatcaagctc 711

                                                                       
Query: 406 ttcttgttcttttttggtgaatggcctgagaacaaagttggcaggatccatcttcccagg 465
           ||| ||||||||| || | ||||| | ||||||||| |||||||||||||||||||||||
Sbjct: 710 ttcctgttcttttctgttaaatggtcggagaacaaaattggcaggatccatcttcccagg 651

                                                                       
Query: 466 tggtcgtccaatgccaattcttagacgtggaaaatcacgattttgtttgagatggttgat 525
           |||||||||||||||||||||||||||||| |||||||| || || || | |||||||||
Sbjct: 650 tggtcgtccaatgccaattcttagacgtgggaaatcacggttctgcttcaaatggttgat 591

                                           
Query: 526 aatgcttctcatcccattatgcccgccatgtc 557
           ||||||||||| ||||||||| ||||||||||
Sbjct: 590 aatgcttctcaccccattatgaccgccatgtc 559
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>ref|XM_475848.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 708

 Score =  145 bits (73), Expect = 2e-31
 Identities = 199/241 (82%)
 Strand = Plus / Minus

                                                                       
Query: 317 gtgttcacgaaagtagcgctcttgttgaatccttcaagtgtcattattcttattgcatcc 376
           |||||||| ||||| || | ||||||||||||||| |||  |||||| |||| ||| | |
Sbjct: 677 gtgttcacaaaagttgcacccttgttgaatccttcgagtagcattatccttactgcttgc 618

                                                                       
Query: 377 aagcccctatggaatgtgaaatcaagctcttcttgttcttttttggtgaatggcctgaga 436
           |||| ||||| ||  || |||| |||||||||||||||||  |||||||||| ||| |||
Sbjct: 617 aagctcctattgatcgtcaaattaagctcttcttgttcttccttggtgaatgaccttaga 558

                                                                       
Query: 437 acaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattcttagacgtgga 496
           ||||||  |  || ||||| ||||||||  || || ||||| ||||| || || ||||| 
Sbjct: 557 acaaagccgatagcatccaacttcccagtggggcgcccaataccaatcctaaggcgtggg 498

                                                                       
Query: 497 aaatcacgattttgtttgagatggttgataatgcttctcatcccattatgcccgccatgt 556
           ||||||||  | ||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct: 497 aaatcacggctctgtttcaaatggttaataatgcttctcatcccattatgcccgccatgt 438

            
Query: 557 c 557
           |
Sbjct: 437 c 437
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>dbj|AK061016.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B10, full
           insert sequence
          Length = 1074

 Score =  145 bits (73), Expect = 2e-31
 Identities = 199/241 (82%)
 Strand = Plus / Minus

                                                                       
Query: 317 gtgttcacgaaagtagcgctcttgttgaatccttcaagtgtcattattcttattgcatcc 376
           |||||||| ||||| || | ||||||||||||||| |||  |||||| |||| ||| | |
Sbjct: 765 gtgttcacaaaagttgcacccttgttgaatccttcgagtagcattatccttactgcttgc 706

                                                                       
Query: 377 aagcccctatggaatgtgaaatcaagctcttcttgttcttttttggtgaatggcctgaga 436
           |||| ||||| ||  || |||| |||||||||||||||||  |||||||||| ||| |||
Sbjct: 705 aagctcctattgatcgtcaaattaagctcttcttgttcttccttggtgaatgaccttaga 646

                                                                       
Query: 437 acaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattcttagacgtgga 496
           ||||||  |  || ||||| ||||||||  || || ||||| ||||| || || ||||| 
Sbjct: 645 acaaagccgatagcatccaacttcccagtggggcgcccaataccaatcctaaggcgtggg 586

                                                                       
Query: 497 aaatcacgattttgtttgagatggttgataatgcttctcatcccattatgcccgccatgt 556
           ||||||||  | ||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct: 585 aaatcacggctctgtttcaaatggttaataatgcttctcatcccattatgcccgccatgt 526

            
Query: 557 c 557
           |
Sbjct: 525 c 525
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>gb|AY110197.1| Zea mays CL41614_1 mRNA sequence
          Length = 531

 Score =  143 bits (72), Expect = 7e-31
 Identities = 114/128 (89%)
 Strand = Plus / Plus

                                                                       
Query: 428 ggcctgagaacaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattctt 487
           |||| |||||| || |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 306 ggccggagaacgaaattggcaggatccatcttcccgggcggtcgtccaatgccaattctt 365

                                                                       
Query: 488 agacgtggaaaatcacgattttgtttgagatggttgataatgcttctcatcccattatgc 547
           || ||||||||||||||  | ||||| | ||||||||  |||||||||||||||||||||
Sbjct: 366 aggcgtggaaaatcacggctctgtttcaaatggttgacgatgcttctcatcccattatgc 425

                   
Query: 548 ccgccatg 555
           || |||||
Sbjct: 426 ccaccatg 433



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                       
Query: 290 ctattcagcatttcggatgattgggcggtgttcacgaaagtagcgctcttgttgaatcct 349
           |||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct: 168 ctattcagcatttcagatgattgggcagtgttcacgtaagtcgcgctcttgttgaatcct 227

             
Query: 350 tc 351
           ||
Sbjct: 228 tc 229
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 4e-23
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                            
Query: 286      tcatctattcagcatttcggatgattgggcggtgttcacgaaagtagcgctcttgttgaa 345
                ||||||||||| |||||| || || || |||||||||||  |||| ||||||||||||||
Sbjct: 28651303 tcatctattcaacatttcagaggactgtgcggtgttcacataagttgcgctcttgttgaa 28651362

                                                                           
Query: 346      tccttcaagtgtcattattcttattgcatccaagcccctatggaatgtgaaatcaagct 404
                ||| ||||||| ||||||||| | ||| ||||||||||||||||| | |||||||||||
Sbjct: 28651363 tccctcaagtgccattattctaactgcctccaagcccctatggaaagcgaaatcaagct 28651421



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                            
Query: 403      ctcttcttgttcttttttggtgaatggcctgagaacaaagttggcaggatccatcttccc 462
                |||||| ||||||||| || | ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 28651528 ctcttcctgttcttttctgttaaatggtcggagaacaaaattggcaggatccatcttccc 28651587

                                  
Query: 463      aggtggtcgtccaatgcc 480
                ||||||||||||||||||
Sbjct: 28651588 aggtggtcgtccaatgcc 28651605



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 479      ccaattcttagacgtggaaaatcacgattttgtttgagatggttgataatgcttctca 536
                ||||||||||||||||| |||||||| || || || | ||||||||||||||||||||
Sbjct: 28651674 ccaattcttagacgtgggaaatcacggttctgcttcaaatggttgataatgcttctca 28651731
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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431H09
          Length = 166886

 Score =  117 bits (59), Expect = 4e-23
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                         
Query: 286   tcatctattcagcatttcggatgattgggcggtgttcacgaaagtagcgctcttgttgaa 345
             ||||||||||| |||||| || || || |||||||||||  |||| ||||||||||||||
Sbjct: 34377 tcatctattcaacatttcagaggactgtgcggtgttcacataagttgcgctcttgttgaa 34436

                                                                        
Query: 346   tccttcaagtgtcattattcttattgcatccaagcccctatggaatgtgaaatcaagct 404
             ||| ||||||| ||||||||| | ||| ||||||||||||||||| | |||||||||||
Sbjct: 34437 tccctcaagtgccattattctaactgcctccaagcccctatggaaagcgaaatcaagct 34495



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                         
Query: 403   ctcttcttgttcttttttggtgaatggcctgagaacaaagttggcaggatccatcttccc 462
             |||||| ||||||||| || | ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 34602 ctcttcctgttcttttctgttaaatggtcggagaacaaaattggcaggatccatcttccc 34661

                               
Query: 463   aggtggtcgtccaatgcc 480
             ||||||||||||||||||
Sbjct: 34662 aggtggtcgtccaatgcc 34679



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 479   ccaattcttagacgtggaaaatcacgattttgtttgagatggttgataatgcttctca 536
             ||||||||||||||||| |||||||| || || || | ||||||||||||||||||||
Sbjct: 34748 ccaattcttagacgtgggaaatcacggttctgcttcaaatggttgataatgcttctca 34805
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>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                               
Query: 447   caggatccatcttcccaggtggtcgtccaatgcc 480
             ||||||||||||||||||| ||||||||||||||
Sbjct: 79303 caggatccatcttcccaggaggtcgtccaatgcc 79336
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>ref|NM_101701.2| Arabidopsis thaliana aminoacyl-tRNA hydrolase AT1G18440 mRNA,
           complete cds
          Length = 1109

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 433 gagaacaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattcttagacg 492
           ||||||||| ||||| | |||||||||||| || || ||||| || || |||||||| ||
Sbjct: 741 gagaacaaaattggctgtatccatcttccctggaggacgtccgatccctattcttagtcg 682

                       
Query: 493 tggaaaatcacg 504
            |||||||||||
Sbjct: 681 aggaaaatcacg 670
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>emb|BX813553.1|CNS0AAJW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB24ZA09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1387

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 433  gagaacaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattcttagacg 492
            ||||||||| ||||| | |||||||||||| || || ||||| || || |||||||| ||
Sbjct: 1107 gagaacaaaattggctgtatccatcttccctggaggacgtccgatccctattcttagtcg 1048

                        
Query: 493  tggaaaatcacg 504
             |||||||||||
Sbjct: 1047 aggaaaatcacg 1036
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>gb|BT005284.1| Arabidopsis thaliana At1g18440 mRNA, complete cds
          Length = 867

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 433 gagaacaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattcttagacg 492
           ||||||||| ||||| | |||||||||||| || || ||||| || || |||||||| ||
Sbjct: 723 gagaacaaaattggctgtatccatcttccctggaggacgtccgatccctattcttagtcg 664

                       
Query: 493 tggaaaatcacg 504
            |||||||||||
Sbjct: 663 aggaaaatcacg 652
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>dbj|AK119054.1| Arabidopsis thaliana At1g18440 mRNA for unknown protein, complete
           cds, clone: RAFL21-39-I07
          Length = 1109

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 433 gagaacaaagttggcaggatccatcttcccaggtggtcgtccaatgccaattcttagacg 492
           ||||||||| ||||| | |||||||||||| || || ||||| || || |||||||| ||
Sbjct: 741 gagaacaaaattggctgtatccatcttccctggaggacgtccgatccctattcttagtcg 682

                       
Query: 493 tggaaaatcacg 504
            |||||||||||
Sbjct: 681 aggaaaatcacg 670
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
           complete sequence
          Length = 177861

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 403 ctcttcttgttcttttttggtgaatggcctgagaacaaag 442
           ||||||||||||||  |||||||||| ||| |||||||||
Sbjct: 398 ctcttcttgttcttccttggtgaatgaccttagaacaaag 359



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 317 gtgttcacgaaagtagcgctcttgttgaatccttcaagtgtcattattcttattgcatcc 376
           |||||||| ||||| || | ||||||||||||||| |||  |||||| |||| ||| | |
Sbjct: 654 gtgttcacaaaagttgcacccttgttgaatccttcgagtagcattatccttactgcttgc 595

                     
Query: 377 aagcccctat 386
           |||| |||||
Sbjct: 594 aagctcctat 585



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 491 cgtggaaaatcacgattttgtttgagatggttgataatgcttctcatcc 539
           ||||| ||||||||  | ||||| | |||||| ||||||||||||||||
Sbjct: 237 cgtgggaaatcacggctctgtttcaaatggttaataatgcttctcatcc 189
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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 403   ctcttcttgttcttttttggtgaatggcctgagaacaaag 442
             ||||||||||||||  |||||||||| ||| |||||||||
Sbjct: 75583 ctcttcttgttcttccttggtgaatgaccttagaacaaag 75544



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                         
Query: 317   gtgttcacgaaagtagcgctcttgttgaatccttcaagtgtcattattcttattgcatcc 376
             |||||||| ||||| || | ||||||||||||||| |||  |||||| |||| ||| | |
Sbjct: 75839 gtgttcacaaaagttgcacccttgttgaatccttcgagtagcattatccttactgcttgc 75780

                       
Query: 377   aagcccctat 386
             |||| |||||
Sbjct: 75779 aagctcctat 75770



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 491   cgtggaaaatcacgattttgtttgagatggttgataatgcttctcatcc 539
             ||||| ||||||||  | ||||| | |||||| ||||||||||||||||
Sbjct: 75422 cgtgggaaatcacggctctgtttcaaatggttaataatgcttctcatcc 75374



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   cccattatgcccgccatgtc 557
             ||||||||||||||||||||
Sbjct: 74912 cccattatgcccgccatgtc 74893
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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
              complete sequence
          Length = 166218

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 403    ctcttcttgttcttttttggtgaatggcctgagaacaaag 442
              ||||||||||||||  |||||||||| ||| |||||||||
Sbjct: 100086 ctcttcttgttcttccttggtgaatgaccttagaacaaag 100047



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                          
Query: 317    gtgttcacgaaagtagcgctcttgttgaatccttcaagtgtcattattcttattgcatcc 376
              |||||||| ||||| || | ||||||||||||||| |||  |||||| |||| ||| | |
Sbjct: 100342 gtgttcacaaaagttgcacccttgttgaatccttcgagtagcattatccttactgcttgc 100283

                        
Query: 377    aagcccctat 386
              |||| |||||
Sbjct: 100282 aagctcctat 100273



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 491   cgtggaaaatcacgattttgtttgagatggttgataatgcttctcatcc 539
             ||||| ||||||||  | ||||| | |||||| ||||||||||||||||
Sbjct: 99925 cgtgggaaatcacggctctgtttcaaatggttaataatgcttctcatcc 99877



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   cccattatgcccgccatgtc 557
             ||||||||||||||||||||
Sbjct: 99414 cccattatgcccgccatgtc 99395
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 403      ctcttcttgttcttttttggtgaatggcctgagaacaaag 442
                ||||||||||||||  |||||||||| ||| |||||||||
Sbjct: 27069002 ctcttcttgttcttccttggtgaatgaccttagaacaaag 27068963



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                            
Query: 317      gtgttcacgaaagtagcgctcttgttgaatccttcaagtgtcattattcttattgcatcc 376
                |||||||| ||||| || | ||||||||||||||| |||  |||||| |||| ||| | |
Sbjct: 27069258 gtgttcacaaaagttgcacccttgttgaatccttcgagtagcattatccttactgcttgc 27069199

                          
Query: 377      aagcccctat 386
                |||| |||||
Sbjct: 27069198 aagctcctat 27069189



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 491      cgtggaaaatcacgattttgtttgagatggttgataatgcttctcatcc 539
                ||||| ||||||||  | ||||| | |||||| ||||||||||||||||
Sbjct: 27068841 cgtgggaaatcacggctctgtttcaaatggttaataatgcttctcatcc 27068793



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 538      cccattatgcccgccatgtc 557
                ||||||||||||||||||||
Sbjct: 27068330 cccattatgcccgccatgtc 27068311
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>gb|AC106033.4| Homo sapiens chromosome 18, clone CTD-2025K11, complete sequence
          Length = 95930

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 83    tcacattgctggtataaataaaa 105
             |||||||||||||||||||||||
Sbjct: 51016 tcacattgctggtataaataaaa 51038
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 404  tcttcttgttcttttttggtga 425
            ||||||||||||||||||||||
Sbjct: 4968 tcttcttgttcttttttggtga 4947
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>gb|AC149372.1| Phakopsora pachyrhizi clone JGIAFNA-5A1, complete sequence
          Length = 31316

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 140   taaagctttggttttcagtgtgggg 164
             |||||||||||||||||| ||||||
Sbjct: 22675 taaagctttggttttcagggtgggg 22699
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    cacaatgcaaataactgaaaa 207
              |||||||||||||||||||||
Sbjct: 109845 cacaatgcaaataactgaaaa 109865
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    aaaaaatgaatcaattggttt 284
              |||||||||||||||||||||
Sbjct: 923019 aaaaaatgaatcaattggttt 922999
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>gb|AC016957.49| Homo sapiens 12 BAC RP11-50I19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 50743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   cacaatgcaaataactgaaaa 207
             |||||||||||||||||||||
Sbjct: 11437 cacaatgcaaataactgaaaa 11417
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>emb|AL928988.14| Mouse DNA sequence from clone RP23-402M7 on chromosome 2, complete
             sequence
          Length = 121977

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ctcaaatgctatggcatccat 68
             |||||||||||||||||||||
Sbjct: 98775 ctcaaatgctatggcatccat 98795
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>gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome 3, complete
            sequence
          Length = 203750

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   ataaataaaattattatcac 115
            ||||||||||||||||||||
Sbjct: 3520 ataaataaaattattatcac 3539
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 195     aaataactgaaaacccctat 214
               ||||||||||||||||||||
Sbjct: 1467396 aaataactgaaaacccctat 1467415
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>gb|AC139579.3| Mus musculus BAC clone RP23-139E6 from chromosome 7, complete sequence
          Length = 194033

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     ttgctggtataaataaaatt 107
              ||||||||||||||||||||
Sbjct: 156132 ttgctggtataaataaaatt 156113
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>ref|XM_445293.1| Candida glabrata CBS138, CAGL0C02673g partial mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  atggaatgtgaaatcaagct 404
            ||||||||||||||||||||
Sbjct: 1234 atggaatgtgaaatcaagct 1253
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>gb|AC132252.2| Mus musculus BAC clone RP24-450A24 from chromosome 15, complete sequence
          Length = 180985

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 519    ggttgataatgcttctcatcccat 542
              ||||||||||||| ||||||||||
Sbjct: 156032 ggttgataatgctgctcatcccat 156055
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>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete
            sequence
          Length = 186986

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  caggatccatcttcccaggt 466
            ||||||||||||||||||||
Sbjct: 3654 caggatccatcttcccaggt 3635
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>ref|XM_764518.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_26_29020_31941)
            partial mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tggccacaatgcaaataact 202
            ||||||||||||||||||||
Sbjct: 2857 tggccacaatgcaaataact 2838
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>ref|XM_764519.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_26_31944_31735) partial mRNA
          Length = 210

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 tggccacaatgcaaataact 202
           ||||||||||||||||||||
Sbjct: 69  tggccacaatgcaaataact 88
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>gb|AE004290.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section
           198 of 251 of the complete chromosome
          Length = 10581

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 cccattatgcccgccatgtc 557
           ||||||||||||||||||||
Sbjct: 468 cccattatgcccgccatgtc 449
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>gb|AC101827.10| Mus musculus chromosome 15, clone RP24-426P14, complete sequence
          Length = 125196

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 519   ggttgataatgcttctcatcccat 542
             ||||||||||||| ||||||||||
Sbjct: 41946 ggttgataatgctgctcatcccat 41923
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>gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 158603

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    agctcttcttgttctttttt 420
              ||||||||||||||||||||
Sbjct: 138759 agctcttcttgttctttttt 138778
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     aataaaattattatcaccca 118
              ||||||||||||||||||||
Sbjct: 196146 aataaaattattatcaccca 196127
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>emb|AL596092.8| Human DNA sequence from clone RP11-351N4 on chromosome 13 Contains part
             of a novel gene (KIAA0774), a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene, a novel gene and a CpG
             island, complete sequence
          Length = 153841

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 401   agctcttcttgttcttttttggtg 424
             ||||||||||||||||| ||||||
Sbjct: 84289 agctcttcttgttctttcttggtg 84312
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>gb|AC010282.6| Homo sapiens chromosome 5 clone CTC-555I19, complete sequence
          Length = 191131

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 348    cttcaagtgtcattattcttattg 371
              |||||||| |||||||||||||||
Sbjct: 104262 cttcaagtttcattattcttattg 104285
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>emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast genome
          Length = 119704

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ctggtataaataaaattatt 110
             ||||||||||||||||||||
Sbjct: 58156 ctggtataaataaaattatt 58175
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 265     aaaaatgaatcaattggttt 284
               ||||||||||||||||||||
Sbjct: 3897359 aaaaatgaatcaattggttt 3897340
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>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence
          Length = 558804

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    atggaatgtgaaatcaagct 404
              ||||||||||||||||||||
Sbjct: 273243 atggaatgtgaaatcaagct 273262
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>emb|AL935261.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 10/11
          Length = 298050

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 492   gtggaaaatcacgattttgtttga 515
             ||||||||||| ||||||||||||
Sbjct: 50741 gtggaaaatcatgattttgtttga 50718
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>gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence
          Length = 202402

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   ttcttttttggtgaatggcc 431
             ||||||||||||||||||||
Sbjct: 84873 ttcttttttggtgaatggcc 84892
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>emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 in linkage group 23,
              complete sequence
          Length = 175139

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tataaataaaattattatca 114
              ||||||||||||||||||||
Sbjct: 115375 tataaataaaattattatca 115356
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>emb|BX547993.5| Zebrafish DNA sequence from clone CH211-282E16 in linkage group 19,
             complete sequence
          Length = 108908

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   aagctcttcttgttcttttt 419
             ||||||||||||||||||||
Sbjct: 56623 aagctcttcttgttcttttt 56642
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>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147895

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   atgcaaataactgaaaaccc 210
             ||||||||||||||||||||
Sbjct: 73302 atgcaaataactgaaaaccc 73283
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>gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, complete sequence
          Length = 150962

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    tgtcatctattcagcatttc 303
              ||||||||||||||||||||
Sbjct: 132268 tgtcatctattcagcatttc 132287
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>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
          Length = 641454

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tataaataaaattattatca 114
              ||||||||||||||||||||
Sbjct: 450088 tataaataaaattattatca 450069
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>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 406     ttcttgttcttttttggtga 425
               ||||||||||||||||||||
Sbjct: 1121201 ttcttgttcttttttggtga 1121182
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>gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete sequence
          Length = 190066

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   tcttcttgttcttttttggt 423
             ||||||||||||||||||||
Sbjct: 50478 tcttcttgttcttttttggt 50497
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>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence
          Length = 185452

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ataaataaaattattatcac 115
             ||||||||||||||||||||
Sbjct: 85274 ataaataaaattattatcac 85255
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>dbj|AB073156.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC
             clone:F13F19
          Length = 97397

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 122   ttgtcgtatatgcacaaataaagctttg 149
             ||||||||||||||||||| ||| ||||
Sbjct: 47697 ttgtcgtatatgcacaaattaagttttg 47724
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>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 229681

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    agctcttcttgttctttttt 420
              ||||||||||||||||||||
Sbjct: 199129 agctcttcttgttctttttt 199110
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>emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chromosome 2, complete
              sequence
          Length = 182273

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    ttcttttttggtgaatggcc 431
              ||||||||||||||||||||
Sbjct: 174428 ttcttttttggtgaatggcc 174409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,898,117
Number of Sequences: 3902068
Number of extensions: 6898117
Number of successful extensions: 154573
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154219
Number of HSP's gapped (non-prelim): 352
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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