>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 699

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 30/77 (38%), Positives = 46/77 (59%)
 Frame = -1

Query: 505 SAFQRVKSEDIKFADERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXX 326
           S F+RV+ E+I+  D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE        
Sbjct: 623 SPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGS 681

Query: 325 XXXGFIDLQTHSIKFNN 275
              G I +Q +SIKF++
Sbjct: 682 YRGGSISVQVNSIKFDS 698

>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 704

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 29/77 (37%), Positives = 46/77 (59%)
 Frame = -1

Query: 505 SAFQRVKSEDIKFADERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXX 326
           S F+RV+ E+I+  D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE        
Sbjct: 628 SPFRRVREEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGS 686

Query: 325 XXXGFIDLQTHSIKFNN 275
              G I +Q +S+KF++
Sbjct: 687 YRGGSISVQVNSVKFDS 703

>SRP40_YEAST (P32583) Suppressor protein SRP40|
          Length = 406

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 28/75 (37%), Positives = 35/75 (46%)
 Frame = -1

Query: 499 FQRVKSEDIKFADERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXX 320
           F RV    I F    L DN+Y    GA   +G KA E LG+VRG+DF             
Sbjct: 335 FSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYR 391

Query: 319 XGFIDLQTHSIKFNN 275
            G I L++ S KF +
Sbjct: 392 GGSITLESGSYKFQD 406

>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor|
          Length = 332

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 450 KIIRIGLRVVLTLGTV--RRHRRFLDKLEEGILGTRRPRRSAEPT 322
           K+I+  LR+V+++     +R+  FLD ++EG LG  R     +PT
Sbjct: 100 KMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPT 144

>VG12_BPP22 (P03006) Replicative DNA helicase (EC 3.6.1.-) (Replication protein|
           gp12)
          Length = 458

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 432 LRVVLTLGTVRRHRRFLDKLEEGILGTRRPRRSAEPTRVGSLI 304
           +R  ++ GT+    R +D+L + +   R+PR   +P R+G +I
Sbjct: 109 MREPISNGTLDASGRAMDELVKRLSSIRKPRNEVKPVRLGEII 151

>YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid prophage e14 region|
          Length = 263

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 484 SEDIKFADERLQDNSYWA-KGGADSGYGAKAQEILGQVRGRDFRH 353
           +E+++    R+ +  YW  +GGAD  Y   A+E+ G  R   +RH
Sbjct: 87  TEELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRH 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,925,047
Number of Sequences: 219361
Number of extensions: 1315291
Number of successful extensions: 3178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)