ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB118018.1| Oryza sativa (japonica cultivar-group) bip132 mR... 214 2e-52
2dbj|AK101273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
3gb|AY111278.1| Zea mays CL31341_-1 mRNA sequence 127 4e-26
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 100 9e-18
6emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327... 100 9e-18
7gb|AC174357.6| Medicago truncatula clone mth2-26c10, complete se... 56 1e-04
8gb|AC126781.22| Medicago truncatula clone mth2-12m15, complete s... 56 1e-04
9gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswel... 52 0.002
10ref|NM_168941.2| Drosophila melanogaster Nopp140 CG7421-RA, tran... 52 0.002
11ref|NM_168940.1| Drosophila melanogaster Nopp140 CG7421-RB, tran... 52 0.002
12gb|AY061181.1| Drosophila melanogaster LD14807 full length cDNA 52 0.002
13gb|BT021407.1| Drosophila melanogaster LD06749 full insert cDNA 52 0.002
14gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76... 52 0.002
15gb|AF162774.2| Drosophila melanogaster Nopp140-like nucleolar pr... 52 0.002
16ref|NM_125094.2| Arabidopsis thaliana unknown protein AT5G57120 ... 44 0.44
17gb|CP000114.1| Streptococcus agalactiae A909, complete genome 44 0.44
18gb|AE014212.1| Streptococcus agalactiae 2603V/R section 22 of 10... 44 0.44
19emb|AL766845.1|SAG766845 Streptococcus agalactiae NEM316 complet... 44 0.44
20gb|AY127952.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, compl... 44 0.44
21gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 44 0.44
22gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomi... 44 0.44
23gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromo... 44 0.44
24gb|AY056089.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, compl... 44 0.44
25gb|AY045686.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, compl... 44 0.44
26gb|AY037212.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, compl... 44 0.44
27gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromo... 44 0.44
28gb|AC172373.3| Pan troglodytes BAC clone CH251-1081D19 from chro... 44 0.44
29gb|AY084589.1| Arabidopsis thaliana clone 11265 mRNA, complete s... 44 0.44
30gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromo... 44 0.44
31gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromo... 44 0.44
32gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chrom... 44 0.44
33gb|AC163727.3| Pan troglodytes BAC clone CH251-1132L6 from chrom... 44 0.44
34dbj|AP006140.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.44
35gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomi... 42 1.7
36gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete se... 42 1.7
37gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chrom... 42 1.7
38ref|XM_457674.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 6.8
39gb|AC151903.3| Mus musculus BAC clone RP23-216I7 from chromosome... 40 6.8
40gb|BT006020.1| Drosophila melanogaster GM04911 full insert cDNA 40 6.8
41gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome... 40 6.8
42emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 6.8
43ref|NM_001039730.1| Xenopus tropicalis nucleolar and coiled-body... 40 6.8
44emb|AL121800.1|DMBN5I9 Drosophila melanogaster BAC clone BACN5I9 40 6.8
45emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chrom... 40 6.8
46emb|AL731821.10| Mouse DNA sequence from clone RP23-81G15 on chr... 40 6.8
47gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell ... 40 6.8
48dbj|AK137575.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 6.8
49gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, comple... 40 6.8
50emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 ... 40 6.8
51emb|AJ011432.1|RNO011432 Rattus norvegicus gdnf gene 40 6.8
52emb|CR848207.2| Xenopus tropicalis finished cDNA, clone TGas105h10 40 6.8
53gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 ... 40 6.8
54gb|AC124711.3| Mus musculus BAC clone RP24-100M12 from 12, compl... 40 6.8
55gb|AF023840.1|AF023840 Homo sapiens natural killer group protein... 40 6.8
56gb|BC064870.1| Xenopus tropicalis nucleolar and coiled-body phos... 40 6.8 
>dbj|AB118018.1| Oryza sativa (japonica cultivar-group) bip132 mRNA for BRI1-KD
           interacting protein 132, partial cds
          Length = 1131

 Score =  214 bits (108), Expect = 2e-52
 Identities = 213/248 (85%)
 Strand = Plus / Minus

                                                                       
Query: 256 gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 315
           ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| ||   ||
Sbjct: 869 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 810

                                                                       
Query: 316 cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaa 375
           ||||| |||||||||| |||||||||||||||||||| || |||||  ||||||||||||
Sbjct: 809 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaagccccttcctctaa 750

                                                                       
Query: 376 cttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcaccacccttagccc 435
           |||| ||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 749 cttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcaccacccttagccc 690

                                                                       
Query: 436 aatacgaattatcttgtagtctttcatcagcaaatttaatatcttcactcttcacccgtt 495
           |||| || ||||| || || || |||||||||||||||| ||| ||    ||||||||||
Sbjct: 689 aatatgagttatcctgaagcctatcatcagcaaatttaacatcctctagtttcacccgtt 630

                   
Query: 496 ggaatgca 503
           | ||||||
Sbjct: 629 gaaatgca 622
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>dbj|AK101273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033A11, full
            insert sequence
          Length = 1604

 Score =  214 bits (108), Expect = 2e-52
 Identities = 213/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 256  gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 315
            ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| ||   ||
Sbjct: 1361 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 1302

                                                                        
Query: 316  cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaa 375
            ||||| |||||||||| |||||||||||||||||||| || |||||  ||||||||||||
Sbjct: 1301 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaagccccttcctctaa 1242

                                                                        
Query: 376  cttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcaccacccttagccc 435
            |||| ||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 1241 cttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcaccacccttagccc 1182

                                                                        
Query: 436  aatacgaattatcttgtagtctttcatcagcaaatttaatatcttcactcttcacccgtt 495
            |||| || ||||| || || || |||||||||||||||| ||| ||    ||||||||||
Sbjct: 1181 aatatgagttatcctgaagcctatcatcagcaaatttaacatcctctagtttcacccgtt 1122

                    
Query: 496  ggaatgca 503
            | ||||||
Sbjct: 1121 gaaatgca 1114
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>gb|AY111278.1| Zea mays CL31341_-1 mRNA sequence
          Length = 625

 Score =  127 bits (64), Expect = 4e-26
 Identities = 173/211 (81%)
 Strand = Plus / Plus

                                                                       
Query: 260 tcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacccacc 319
           |||||||||||||||||| |  ||||| |||||||||||||| || || ||   ||| ||
Sbjct: 245 tcactcgtcgtctgaattctcgaacttgatcgagtgggtttgcaggtcgatttgcccgcc 304

                                                                       
Query: 320 cttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
           | ||||||| || |||||||||||||| ||||||||||||||     ||||  | |||||
Sbjct: 305 cctgtaggtgccacgcttcttcttggttttctcgtgcctaaannnnnttcccttgacttg 364

                                                                       
Query: 380 tccaagaatctcctgtgccttcgcaccgtacccagagtcagcaccacccttagcccaata 439
            ||||| |||||||||||||| || ||||| || | ||| || |||||||||||||||||
Sbjct: 365 gccaaggatctcctgtgcctttgcgccgtaaccggtgtctgcgccacccttagcccaata 424

                                          
Query: 440 cgaattatcttgtagtctttcatcagcaaat 470
           ||| ||||| || || || ||||| ||||||
Sbjct: 425 cgagttatcctgaagcctgtcatctgcaaat 455
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 92/106 (86%)
 Strand = Plus / Minus

                                                                            
Query: 256      gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 315
                ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| ||   ||
Sbjct: 26026469 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 26026410

                                                              
Query: 316      cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaa 361
                ||||| |||||||||| |||||||||||||||||||| || |||||
Sbjct: 26026409 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaa 26026364



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 365      ccttcctctaacttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcacc 424
                ||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| |||||
Sbjct: 26026236 ccttcctctaacttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcacc 26026177

                     
Query: 425      accct 429
                |||||
Sbjct: 26026176 accct 26026172



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 427      ccttagcccaatacgaattatcttgtagtctttcatcagcaaatttaatatcttcactct 486
                ||||||||||||| || ||||| || || || |||||||||||||||| ||| ||    |
Sbjct: 26025596 ccttagcccaatatgagttatcctgaagcctatcatcagcaaatttaacatcctctagtt 26025537

                                 
Query: 487      tcacccgttggaatgca 503
                |||||||||| ||||||
Sbjct: 26025536 tcacccgttgaaatgca 26025520
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 92/106 (86%)
 Strand = Plus / Minus

                                                                            
Query: 256      gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 315
                ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| ||   ||
Sbjct: 25954645 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 25954586

                                                              
Query: 316      cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaa 361
                ||||| |||||||||| |||||||||||||||||||| || |||||
Sbjct: 25954585 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaa 25954540



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 365      ccttcctctaacttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcacc 424
                ||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| |||||
Sbjct: 25954412 ccttcctctaacttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcacc 25954353

                     
Query: 425      accct 429
                |||||
Sbjct: 25954352 accct 25954348



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 427      ccttagcccaatacgaattatcttgtagtctttcatcagcaaatttaatatcttcactct 486
                ||||||||||||| || ||||| || || || |||||||||||||||| ||| ||    |
Sbjct: 25953772 ccttagcccaatatgagttatcctgaagcctatcatcagcaaatttaacatcctctagtt 25953713

                                 
Query: 487      tcacccgttggaatgca 503
                |||||||||| ||||||
Sbjct: 25953712 tcacccgttgaaatgca 25953696
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>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161806

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                         
Query: 256   gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 315
             ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| ||   ||
Sbjct: 85202 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 85261

                                                           
Query: 316   cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaa 361
             ||||| |||||||||| |||||||||||||||||||| || |||||
Sbjct: 85262 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaa 85307



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 365   ccttcctctaacttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcacc 424
             ||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| |||||
Sbjct: 85435 ccttcctctaacttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcacc 85494

                  
Query: 425   accct 429
             |||||
Sbjct: 85495 accct 85499



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 427   ccttagcccaatacgaattatcttgtagtctttcatcagcaaatttaatatcttcactct 486
             ||||||||||||| || ||||| || || || |||||||||||||||| ||| ||    |
Sbjct: 86075 ccttagcccaatatgagttatcctgaagcctatcatcagcaaatttaacatcctctagtt 86134

                              
Query: 487   tcacccgttggaatgca 503
             |||||||||| ||||||
Sbjct: 86135 tcacccgttgaaatgca 86151
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>gb|AC174357.6| Medicago truncatula clone mth2-26c10, complete sequence
          Length = 98743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                         
Query: 260   tcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacccacc 319
             |||||| || |||||||  ||||||||||  |||||||  |||| |||||| |  |||||
Sbjct: 95178 tcactcctcatctgaataattaaacttaactgagtgggaatgtaaatcaataagtccacc 95237

                                                             
Query: 320   cttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatccct 367
             | | ||||| || || |||||||||||||| ||||| | |||||||||
Sbjct: 95238 cctataggtcccacgtttcttcttggtcttttcgtggcgaaaatccct 95285
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>gb|AC126781.22| Medicago truncatula clone mth2-12m15, complete sequence
          Length = 116119

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Minus

                                                                          
Query: 260    tcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacccacc 319
              |||||| || |||||||  ||||||||||  |||||||  |||| |||||| |  |||||
Sbjct: 105883 tcactcctcatctgaataattaaacttaactgagtgggaatgtaaatcaataagtccacc 105824

                                                              
Query: 320    cttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatccct 367
              | | ||||| || || |||||||||||||| ||||| | |||||||||
Sbjct: 105823 cctataggtcccacgtttcttcttggtcttttcgtggcgaaaatccct 105776
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>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 178607

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 330   ccgcgcttcttcttggtcttctcgtg 355
             ||||||||||||||||||||||||||
Sbjct: 50329 ccgcgcttcttcttggtcttctcgtg 50304
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>ref|NM_168941.2| Drosophila melanogaster Nopp140 CG7421-RA, transcript variant A
            (Nopp140), mRNA
          Length = 3104

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 330  ccgcgcttcttcttggtcttctcgtg 355
            ||||||||||||||||||||||||||
Sbjct: 2497 ccgcgcttcttcttggtcttctcgtg 2472
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>ref|NM_168940.1| Drosophila melanogaster Nopp140 CG7421-RB, transcript variant B
            (Nopp140), mRNA
          Length = 2747

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 330  ccgcgcttcttcttggtcttctcgtg 355
            ||||||||||||||||||||||||||
Sbjct: 2140 ccgcgcttcttcttggtcttctcgtg 2115
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>gb|AY061181.1| Drosophila melanogaster LD14807 full length cDNA
          Length = 1585

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 330 ccgcgcttcttcttggtcttctcgtg 355
           ||||||||||||||||||||||||||
Sbjct: 961 ccgcgcttcttcttggtcttctcgtg 936
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>gb|BT021407.1| Drosophila melanogaster LD06749 full insert cDNA
          Length = 3072

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 330  ccgcgcttcttcttggtcttctcgtg 355
            ||||||||||||||||||||||||||
Sbjct: 2457 ccgcgcttcttcttggtcttctcgtg 2432
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>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete
              sequence
          Length = 294272

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 330    ccgcgcttcttcttggtcttctcgtg 355
              ||||||||||||||||||||||||||
Sbjct: 255589 ccgcgcttcttcttggtcttctcgtg 255564
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>gb|AF162774.2| Drosophila melanogaster Nopp140-like nucleolar protein (Nopp140)
            mRNA, complete cds
          Length = 3028

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 330  ccgcgcttcttcttggtcttctcgtg 355
            ||||||||||||||||||||||||||
Sbjct: 2399 ccgcgcttcttcttggtcttctcgtg 2374
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>ref|NM_125094.2| Arabidopsis thaliana unknown protein AT5G57120 mRNA, complete cds
          Length = 1333

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 322  tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
            ||||| |||| || |||||||| |||||||| || |  |||||||||||||| |||||
Sbjct: 1041 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 984
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 454    gtctttcatcagcaaatttaatatct 479
              ||||||||||| ||||||||||||||
Sbjct: 500933 gtctttcatcatcaaatttaatatct 500908
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>gb|AE014212.1| Streptococcus agalactiae 2603V/R section 22 of 100 of the complete
             genome
          Length = 20965

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 454   gtctttcatcagcaaatttaatatct 479
             ||||||||||| ||||||||||||||
Sbjct: 18968 gtctttcatcatcaaatttaatatct 18943
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>emb|AL766845.1|SAG766845 Streptococcus agalactiae NEM316 complete genome, segment 3
          Length = 178050

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 454    gtctttcatcagcaaatttaatatct 479
              ||||||||||| ||||||||||||||
Sbjct: 143460 gtctttcatcatcaaatttaatatct 143435
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>gb|AY127952.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds
          Length = 993

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 322 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
           ||||| |||| || |||||||| |||||||| || |  |||||||||||||| |||||
Sbjct: 928 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 871
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 452      tagtctttcatcagcaaatttaatat 477
                ||||||||||||||||| ||||||||
Sbjct: 10217359 tagtctttcatcagcaagtttaatat 10217384
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>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold
          Length = 276070

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 452    tagtctttcatcagcaaatttaatat 477
              ||||||||||||||||| ||||||||
Sbjct: 131368 tagtctttcatcagcaagtttaatat 131393
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>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete
              sequence
          Length = 225200

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 452    tagtctttcatcagcaaatttaatat 477
              ||||||||||||||||| ||||||||
Sbjct: 210424 tagtctttcatcagcaagtttaatat 210449
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>gb|AY056089.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds
          Length = 549

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 322 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
           ||||| |||| || |||||||| |||||||| || |  |||||||||||||| |||||
Sbjct: 484 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 427
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>gb|AY045686.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds
          Length = 1258

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 322  tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
            ||||| |||| || |||||||| |||||||| || |  |||||||||||||| |||||
Sbjct: 1037 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 980
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>gb|AY037212.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds
          Length = 1279

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 322  tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
            ||||| |||| || |||||||| |||||||| || |  |||||||||||||| |||||
Sbjct: 1036 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 979
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>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete
             sequence
          Length = 196548

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 452   tagtctttcatcagcaaatttaatat 477
             ||||||||||||||||| ||||||||
Sbjct: 51840 tagtctttcatcagcaagtttaatat 51865
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>gb|AC172373.3| Pan troglodytes BAC clone CH251-1081D19 from chromosome y, complete
              sequence
          Length = 194913

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 452    tagtctttcatcagcaaatttaatat 477
              ||||||||||||||||| ||||||||
Sbjct: 168646 tagtctttcatcagcaagtttaatat 168621
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>gb|AY084589.1| Arabidopsis thaliana clone 11265 mRNA, complete sequence
          Length = 1258

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 322  tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 379
            ||||| |||| || |||||||| |||||||| || |  |||||||||||||| |||||
Sbjct: 1041 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 984
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>gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromosome y, complete
             sequence
          Length = 185225

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 452   tagtctttcatcagcaaatttaatat 477
             ||||||||||||||||| ||||||||
Sbjct: 13858 tagtctttcatcagcaactttaatat 13833
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>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete
             sequence
          Length = 206451

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 452   tagtctttcatcagcaaatttaatat 477
             ||||||||||||||||| ||||||||
Sbjct: 66751 tagtctttcatcagcaagtttaatat 66776
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>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete
             sequence
          Length = 165274

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 452   tagtctttcatcagcaaatttaatat 477
             ||||||||||||||||| ||||||||
Sbjct: 99825 tagtctttcatcagcaagtttaatat 99800
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>gb|AC163727.3| Pan troglodytes BAC clone CH251-1132L6 from chromosome y, complete
              sequence
          Length = 191546

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 452    tagtctttcatcagcaaatttaatat 477
              ||||||||||||||||| ||||||||
Sbjct: 131354 tagtctttcatcagcaagtttaatat 131379
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>dbj|AP006140.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT37A01, TM0244,
             complete sequence
          Length = 102724

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 365   ccttcctctaacttgtccaagaatctcctgtgccttcgcacc 406
             ||||||||||||||| |||||||| || ||||| || |||||
Sbjct: 88860 ccttcctctaacttggccaagaatttcttgtgcttttgcacc 88819



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 279   ttaaacttaatcgagtgggtttgtagatcaat 310
             |||||||| || ||||||| ||||||||||||
Sbjct: 89299 ttaaactttattgagtgggattgtagatcaat 89268
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>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold
          Length = 331329

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 452    tagtctttcatcagcaaatttaata 476
              ||||||||||||||||| |||||||
Sbjct: 194965 tagtctttcatcagcaagtttaata 194989
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>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence
          Length = 86223

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 52    aaaatggtacgtctcactgag 72
             |||||||||||||||||||||
Sbjct: 52718 aaaatggtacgtctcactgag 52698
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>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete
             sequence
          Length = 207364

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 452   tagtctttcatcagcaaatttaata 476
             ||||||||||||||||| |||||||
Sbjct: 71013 tagtctttcatcagcaagtttaata 71037
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>ref|XM_457674.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B16775g)
            partial mRNA
          Length = 4527

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ttcaatgcttttgcttcttt 157
            ||||||||||||||||||||
Sbjct: 1687 ttcaatgcttttgcttcttt 1706
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>gb|AC151903.3| Mus musculus BAC clone RP23-216I7 from chromosome 14, complete sequence
          Length = 232727

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   atggggaaatgtcacaagac 242
             ||||||||||||||||||||
Sbjct: 38280 atggggaaatgtcacaagac 38299
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>gb|BT006020.1| Drosophila melanogaster GM04911 full insert cDNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 acaattcaatgcttttgctt 153
           ||||||||||||||||||||
Sbjct: 850 acaattcaatgcttttgctt 869
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>gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome 14, complete sequence
          Length = 185254

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   atggggaaatgtcacaagac 242
             ||||||||||||||||||||
Sbjct: 56739 atggggaaatgtcacaagac 56720
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
               hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 138     ttcaatgcttttgcttcttt 157
               ||||||||||||||||||||
Sbjct: 1322806 ttcaatgcttttgcttcttt 1322787
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>ref|NM_001039730.1| Xenopus tropicalis nucleolar and coiled-body phosphoprotein 1
            (nolc1), mRNA
          Length = 3167

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  ttcttcttggtcttctcgtg 355
            ||||||||||||||||||||
Sbjct: 2711 ttcttcttggtcttctcgtg 2692
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>emb|AL121800.1|DMBN5I9 Drosophila melanogaster BAC clone BACN5I9
          Length = 96433

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   acaattcaatgcttttgctt 153
             ||||||||||||||||||||
Sbjct: 10167 acaattcaatgcttttgctt 10148
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>emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chromosome 11 Contains the
             3' end of a novel gene, two novel genes, the 5' end of the
             Brip1 gene for BRCA1 interacting protein C-terminal
             helicase 1 and a mitochondrial F0 complex H+ transporting
             ATP synthase subunit g (Atp5l) pseudogene, complete
             sequence
          Length = 200624

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ggggaaatgtcacaagactt 244
             ||||||||||||||||||||
Sbjct: 82763 ggggaaatgtcacaagactt 82744
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>emb|AL731821.10| Mouse DNA sequence from clone RP23-81G15 on chromosome 4, complete
              sequence
          Length = 126671

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ttcttcctttcagcaagact 201
              ||||||||||||||||||||
Sbjct: 104222 ttcttcctttcagcaagact 104241
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>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 175996

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    acaattcaatgcttttgctt 153
              ||||||||||||||||||||
Sbjct: 157371 acaattcaatgcttttgctt 157352
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>dbj|AK137575.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830145M22 product:hypothetical protein,
            full insert sequence
          Length = 2315

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  ggggaaatgtcacaagactt 244
            ||||||||||||||||||||
Sbjct: 1329 ggggaaatgtcacaagactt 1348
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>gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, complete sequence
          Length = 143642

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  tgccttcacttcttcctttc 192
            ||||||||||||||||||||
Sbjct: 6810 tgccttcacttcttcctttc 6791
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>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16,
              complete sequence
          Length = 196875

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    acaacaattcaatgcttttg 150
              ||||||||||||||||||||
Sbjct: 144733 acaacaattcaatgcttttg 144714
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>emb|AJ011432.1|RNO011432 Rattus norvegicus gdnf gene
          Length = 19571

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   gttccgcgcttcttcttggt 346
             ||||||||||||||||||||
Sbjct: 10199 gttccgcgcttcttcttggt 10218
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>emb|CR848207.2| Xenopus tropicalis finished cDNA, clone TGas105h10
          Length = 3167

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  ttcttcttggtcttctcgtg 355
            ||||||||||||||||||||
Sbjct: 2711 ttcttcttggtcttctcgtg 2692
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>gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 of 74 of the complete
             sequence
          Length = 213230

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   acaattcaatgcttttgctt 153
             ||||||||||||||||||||
Sbjct: 47045 acaattcaatgcttttgctt 47064
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>gb|AC124711.3| Mus musculus BAC clone RP24-100M12 from 12, complete sequence
          Length = 225134

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   tctttcatcagcaaatttaa 474
             ||||||||||||||||||||
Sbjct: 82601 tctttcatcagcaaatttaa 82620
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>gb|AF023840.1|AF023840 Homo sapiens natural killer group protein 2-A (NKG2-A) gene, complete
            cds
          Length = 17549

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 287  aatcgagtgggtttgtagatcaat 310
            |||| |||||||||||||||||||
Sbjct: 3272 aatctagtgggtttgtagatcaat 3295
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>gb|BC064870.1| Xenopus tropicalis nucleolar and coiled-body phosphoprotein 1, mRNA
            (cDNA clone IMAGE:5335805), partial cds
          Length = 3154

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  ttcttcttggtcttctcgtg 355
            ||||||||||||||||||||
Sbjct: 2685 ttcttcttggtcttctcgtg 2666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,843,923
Number of Sequences: 3902068
Number of extensions: 4843923
Number of successful extensions: 90628
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90449
Number of HSP's gapped (non-prelim): 173
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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