Clone Name | rbart28a03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_506746.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.15 mRNA Length = 1000 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 619 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 618 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcg 575 Score = 73.8 bits (37), Expect = 5e-10 Identities = 200/248 (80%), Gaps = 16/248 (6%) Strand = Plus / Minus Query: 58 gatgaaccattgctggttactattactgatcagaatttaacacacatgggacaatagtac 117 |||| |||||||||| | |||||||||||| ||| || || ||||||||| |||||| Sbjct: 1000 gatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca-tagtac 942 Query: 118 ataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccaccatgaata 177 || | |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| Sbjct: 941 atca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccaccaagaata 886 Query: 178 aag-ttacacaa---------cacgcaaaccattcggaatgactgagaggattgagttct 227 ||| |||||||| ||||||||||| | | ||||||||||||| || |||| Sbjct: 885 aagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat-gaattct 827 Query: 228 tgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgtggcagcc 287 | | ||||||| || |||||||||||||| | | | |||||||| ||||||| |||||| Sbjct: 826 ttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgtagcagcc 767 Query: 288 aacaagaa 295 ||||||| Sbjct: 766 gacaagaa 759
>ref|XM_464458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 991 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 602 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 601 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcg 558 Score = 87.7 bits (44), Expect = 3e-14 Identities = 207/255 (81%), Gaps = 16/255 (6%) Strand = Plus / Minus Query: 51 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 110 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 990 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 931 Query: 111 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 170 |||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 930 -tagtacatca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccacc 876 Query: 171 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 220 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 875 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 817 Query: 221 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 280 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 816 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 757 Query: 281 ggcagccaacaagaa 295 |||||| ||||||| Sbjct: 756 agcagccgacaagaa 742
>dbj|AK061911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A06, full insert sequence Length = 991 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 602 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 601 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcg 558 Score = 79.8 bits (40), Expect = 8e-12 Identities = 206/255 (80%), Gaps = 16/255 (6%) Strand = Plus / Minus Query: 51 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 110 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 990 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 931 Query: 111 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 170 |||||||| | |||||||||| ||| ||||| ||||||||||||||||||| ||||| Sbjct: 930 -tagtacatca-cagagctagccaaa-tgagacaccacaatactgaccgaaaa--ccacc 876 Query: 171 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 220 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 875 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 817 Query: 221 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 280 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 816 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 757 Query: 281 ggcagccaacaagaa 295 |||||| ||||||| Sbjct: 756 agcagccgacaagaa 742
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Plus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5346040 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 5346099 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 5346100 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcg 5346143 Score = 87.7 bits (44), Expect = 3e-14 Identities = 207/255 (81%), Gaps = 16/255 (6%) Strand = Plus / Plus Query: 51 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 110 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 5345711 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 5345770 Query: 111 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 170 |||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 5345771 -tagtacatca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccacc 5345825 Query: 171 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 220 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 5345826 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 5345884 Query: 221 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 280 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 5345885 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 5345944 Query: 281 ggcagccaacaagaa 295 |||||| ||||||| Sbjct: 5345945 agcagccgacaagaa 5345959
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Plus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 72343 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 72402 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 72403 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcg 72446 Score = 87.7 bits (44), Expect = 3e-14 Identities = 207/255 (81%), Gaps = 16/255 (6%) Strand = Plus / Plus Query: 51 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 110 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 72014 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 72073 Query: 111 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 170 |||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 72074 -tagtacatca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccacc 72128 Query: 171 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 220 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 72129 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 72187 Query: 221 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 280 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 72188 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 72247 Query: 281 ggcagccaacaagaa 295 |||||| ||||||| Sbjct: 72248 agcagccgacaagaa 72262
>dbj|AK067403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E09, full insert sequence Length = 1000 Score = 174 bits (88), Expect = 2e-40 Identities = 100/104 (96%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 619 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 618 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcg 575 Score = 73.8 bits (37), Expect = 5e-10 Identities = 200/248 (80%), Gaps = 16/248 (6%) Strand = Plus / Minus Query: 58 gatgaaccattgctggttactattactgatcagaatttaacacacatgggacaatagtac 117 |||| |||||||||| | |||||||||||| ||| || || ||||||||| |||||| Sbjct: 1000 gatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca-tagtac 942 Query: 118 ataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccaccatgaata 177 || | |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| Sbjct: 941 atca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccaccaagaata 886 Query: 178 aag-ttacacaa---------cacgcaaaccattcggaatgactgagaggattgagttct 227 ||| |||||||| ||||||||||| | | ||||||||||||| || |||| Sbjct: 885 aagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat-gaattct 827 Query: 228 tgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgtggcagcc 287 | | ||||||| || |||||||||||||| | | | |||||||| ||||||| |||||| Sbjct: 826 ttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgtagcagcc 767 Query: 288 aacaagaa 295 ||||||| Sbjct: 766 gacaagaa 759
>gb|AY105867.1| Zea mays PCO143262 mRNA sequence Length = 984 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 |||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||| Sbjct: 600 atcttgtcaagcttctccgccttcaccactggattggccttggcgatagcgtccctagct 541 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||| || ||||||||||||||||| || |||||||| ||||| Sbjct: 540 gcagttcgatagtcgaactggcagtcgtgtttgtcggagtagcg 497 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 224 ttcttgcagctgccacgacgcagtgtgcatca 255 ||||||||||||||| || || |||||||||| Sbjct: 759 ttcttgcagctgccaggatgctgtgtgcatca 728
>gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complete cds Length = 1000 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 |||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 616 cctagatcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 557 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 | || ||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct: 556 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcg 508
>gb|BT016379.1| Zea mays clone Contig212 mRNA sequence Length = 1020 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 |||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 632 cctagatcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 573 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 | || ||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct: 572 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcg 524
>gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, complete cds Length = 1162 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 |||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 808 cctagatcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 749 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 | || ||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct: 748 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcg 700
>gb|AY109331.1| Zea mays CL253_2 mRNA sequence Length = 2256 Score = 119 bits (60), Expect = 9e-24 Identities = 93/104 (89%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 |||||||||||||| |||||||||||||| || || |||||||| ||||| ||||| || Sbjct: 1607 atcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccctggca 1548 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 ||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct: 1547 gcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcg 1504
>gb|BT019326.1| Zea mays clone Contig1045.F mRNA sequence Length = 779 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||| ||||||| || ||||||||||| || || ||||| ||| Sbjct: 289 atcttgtcgagcttctccgccctcaccacaggattggccttggcaatcgcgtcccttgct 230 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 229 gcagtccgatagtcgaactgacagtcatgtttgtcggagtagcg 186
>gb|AY105966.1| Zea mays PCO143261 mRNA sequence Length = 1035 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 378 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 437 ||||||||||||||||| ||| ||||||| || ||||||||||| || || ||||| ||| Sbjct: 601 atcttgtcgagcttctccgccctcaccacaggattggccttggcaatcgcgtcccttgct 542 Query: 438 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 541 gcagtccgatagtcgaactgacagtcatgtttgtcggagtagcg 498
>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence Length = 941 Score = 109 bits (55), Expect = 8e-21 Identities = 91/103 (88%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 |||| |||||| ||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 638 cctagatcttggcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 579 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcgga 475 | || ||||||||||||||||||| |||||| ||||||||||| Sbjct: 578 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcgga 536
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 577 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 518 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 517 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 469 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 853 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 810 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 639 cagcaaagatggatgatgaa 620
>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence Length = 391 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 123 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 64 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 63 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 15 Score = 40.1 bits (20), Expect = 6.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 122 acagagctagctaaaatgagaagccacaatac 153 |||||||||||| ||||| ||||||||||||| Sbjct: 386 acagagctagct-aaatgcgaagccacaatac 356 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 185 cagcaaagatggatgatgaa 166
>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence Length = 391 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 123 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 64 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 63 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 15 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 185 cagcaaagatggatgatgaa 166
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 24109922 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 24109863 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 24109862 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 24109814 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 24110198 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 24110155 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 24109984 cagcaaagatggatgatgaa 24109965
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 43380 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 43321 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 43320 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 43272 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 43656 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 43613 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 43442 cagcaaagatggatgatgaa 43423
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 119615 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 119556 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 119555 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 119507 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 119891 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 119848 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 119677 cagcaaagatggatgatgaa 119658
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 666 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 607 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 606 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 558 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 942 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 899 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 728 cagcaaagatggatgatgaa 709
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 666 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 607 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 606 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 558 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 942 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 899 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 728 cagcaaagatggatgatgaa 709
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 667 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 608 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 607 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 559 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 943 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 900 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 729 cagcaaagatggatgatgaa 710
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 664 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 605 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 604 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 556 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 940 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 897 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 726 cagcaaagatggatgatgaa 707
>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full insert sequence Length = 631 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 305 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 246 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 245 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 197 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 581 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 538 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 367 cagcaaagatggatgatgaa 348
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 373 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 432 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 663 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 604 Query: 433 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcg 481 |||| || ||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 603 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcg 555 Score = 44.1 bits (22), Expect = 0.42 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 108 acaatagtacataaacagagctagctaaaatgagaagccacaatac 153 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 939 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 896 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cagcaaagatggatgatgaa 335 |||||||||||||||||||| Sbjct: 725 cagcaaagatggatgatgaa 706
>gb|AC145839.3| Microcebus murinus clone CH257-408H17, complete sequence Length = 172417 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 atactcaaatatgtgaaatgaa 43 |||||||||||||||||||||| Sbjct: 131727 atactcaaatatgtgaaatgaa 131748
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 atactcaaatatgtgaaatgaa 43 |||||||||||||||||||||| Sbjct: 131727 atactcaaatatgtgaaatgaa 131748
>gb|AC108806.10| Mus musculus chromosome 14, clone RP23-246G7, complete sequence Length = 189619 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 actattactgatcagaattta 96 ||||||||||||||||||||| Sbjct: 65007 actattactgatcagaattta 65027
>gb|AC104797.3| Homo sapiens BAC clone RP11-327I3 from 4, complete sequence Length = 57338 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cttggcagattgcaaccattt 357 ||||||||||||||||||||| Sbjct: 56838 cttggcagattgcaaccattt 56858
>gb|AC097514.3| Homo sapiens BAC clone RP11-425J20 from 4, complete sequence Length = 177027 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cttggcagattgcaaccattt 357 ||||||||||||||||||||| Sbjct: 1500 cttggcagattgcaaccattt 1520
>gb|AC011345.5| Homo sapiens chromosome 5 clone CTC-293E5, complete sequence Length = 105797 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 aatactgaccgaaaaaaccac 169 ||||||||||||||||||||| Sbjct: 63131 aatactgaccgaaaaaaccac 63151
>emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in linkage group 20, complete sequence Length = 128871 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 taaacatgattcaacatactcaaat 31 |||||||||||||| |||||||||| Sbjct: 21979 taaacatgattcaaaatactcaaat 22003
>emb|CT025686.7| Mouse DNA sequence from clone RP24-273I13 on chromosome 14, complete sequence Length = 186233 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 actattactgatcagaattta 96 ||||||||||||||||||||| Sbjct: 102056 actattactgatcagaattta 102036
>gb|AC091677.12| Mus musculus chromosome 18, clone RP23-131E5, complete sequence Length = 222121 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 gatggcatccctagctgcag 441 |||||||||||||||||||| Sbjct: 181645 gatggcatccctagctgcag 181626
>gb|AC147160.2| Mus musculus BAC clone RP24-336A22 from chromosome 15, complete sequence Length = 205374 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aacatactcaaatatgtgaa 38 |||||||||||||||||||| Sbjct: 18674 aacatactcaaatatgtgaa 18693
>ref|XM_444959.1| Candida glabrata CBS138 hypothetical protein (CAGL0A04411g) partial mRNA Length = 1968 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcaaagatggatgatgaacc 337 |||||||||||||||||||| Sbjct: 1567 gcaaagatggatgatgaacc 1586
>gb|AC125202.3| Mus musculus BAC clone RP23-231N20 from chromosome 19, complete sequence Length = 207191 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 atactcaaatatgtgaaatgaact 45 ||||||||||||| |||||||||| Sbjct: 145509 atactcaaatatgagaaatgaact 145486
>gb|AC010091.2| Homo sapiens BAC clone RP11-295A1 from 7, complete sequence Length = 56864 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 123 cagagctagctaaaatgagaagccacaa 150 |||||||||||||||| |||| |||||| Sbjct: 28635 cagagctagctaaaatcagaaaccacaa 28662
>emb|AL590086.4| Human DNA sequence from clone RP11-62J23 on chromosome 13, complete sequence Length = 24524 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atgattcaacatactcaaat 31 |||||||||||||||||||| Sbjct: 12697 atgattcaacatactcaaat 12716
>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part of the gene for C-terminal PDZ domain ligand of neuronal nitric oxide synthase (CAPON), complete sequence Length = 208408 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ttctctgccttcaccactgg 409 |||||||||||||||||||| Sbjct: 119416 ttctctgccttcaccactgg 119435
>emb|AL135839.15| Human DNA sequence from clone RP1-188K17 on chromosome 6q22.22-23.3 Contains the part of the SGK gene for serum/glucocorticoid regulated kinase and a CpG island, complete sequence Length = 113673 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ccattgctggttactattac 83 |||||||||||||||||||| Sbjct: 34577 ccattgctggttactattac 34558
>emb|AL122058.19|HSJ813D12 Human DNA sequence from clone RP4-813D12 on chromosome 20 Contains the 5' end of the BMP7 gene for bone morphogenetic protein 7 (osteogenic protein 1), two novel genes and a CpG island, complete sequence Length = 101473 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tggatgatgaaccttggcag 344 |||||||||||||||||||| Sbjct: 34937 tggatgatgaaccttggcag 34918
>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence Length = 485192 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcaaagatggatgatgaacc 337 |||||||||||||||||||| Sbjct: 430451 gcaaagatggatgatgaacc 430470
>gb|AF332547.1| Pseudomonas aeruginosa flagellar hook-associated protein 1 FlgK (flgK), flagellar hook-associated protein type 3 FlgL (flgL), and flagellar glycosyl transferase (fgtA) genes, complete cds; and unknown genes Length = 19758 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ttggccttggcgatggcatc 430 |||||||||||||||||||| Sbjct: 560 ttggccttggcgatggcatc 541
>emb|BX901976.22| Zebrafish DNA sequence from clone DKEY-101P20 in linkage group 22, complete sequence Length = 201928 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aatagtacataaacagagct 129 |||||||||||||||||||| Sbjct: 366 aatagtacataaacagagct 385
>gb|AC068025.12| Homo sapiens chromosome 17, clone RP11-802D6, complete sequence Length = 190194 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 catgaataaagttacacaac 189 |||||||||||||||||||| Sbjct: 99610 catgaataaagttacacaac 99629
>emb|BX908757.10| Zebrafish DNA sequence from clone DKEY-206L1 in linkage group 22, complete sequence Length = 143845 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aatagtacataaacagagct 129 |||||||||||||||||||| Sbjct: 142211 aatagtacataaacagagct 142230
>emb|CR925781.6| Zebrafish DNA sequence from clone DKEY-3B23 in linkage group 10, complete sequence Length = 202134 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gaatgactgagaggattgag 223 |||||||||||||||||||| Sbjct: 17570 gaatgactgagaggattgag 17551
>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22, complete sequence Length = 219929 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aatagtacataaacagagct 129 |||||||||||||||||||| Sbjct: 44647 aatagtacataaacagagct 44666
>gb|AC084382.2| Mus musculus BAC clone RP23-5K17 from 15, complete sequence Length = 164883 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aacatactcaaatatgtgaa 38 |||||||||||||||||||| Sbjct: 21027 aacatactcaaatatgtgaa 21008
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tgtcgagcttctctgccttc 401 |||||||||||||||||||| Sbjct: 127622 tgtcgagcttctctgccttc 127603
>emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, complete sequence Length = 193193 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gagaagccacaatactgacc 158 |||||||||||||||||||| Sbjct: 181122 gagaagccacaatactgacc 181141 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,309,208 Number of Sequences: 3902068 Number of extensions: 4309208 Number of successful extensions: 79724 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79506 Number of HSP's gapped (non-prelim): 190 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)