>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)|
          Length = 183

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 44/48 (91%), Positives = 46/48 (95%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 205
           GPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct: 136 GPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183

>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 41/48 (85%), Positives = 46/48 (95%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 205
           GPKN+REAV+HFG APGVPHSH+KPYVR+KGRKFEKARG+R SRGFKV
Sbjct: 140 GPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187

>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18|
          Length = 187

 Score = 88.6 bits (218), Expect = 3e-18
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+ ARE  RHFGKAPG PHSHTKPY+RSKGRKFE+ARGRR SRG+K
Sbjct: 140 GPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 186

>RL18_RAT (P12001) 60S ribosomal protein L18|
          Length = 187

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 140 GPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

>RL18_MOUSE (P35980) 60S ribosomal protein L18|
          Length = 187

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 140 GPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

>RL18_HUMAN (Q07020) 60S ribosomal protein L18|
          Length = 187

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 140 GPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

>RL18_ORENI (P69091) 60S ribosomal protein L18|
          Length = 187

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+ ARE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K
Sbjct: 140 GPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186

>RL18_OREMO (P69090) 60S ribosomal protein L18|
          Length = 187

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+ ARE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K
Sbjct: 140 GPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186

>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)|
          Length = 187

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 37/47 (78%), Positives = 40/47 (85%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+ ARE  RHFGKAPG PHS TKPYV SKGRKFE+ARGRR SRG+K
Sbjct: 140 GPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGYK 186

>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)|
          Length = 187

 Score = 80.9 bits (198), Expect = 7e-16
 Identities = 36/47 (76%), Positives = 39/47 (82%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 208
           GP+ ARE  RHFGKAP  PHS TKPYV SKGRKFE+ARGRR SRG+K
Sbjct: 140 GPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGYK 186

>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B|
          Length = 187

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 33/48 (68%), Positives = 36/48 (75%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 205
           G K+AREA RHFG  P   H H  PYVRS+GRKFE+ARGRR SR FKV
Sbjct: 143 GKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFERARGRRKSRAFKV 187

>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A|
          Length = 187

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 33/48 (68%), Positives = 36/48 (75%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 205
           G K+AREA RHFG  P   H H  PYVRS+GRKFE+ARGRR SR FKV
Sbjct: 143 GKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFERARGRRKSRAFKV 187

>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)|
          Length = 186

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 30/48 (62%), Positives = 35/48 (72%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 205
           GP+N+REAVRHFG  P   H    P + S GRKFE+ARGRR S+GFKV
Sbjct: 142 GPRNSREAVRHFGMGP---HKGKAPRILSTGRKFERARGRRRSKGFKV 186

>RL18_TRYBB (P50885) 60S ribosomal protein L18|
          Length = 193

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 220
           G K+ RE+V+HFG A GVP SH KP+V S+G++ +++  RR++
Sbjct: 148 GRKSGRESVKHFGAA-GVPGSHAKPHVSSRGKERQRSSKRRHA 189

>RL18_SALSA (P24558) 60S ribosomal protein L18|
          Length = 179

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = -3

Query: 345 PKNAREAVRHFGKAPGVPHSHTKPYVRS 262
           P+NAR+  RHF  AP +P  HTKPYV S
Sbjct: 140 PRNARDVSRHFANAPSIP--HTKPYVLS 165

>MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (Recombinational|
           repair protein mus-23)
          Length = 760

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -3

Query: 324 VRHFGKAPGVPHSHTKPYVRSKGRK------FEKARGRRNSRGFKV*AVEFWAPSCRILL 163
           V +FG+ P   + H KP +  KGR           R  R  R F+   V F+ P+ +   
Sbjct: 166 VNYFGRVPEADNIHVKPILLQKGRTKMALYGLSNVRDERMHRTFRDNKVRFYRPNQQ--- 222

Query: 162 LSVYYHHLFGYQNHTA 115
            + +++ L  +QNH A
Sbjct: 223 KNDWFNLLALHQNHYA 238

>RDRP_TACV (P20430) RNA-directed RNA polymerase (EC 2.7.7.48)|
          Length = 2210

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 164  CYRFIIITFLGTRIIPL*MSVSCVNEFSEPVNWCLVVLQLE 42
            CY F++   L + + PL MS SC+  F     W   VL+LE
Sbjct: 1830 CYNFMVQIILSSMVNPLVMSTSCLKSFF----WFNEVLELE 1866

>JAG2_RAT (P97607) Jagged-2 (Jagged2) (Fragment)|
          Length = 1202

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 FRCQCPVSMSSQNQLIGVWLFCNLRPCLQASYEYH 11
           FRC CP  +S     + V L+C   PCL  +  Y+
Sbjct: 474 FRCHCPRGLSGPLCEVDVDLWCEPNPCLNGARCYN 508

>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor
          Length = 466

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 348 GPKNAREAVRHFGKAPGVPHSHTKP 274
           GPKN  EAV   G  P VP   T+P
Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464

>VG58_BPMD2 (O64249) Gene 58 protein (Gp58)|
          Length = 129

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2

Query: 313 WQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTLVS 173
           W       + ++ +CP  G E        + QG   L+CG+ G ++S
Sbjct: 17  WDPPPDHYEWNKCLCPFHGDETPSAAVSYDLQGFNCLACGVRGDVIS 63

>VG58_BPML5 (Q05271) Gene 58 protein (Gp58)|
          Length = 130

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -2

Query: 313 WQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTLVS 173
           W+      + ++ +CP  G E        + QG   ++CG+ G ++S
Sbjct: 17  WEPPPDHHEWNKCLCPFHGDETPSAAVSYDLQGYNCMACGVRGDVIS 63

>KITH_BHV16 (P24096) Thymidine kinase (EC 2.7.1.21)|
          Length = 357

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = -1

Query: 326 LLGTLAKLQECHTATPSHMSAPRAGNSRRQEEGGTA----GASRFKLWNFGHPRV 174
           L G LA    C  A+     A RAG  RR+  GG      G  R  + NF   RV
Sbjct: 59  LSGILAASARCAAASHGSARARRAGAPRRRGRGGPGCVLPGQVRGPVLNFARARV 113

>JTB_BRUMA (O77049) Protein JTB precursor|
          Length = 146

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 246 RISCPWSGHMAWCGCVALLELCQS 317
           R+  P  GH+ W  C   L+LC++
Sbjct: 7   RLGLPRGGHLCWLLCAFTLKLCEA 30


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,918,328
Number of Sequences: 219361
Number of extensions: 1085969
Number of successful extensions: 3352
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3349
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)