ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 170 2e-42
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 114 1e-25
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 112 5e-25
4DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme... 36 0.060
5DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme... 34 0.23
6DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 33 0.30
7DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme... 33 0.51
8BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 29 7.3
9SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 7.3

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  170 bits (430), Expect = 2e-42
 Identities = 84/93 (90%), Positives = 88/93 (94%), Gaps = 2/93 (2%)
 Frame = -3

Query: 478 ATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVES 299
           ATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  ENVES
Sbjct: 303 ATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVES 360

Query: 298 GHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 206
           GHPLVKEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 361 GHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  114 bits (286), Expect = 1e-25
 Identities = 56/84 (66%), Positives = 67/84 (79%)
 Frame = -3

Query: 475 TWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG 296
           TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ + 
Sbjct: 311 TWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNP 370

Query: 295 HPLVKEGKLANLLAWRAEEDSLEE 224
            P VKEGKL NLL W   ED+LEE
Sbjct: 371 AP-VKEGKLGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score =  112 bits (280), Expect = 5e-25
 Identities = 56/87 (64%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
 Frame = -3

Query: 475 TWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG 296
           TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+GENVES 
Sbjct: 311 TWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESA 368

Query: 295 -HPLVKEGKLANLLAWRAEEDSLEEGA 218
             P+ K+ KLANLL W  E D++EE A
Sbjct: 369 PPPMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -3

Query: 469 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 302
           G  LD + Y C+    Q L   G ++YQ F      A   GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352



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>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 463 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 308
           KLD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -3

Query: 469 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 302
           G  LD + Y C     Q L   G ++YQ F          GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352



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>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -3

Query: 463 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 308
           +LD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
 Frame = +2

Query: 203 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 367
           S A H A        PP    G+  F D+R   L   A +AV  G     P  P G  +L
Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360

Query: 368 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPGG 478
            +     A+ +   PAG  L H  V        LL P G
Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRG 393



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 355 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 215
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,607,213
Number of Sequences: 219361
Number of extensions: 1120045
Number of successful extensions: 3347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3343
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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