ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 609 e-171
2gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 541 e-151
3ref|XM_473046.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
4emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 70 7e-09
5emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de... 70 7e-09
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
7gb|AY966487.1| Oryza sativa (indica cultivar-group) S-adenosylme... 70 7e-09
8gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarbo... 70 7e-09
9dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
10dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
11dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
12dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
13dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
14emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 70 7e-09
15emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 62 2e-06
16emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-gluc... 54 4e-04
17gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence 50 0.007
18gb|BT016840.1| Zea mays clone Contig673 mRNA sequence 50 0.007
19emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca... 50 0.007
20gb|AY103590.1| Zea mays PCO098412 mRNA sequence 50 0.007
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
22dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
23dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g... 46 0.11
24dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
25dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
26dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
27dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
28ref|XM_960781.1| Encephalitozoon cuniculi GB-M1 hypothetical pro... 44 0.42
29emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 44 0.42
30gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9... 44 0.42
31gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33... 44 0.42
32gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 44 0.42
33emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 ... 44 0.42
34gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, compl... 42 1.6
35emb|AL591979.1| Listeria monocytogenes strain EGD, complete geno... 42 1.6
36dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, comp... 42 1.6
37ref|XM_468482.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
38emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 40 6.5
39emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.5
40emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 6.5
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
42gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 6.5
43dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
44emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, ... 40 6.5
45emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6,... 40 6.5 
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score =  609 bits (307), Expect = e-171
 Identities = 437/478 (91%), Gaps = 18/478 (3%)
 Strand = Plus / Minus

                                                                        
Query: 12   tgcttatttataagttgtgacagattttctccaaacagtacgctcattgtggcagacgca 71
            ||||||||||||||||||| ||  | |||||||||||||| |||||||||||||||||||
Sbjct: 1885 tgcttatttataagttgtgccaactcttctccaaacagtatgctcattgtggcagacgca 1826

                                                                        
Query: 72   gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 1766

                                                                        
Query: 132  agtaaccaaaacgacaaacggaa---gtcagaacgaattccacagacggaacagcgacag 188
            |||||||||| ||||  |||  |   ||||||||||||| ||||||||||||||||||||
Sbjct: 1765 agtaaccaaa-cgacgcacgacaacagtcagaacgaattacacagacggaacagcgacag 1707

                                                                        
Query: 189  caaaaatcatcttatcactcgcacagcaccgcgcc------ctcctccagagaatcctcc 242
            ||||  |||||||||||||||||||||| ||||||      |||||| ||||| ||||||
Sbjct: 1706 caaa--tcatcttatcactcgcacagcaacgcgcctgtgccctcctcgagagactcctcc 1649

                                                                        
Query: 243  tccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctc 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 tccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctc 1589

                                                                        
Query: 303  tccacattctcgccctcgaagcagtggaagacggacctgggcgacccggcggagacagca 362
            ||||||||||||      |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1588 tccacattctcg------aagcagtggaagacagacctgggcgacccggcagagacagca 1535

                                                                        
Query: 363  acctcttcattcgcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgc 422
            | |||||| ||||||| |||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 1534 agctcttcgttcgcggcaaagctctggtagatgaggacgccaccgcatggcagctcctgc 1475

                                                                      
Query: 423  tccacgatgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcgg 480
            ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 tccacaacgttgttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcgg 1417
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>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score =  541 bits (273), Expect = e-151
 Identities = 377/406 (92%), Gaps = 8/406 (1%)
 Strand = Plus / Minus

                                                                        
Query: 76   accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 135
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320

                                                                        
Query: 136  accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaaaa 194
            |||||| |||||||| || ||||||||| ||||||||||| |||| ||||||||||||  
Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263

                                                                        
Query: 195  tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctccgcccgccat 254
            |||| |  |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203

                                                                        
Query: 255  gcgagcaggttggcaagcttgccttccttgaccagagggtggccgctctccacattctcg 314
            ||||| |||||||| |||||||||||||||||||||||||||| |   | |||| |||||
Sbjct: 1202 gcgaggaggttggcgagcttgccttccttgaccagagggtggctg---tgcacactctcg 1146

                                                                        
Query: 315  ccctcgaagcagtggaagacggacctgggcgacccggcggagacagcaacctcttcattc 374
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1145 gcctcgaagcagtggaagacggacctgggcgacccggcagagacagcaacctcttcgttc 1086

                                                                        
Query: 375  gcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttg 434
             |||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||
Sbjct: 1085 acggtaaagctctggtagatgaggacgcctccacaggggagctcctgctccacaacgttg 1026

                                                          
Query: 435  ttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcgg 480
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ttgcagtcgtatgcctcggcgtcgagcttcttgccccaggtggcgg 980
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>ref|XM_473046.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1025 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 967
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 381   aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
             ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 13505 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 13447



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 53    gctcattgtggcagacgcagcaaaccacctagagct 88
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 109   aatagcctggccggctgcttcacag 133
             ||||||||||| |||||||||||||
Sbjct: 13782 aatagcctggctggctgcttcacag 13758
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>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
          Length = 2036

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1564 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1506



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1841 aatagcctggctggctgcttcacag 1817
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 381      aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
                ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 24892920 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 24892862



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 53       gctcattgtggcagacgcagcaaaccacctagagct 88
                |||||||||||||||||||||  |||||||||||||
Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 109      aatagcctggccggctgcttcacag 133
                ||||||||||| |||||||||||||
Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
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>gb|AY966487.1| Oryza sativa (indica cultivar-group) S-adenosylmethionine
            decarboxylase mRNA, complete cds
          Length = 1197

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1025 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 967
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>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds
          Length = 1560

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1115 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 1057



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1392 aatagcctggctggctgcttcacag 1368
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>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
            insert sequence
          Length = 2063

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
            insert sequence
          Length = 2059

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
            insert sequence
          Length = 2711

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
            insert sequence
          Length = 2063

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 381  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full
           insert sequence
          Length = 1217

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 381 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
           ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 766 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 708



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  aatagcctggccggctgcttcacag 133
            ||||||||||| |||||||||||||
Sbjct: 1043 aatagcctggctggctgcttcacag 1019
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 381    aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
              ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 154636 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 154578



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 53     gctcattgtggcagacgcagcaaaccacctagagct 88
              |||||||||||||||||||||  |||||||||||||
Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 109    aatagcctggccggctgcttcacag 133
              ||||||||||| |||||||||||||
Sbjct: 154913 aatagcctggctggctgcttcacag 154889
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                        
Query: 381   aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 439
             ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 13533 aagctctggtagatgagga-gccgccacagggcagctcctgctctaccatgttgttgca 13476



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 53    gctcattgtggcagacgcagcaaaccacctagagct 88
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 109   aatagcctggccggctgcttcacag 133
             ||||||||||| |||||||||||||
Sbjct: 13810 aatagcctggctggctgcttcacag 13786
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>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 79/95 (83%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                       
Query: 380 aaagctctggtagatgaggacgcccccgcaggggagctcctgctccacga-tgttgttgc 438
           |||||||||||| ||||| |  || |||||||| |||||||||||||| | |||||| ||
Sbjct: 111 aaagctctggtaaatgagaagaccaccgcagggcagctcctgctccacaactgttgtagc 52

                                              
Query: 439 agtcgtatgcctcggcgtcgagcttcttgccccag 473
           |||| ||  ||||||| || || ||||| ||||||
Sbjct: 51  agtcataaacctcggcatcaagtttcttcccccag 17
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>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence
          Length = 2057

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 414  agctcctgctccacgatgttgttgcagtc 442
            |||||||||||||| ||||||||||||||
Sbjct: 1538 agctcctgctccaccatgttgttgcagtc 1510



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 300  ctctccacattctcgccctcgaagcagtggaa 331
            |||||||| |||||||| || |||||||||||
Sbjct: 1646 ctctccacgttctcgccgtcaaagcagtggaa 1615
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>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
          Length = 1866

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 414 agctcctgctccacgatgttgttgcagtc 442
           |||||||||||||| ||||||||||||||
Sbjct: 540 agctcctgctccaccatgttgttgcagtc 568



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 53  gctcattgtggcagacgcagcaaaccacctagagct 88
           ||||||||||| |||||||||  |||||||||||||
Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 300 ctctccacattctcgccctcgaagcagtggaa 331
           |||||||| |||||||| || |||||||||||
Sbjct: 432 ctctccacgttctcgccgtcaaagcagtggaa 463
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>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
          Length = 1873

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 414  agctcctgctccacgatgttgttgcagtc 442
            |||||||||||||| ||||||||||||||
Sbjct: 1358 agctcctgctccaccatgttgttgcagtc 1330



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 300  ctctccacattctcgccctcgaagcagtggaa 331
            |||||||| |||||||| || |||||||||||
Sbjct: 1466 ctctccacgttctcgccgtcaaagcagtggaa 1435
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>gb|AY103590.1| Zea mays PCO098412 mRNA sequence
          Length = 2400

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 414  agctcctgctccacgatgttgttgcagtc 442
            |||||||||||||| ||||||||||||||
Sbjct: 1607 agctcctgctccaccatgttgttgcagtc 1579



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 53   gctcattgtggcagacgcagcaaaccacctagagct 88
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 300  ctctccacattctcgccctcgaagcagtggaa 331
            |||||||| |||||||| || |||||||||||
Sbjct: 1715 ctctccacgttctcgccgtcaaagcagtggaa 1684
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 61       tggcagacgcagcaaaccacctagagc 87
                ||||||||||||||||||| |||||||
Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 61     tggcagacgcagcaaaccacctagagc 87
              ||||||||||||||||||| |||||||
Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
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>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1  gene for
            S-adenosylmethionine decarboxylase, complete cds
          Length = 2952

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 61   tggcagacgcagcaaaccacctagagc 87
            ||||||||||||||||||| |||||||
Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
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>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
            insert sequence
          Length = 2047

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 61   tggcagacgcagcaaaccacctagagc 87
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
            insert sequence
          Length = 2002

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 61   tggcagacgcagcaaaccacctagagc 87
            ||||||||||||||||||| |||||||
Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
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>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
            insert sequence
          Length = 2546

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 61   tggcagacgcagcaaaccacctagagc 87
            ||||||||||||||||||| |||||||
Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
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>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
            insert sequence
          Length = 2034

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 61   tggcagacgcagcaaaccacctagagc 87
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>ref|XM_960781.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0400)
           partial mRNA
          Length = 1224

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 423 tccacgatgttgttgcagtcgt 444
           ||||||||||||||||||||||
Sbjct: 88  tccacgatgttgttgcagtcgt 67
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>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 209982

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 423   tccacgatgttgttgcagtcgt 444
             ||||||||||||||||||||||
Sbjct: 55310 tccacgatgttgttgcagtcgt 55331
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>gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9) gene, partial cds
          Length = 2389

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 21   ataagttgtgacagattttctc 42
            ||||||||||||||||||||||
Sbjct: 1265 ataagttgtgacagattttctc 1286
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>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 21   ataagttgtgacagattttctc 42
            ||||||||||||||||||||||
Sbjct: 8297 ataagttgtgacagattttctc 8276
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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    ataagttgtgacagattttctc 42
             ||||||||||||||||||||||
Sbjct: 29615 ataagttgtgacagattttctc 29636
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>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4,
             complete sequence
          Length = 100991

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    ttgtgacagattttctccaaac 47
             ||||||||||||||||||||||
Sbjct: 68540 ttgtgacagattttctccaaac 68561
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>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence
          Length = 191540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 274   tgccttccttgaccagagggt 294
             |||||||||||||||||||||
Sbjct: 51033 tgccttccttgaccagagggt 51053
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>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12
          Length = 240050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   tccagagaatcctcctccgcc 248
             |||||||||||||||||||||
Sbjct: 94892 tccagagaatcctcctccgcc 94912
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>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds
          Length = 8881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 228  tccagagaatcctcctccgcc 248
            |||||||||||||||||||||
Sbjct: 4201 tccagagaatcctcctccgcc 4181
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>ref|XM_468482.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  agctcctgctccacgatgtt 433
            ||||||||||||||||||||
Sbjct: 1430 agctcctgctccacgatgtt 1411
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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5'
              end of the SLC24A2 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
              a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 17     atttataagttgtgacagattttctcca 44
              |||| ||||||||||||| |||||||||
Sbjct: 129003 atttttaagttgtgacagtttttctcca 129030
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 447    gcctcggcgtcgagcttcttgccc 470
              ||||||||| ||||||||||||||
Sbjct: 194781 gcctcggcggcgagcttcttgccc 194804
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    ctgggcgacccggcggagac 358
              ||||||||||||||||||||
Sbjct: 276909 ctgggcgacccggcggagac 276890
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 414      agctcctgctccacgatgtt 433
                ||||||||||||||||||||
Sbjct: 35459486 agctcctgctccacgatgtt 35459505
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    gagcaggttggcaagcttgc 276
              ||||||||||||||||||||
Sbjct: 494503 gagcaggttggcaagcttgc 494484
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>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1063_D06
          Length = 102439

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   agctcctgctccacgatgtt 433
             ||||||||||||||||||||
Sbjct: 71007 agctcctgctccacgatgtt 71026
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>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17
          Length = 24990

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tgcttcacagtaaccaaaac 143
             ||||||||||||||||||||
Sbjct: 19045 tgcttcacagtaaccaaaac 19064
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>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence
          Length = 147211

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 17   atttataagttgtgacagattttctcca 44
            |||| ||||||||||||| |||||||||
Sbjct: 2513 atttttaagttgtgacagtttttctcca 2540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,636,441
Number of Sequences: 3902068
Number of extensions: 3636441
Number of successful extensions: 90381
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90170
Number of HSP's gapped (non-prelim): 205
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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