ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27g12 |
|---|---|
| Clone Library Name | barley_pub |
>CLFA_STAAR (Q6GIK4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 1029 Score = 30.4 bits (67), Expect = 1.3 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP P S TN SNK + P + SE+ ++SL+WG Sbjct: 955 SNSDSDSGSNNNVVPPN-SPKSGTN---ASNKNEAKESKEPLPDTGSEDEANTSLIWGLL 1010 Query: 200 HSPGS 214 S GS Sbjct: 1011 ASLGS 1015
>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12| Length = 838 Score = 29.6 bits (65), Expect = 2.1 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Frame = +2 Query: 41 SSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPY--------KNLFSEEG--GHSSLLW 190 +++K +P P +S+ HQD ++ L+ + KN S SSLL+ Sbjct: 433 TTTKLCLPENESPPTSSKHQDPGQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLF 492 Query: 191 GKPHSPGSSWFGS 229 K +SWFGS Sbjct: 493 TKTQGSSTSWFGS 505
>RGYR_THETN (Q8R979) Reverse gyrase [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1117 Score = 29.3 bits (64), Expect = 2.8 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +2 Query: 41 SSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKPHSPGSS 217 S KYI P WE L N T + + +IP + + G +S ++G + G S Sbjct: 441 SVEKYISPETWEKLIQKNFPTTKFDKEKNLIVIPDVYTYIQASGRTSRIFGTSLTKGIS 499
>CLFA_STAAN (Q99VJ4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 989 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 915 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 970 Query: 200 HSPGS 214 S GS Sbjct: 971 ASLGS 975
>CLFA_STAAW (Q8NXJ1) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 946 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 872 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 927 Query: 200 HSPGS 214 S GS Sbjct: 928 ASIGS 932
>CLFA_STAAU (Q53653) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 859 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 914 Query: 200 HSPGS 214 S GS Sbjct: 915 ASIGS 919
>CLFA_STAAC (Q5HHM8) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 859 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 914 Query: 200 HSPGS 214 S GS Sbjct: 915 ASIGS 919
>CLFA_STAAS (Q6GB45) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 928 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 854 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 909 Query: 200 HSPGS 214 S GS Sbjct: 910 ASIGS 914
>CLFA_STAAM (Q932C5) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 935 Score = 28.9 bits (63), Expect = 3.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 861 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 916 Query: 200 HSPGS 214 S GS Sbjct: 917 ASLGS 921
>SUV92_HUMAN (Q9H5I1) Histone-lysine N-methyltransferase, H3 lysine-9 specific 2| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (Suppressor of variegation 3-9 homolog 2) (Su(var)3-9 homolog 2) Length = 410 Score = 28.5 bits (62), Expect = 4.8 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Frame = +2 Query: 5 KPMTISENNS*FSSS--KYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGGHS 178 K +T +NN + +YI+ + ++ QD N+R +I +N EG S Sbjct: 108 KAITPKDNNKTLKPAIAEYIVKKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPS 167 Query: 179 SLLWGKPH--SPGSSWFGSFTWGCAC 250 + + +PG S T+GC+C Sbjct: 168 DFYYINEYKPAPGISLVNEATFGCSC 193
>PRIO_TRIVU (P51780) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 259 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%) Frame = +2 Query: 188 WGKPHSPGSSW---FGSFTWG 241 WG+PH GSSW G WG Sbjct: 78 WGQPHPGGSSWGQPHGGSNWG 98
>PTPRJ_HUMAN (Q12913) Receptor-type tyrosine-protein phosphatase eta precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase eta) (R-PTP-eta) (HPTP eta) (Protein-tyrosine phosphatase receptor type J) (Density-enhanced phosphatase 1) (DEP-1) (CD148 antigen) Length = 1337 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +2 Query: 44 SSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIP---YKNLFSEEGGHSSLLWGKPHS 205 +S+Y+ E +NH T +K + L +IP Y S E H +WG P+S Sbjct: 566 ASEYVYHLVIESKHGSNHTSTYDKAITLQGLIPGTLYNITISPEVDH---VWGDPNS 619
>NO12_MEDTR (P30365) Early nodulin 12 precursor (N-12)| Length = 103 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -1 Query: 252 PHAQPQVNEPNHEDPGECGFPQRREEC--PPSSEN 154 PH +P V++P H+DP PQ+ PP E+ Sbjct: 55 PHKEPPVHKPPHKDPPVNKPPQKESPVHKPPRKES 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,893,554 Number of Sequences: 219361 Number of extensions: 809947 Number of successful extensions: 2262 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2260 length of database: 80,573,946 effective HSP length: 59 effective length of database: 67,631,647 effective search space used: 1623159528 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
