ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 56 3e-08
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 55 8e-08
3EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 53 4e-07
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 41 0.002
5DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) 34 0.14
6GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 34 0.14
7P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor ... 29 4.5
8ILF3_HUMAN (Q12906) Interleukin enhancer-binding factor 3 (Nucle... 29 4.5
9LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III) 29 5.9
10KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17) 28 7.7

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
 Frame = -1

Query: 412 YGFSTNLRACCGAGGGKYNYQNGARCGMSG---------ASACGNPSSSLSWDGIHLTEA 260
           +GF  +L +CCG GG KYNY  G  CGM              C  P  ++ WDG+H T+A
Sbjct: 294 HGFKGSLVSCCGHGG-KYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQA 352

Query: 259 AYKKIAD 239
           A K I D
Sbjct: 353 ANKFIFD 359



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = -1

Query: 442 VFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSSLSWDGIHLTE 263
           +  M+++PA+YGF    + CC  G        GA C  S +  C N SS L WDG+H T+
Sbjct: 459 ISQMLETPAAYGFEETKKPCCKTG----LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQ 514

Query: 262 AAYKKI 245
            AYK I
Sbjct: 515 RAYKTI 520



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
 Frame = -1

Query: 439 FDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGAS---------ACGNPSSSLS 287
           + +   P  +GF   L  CCG GG KYN+   A CG +  +         +C  PS  ++
Sbjct: 287 YSLFSEPEKHGFEFPLITCCGYGG-KYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVN 345

Query: 286 WDGIHLTEAAYKKIADGWVNGPYCHPAI 203
           WDG H TEAA +   D    G +  P +
Sbjct: 346 WDGAHYTEAANEYFFDQISTGAFSDPPV 373



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = -1

Query: 433 MVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSSLSWDGIHLTEAAY 254
           M++SP  YGF    + CC  G  K     G  C         N SS L WDG+H ++ AY
Sbjct: 379 MLESPEDYGFEEIKKPCCKIGLTK----GGVFCKERTLKNMSNASSYLFWDGLHPSQRAY 434

Query: 253 K 251
           +
Sbjct: 435 E 435



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>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 630

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -1

Query: 436 DMVKSPASYG---FSTNLRACCGAGGGKYNYQNGARCGMSG----ASACGNPSSSLSW 284
           D  K   SYG    S+N      +GGG  +  NG   G SG    +S+ GNPS+S SW
Sbjct: 572 DFRKQGGSYGGGASSSNWGGSSSSGGGWGSSNNGGYSGYSGRSNGSSSYGNPSASNSW 629



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 301 SSSLSWDGIHLTEAAYKKIADGW 233
           ++ +SWDG+HL+E  Y KIA+ W
Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133



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>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 381

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 246 IFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPFW*LYLPPPAPQ 383
           + L  + V W+     D   +P   AP  P  AP W L    P+P+
Sbjct: 43  LLLPESVVNWLDEDSDDAPRMPATSAPTAPGPAPSWPLSSSVPSPK 88



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>ILF3_HUMAN (Q12906) Interleukin enhancer-binding factor 3 (Nuclear factor of|
           activated T-cells 90 kDa) (NF-AT-90) (Double-stranded
           RNA-binding protein 76) (DRBP76) (Translational control
           protein 80) (TCP80) (Nuclear factor associated with
           dsRNA) (NFAR) (
          Length = 894

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 415 SYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSS 293
           SY +S +  +  G GG  YNY++      SG  + GN   S
Sbjct: 783 SYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGS 823



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>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)|
          Length = 146

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 212 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 105
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56



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>KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17)|
          Length = 1038

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 231  TQPSAIFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPF 350
            T P     Y  S   + S LS++  LP    P+MP   PF
Sbjct: 973  TDPMKSLTYHNSPPGLNSSLSNNSALPPTQTPEMPQPRPF 1012


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,984,318
Number of Sequences: 219361
Number of extensions: 1041701
Number of successful extensions: 3377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3362
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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