>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -2

Query: 348  TSASATRASGPTVAASSAAPPDLCRACTVSGW-PSPSAVSSHRWPTF*FXXXXXXXSTRL 172
            TS   T   G T  +SSA  P   +  T S W P+P+ +S+               +T L
Sbjct: 4276 TSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLST----------PSIIRTTGL 4325

Query: 171  R---SML*LCCVLANTYVA 124
            R   S + +CCVL +TY A
Sbjct: 4326 RPYPSSVLICCVLNDTYYA 4344

>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 451 QCVGDLDAKACSDCVSAAAAQLKAGCGYATAGEVYLGKCYARF 323
           QC  DLD + C+ C+  A  +L   CG      +Y   C   F
Sbjct: 199 QCTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSF 241



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -1

Query: 457 MSQCVGDLDAKACSDCVSAAAAQLKAGCGYATAGEVYLGKCYARF 323
           M  C GD++   C+ CV  A  ++   C       +Y   C  R+
Sbjct: 81  MFLCTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125

>PERT_BORPE (P14283) Pertactin precursor (P.93) [Contains: Outer membrane|
           protein P.69]
          Length = 910

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 320 PEARVALAEVHFAGGGV--AAPGLELRGRGGDAVGARLGVEV 439
           P+A +A   V  AGGG   AA GL +R  GG +V  RLG+EV
Sbjct: 784 PQAELA---VFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEV 822

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +3

Query: 264  PCMRGTNPAAPLTKPPPLDQKRA*HLPRYTSPAVA*PHPALSCAAAAETQSEHALASRSP 443
            P ++   P  P   PP   Q +A   P  TSPA A PH +L   A     S+ AL S+ P
Sbjct: 861  PLLQHPGPPQPFGLPPQASQGQA---PLGTSPAAAYPHTSLQLPA-----SQSALQSQQP 912

>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane|
           protein P.68]
          Length = 916

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 320 PEARVALAEVHFAGGGV--AAPGLELRGRGGDAVGARLGVEV 439
           P+A +A+  V   GGG   AA GL +R  GG +V  RLG+EV
Sbjct: 790 PQAELAVFRV---GGGAYRAANGLRVRDEGGSSVLGRLGLEV 828

>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane|
           protein P.70]
          Length = 922

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query: 320 PEARVALAEVHFAGGGV--AAPGLELRGRGGDAVGARLGVEV 439
           P+A +A+  V   GGG   AA GL +R  GG +V  RLG+EV
Sbjct: 796 PQAELAVFRV---GGGAYRAANGLRVRDEGGSSVLGRLGLEV 834

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 457 MSQCVGDLDAKACSDCVSAAAAQLKAGCGYATAGEVYLGKCYARF 323
           M  C+GD++   C+ CV  A  ++   C       +Y   C  R+
Sbjct: 82  MFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRY 126



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 451 QCVGDLDAKACSDCVSAAAAQLKAGCGYATAGEVYLGKCYARF 323
           QC   LD K C+ C+  A  +L   CG      ++  KC   F
Sbjct: 200 QCSPHLDPKNCTTCLKLALQELTQCCGDQLWAFIFTPKCLVSF 242

>COBQ_BURPS (Q63WA1) Cobyric acid synthase|
          Length = 486

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 317 GPEARVALAEVHFA---GGGVAAPGLELRGRGGDAVGARLGVE 436
           G +ARVA  E+H     G  +A+P L L GRGG+     L  +
Sbjct: 380 GGDARVAGYEIHMGRTEGPALASPALMLAGRGGERPDGALSAD 422

>PRGR_HUMAN (P06401) Progesterone receptor (PR)|
          Length = 933

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 243 TARASRSPCMRGTNPAA----PLTKPPPLDQKRA*HLPRYTSPAVA*PHPALSCAAAAET 410
           +AR+ RS  + G NPAA    PL  PPPL        PR T      P  A   AA A  
Sbjct: 397 SARSPRSYLVAGANPAAFPDFPLGPPPPLP-------PRATPSR---PGEAAVTAAPASA 446

Query: 411 QSEHALASRSPTHC 452
               A +S S   C
Sbjct: 447 SVSSASSSGSTLEC 460

>COBQ_BURMA (Q62LF1) Cobyric acid synthase|
          Length = 486

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 317 GPEARVALAEVHFA---GGGVAAPGLELRGRGGD 409
           G +ARVA  E+H     G  +A+P L L GRGG+
Sbjct: 380 GGDARVAGYEIHMGRTEGPALASPALMLAGRGGE 413

>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 457 MSQCVGDLDAKACSDCVSAAAAQLKAGCGYATAGEVYLGKCYARF 323
           M  C GD++   C++CV  A  ++   C       +Y   C  R+
Sbjct: 85  MFLCTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129

>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1243

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/62 (37%), Positives = 27/62 (43%)
 Frame = +2

Query: 221  QRCEETADGEGQPLTVHARHKSGGAADEAATVGPEARVALAEVHFAGGGVAAPGLELRGR 400
            Q    T  G  +P T     +S    D A   GPE R ALAE   A  G+ A G+E  G 
Sbjct: 1032 QPTSPTLSGSPKPSTPQLTSESSDTEDSAGG-GPETREALAESDRAAEGLGA-GVEEEGD 1089

Query: 401  GG 406
             G
Sbjct: 1090 DG 1091

>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated|
            transcription factor 1) (DATF-1) (hDido1)
          Length = 2240

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = +3

Query: 231  KKPPTARASRSPCMRGTNPAAPLTKPPPLDQKRA*HLPRYTSPAVA*PHPALSCAAAAET 410
            KKP       +     T P      PPPL +     +     PA   P  A + AAAA T
Sbjct: 1239 KKPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLKVLSSLKPAAPSPATAATTAAAAST 1298

Query: 411  QSEHALASRSPT 446
             +    +S S T
Sbjct: 1299 AASSTASSASKT 1310

>IF2_PELCD (Q3A4A7) Translation initiation factor IF-2|
          Length = 947

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 221 QRCEETADGEGQPLTVHARHKSGGAADEAATVGPEARVALAEVHFAGGGVAAPGLELRG 397
           +R E   +G+G+P        SGG A  A    P+A V      F GG   AP  E+RG
Sbjct: 246 KRQERAKNGKGRPERPKGAKPSGGPAPRAKEAAPQAAVP-----FDGG--PAPDKEVRG 297

>THAP7_HUMAN (Q9BT49) THAP domain-containing protein 7|
          Length = 309

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 156 AITLISTSYCNRS*TSRTKK*ANDAKKPPTARASR--SPCMRGTNPAAPLTKPPPLD 320
           A+  I  S+     T++TK  +     P  +R  R    C  G  P  P + PPP D
Sbjct: 88  AVPTIFESFSKLRRTTKTKGHSYPPGPPEVSRLRRCRKRCSEGRGPTTPFSPPPPAD 144

>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 25/85 (29%), Positives = 35/85 (41%)
 Frame = +3

Query: 201  SRTKK*ANDAKKPPTARASRSPCMRGTNPAAPLTKPPPLDQKRA*HLPRYTSPAVA*PHP 380
            +R ++ ++ +  PP  RA RS   +         +PPP  + R   L R  SP      P
Sbjct: 790  ARGRRYSSQSLSPPRRRAERSVSPQ---------RPPPGRRPRGDSLSRSPSPP-----P 835

Query: 381  ALSCAAAAETQSEHALASRSPTHCD 455
              +        S  A ASRSP H D
Sbjct: 836  RYAREQRRRRNSSSASASRSPPHRD 860

>RRP3_CRYNE (Q5KBE2) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 484

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 348 TSASATRASGPTVAASSAAPPDLCRACTVSGWPSPSAVSSHRWP 217
           ++  A  AS     A     P+LCRAC   G+  PS + +   P
Sbjct: 27  SNPDAPEASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIP 70

>YK82_YEAST (P36170) Hypothetical protein YKR102W precursor|
          Length = 1169

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 354 KCTSASATRASGPTVAASSAAPPDLCRACT 265
           +CT   +T  S P V +SS++  ++C  CT
Sbjct: 466 ECTETESTSTSTPYVTSSSSSSSEVCTECT 495



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 354 KCTSASATRASGPTVAASSAAPPDLCRACT 265
           +CT   +T  S P V +SS++  ++C  CT
Sbjct: 340 ECTETESTSTSTPYVTSSSSSSSEVCTECT 369

>MEDEA_ARATH (O65312) Polycomb group protein MEDEA (Maternal embryogenesis|
           control protein) (Protein FERTILIZATION-INDEPENDENT
           SEED1) (Protein SET DOMAIN GROUP 5)
          Length = 689

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 351 CTSASATRASGPTVAASSAAPPDLCRACTVS 259
           C     T    P  AA+    PDLCR+C +S
Sbjct: 488 CAIGQCTNRQCPCFAANRECDPDLCRSCPLS 518

>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +3

Query: 219 ANDAKKPPTARASRSPCMRGTNPAAPLTKPPPLDQKRA*HLPRYTSPAVA*PHPALSCAA 398
           ++ A+ PP A  +R+   R    A+P   PP     R    P   SPA A P P  S A 
Sbjct: 9   SSPARTPPQASPARTSPARAPPQASPARTPPQASPART---PPQASPARA-PPPQASPAR 64

Query: 399 AAETQSEHALAS 434
           A+  ++  + +S
Sbjct: 65  ASPARAPPSRSS 76

>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = -2

Query: 345 SASATRASGPTVAASSAAPPDLCRACTVSGWPSPSAVSS 229
           S S  R+SGP  A SS   P   R  T  G P P A  S
Sbjct: 534 SPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAPPS 572

>MUCSM_CANFA (P83762) Submaxillary mucin (CSM) (Fragment)|
          Length = 89

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/62 (32%), Positives = 23/62 (37%)
 Frame = +2

Query: 239 ADGEGQPLTVHARHKSGGAADEAATVGPEARVALAEVHFAGGGVAAPGLELRGRGGDAVG 418
           A G G P         GG+    A  G E+          GG   APG  L GR G  +G
Sbjct: 20  AGGTGSPTASARGGTPGGSEGFTAAPGSES---------TGGHSGAPGTTLAGRAGTTLG 70

Query: 419 AR 424
            R
Sbjct: 71  PR 72

>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = +3

Query: 201 SRTKK*ANDAKKP--PTARASRSPCMRGTNPAAPLTKPPPLDQKRA*HLPRYTSPAVA*P 374
           S TK    + K P  P   +S  P      P  P T PPP         P+  + A A P
Sbjct: 293 SSTKIQTENHKSPSQPPLPSSAPPIPTSHAPPLPPTAPPPPSLPNVTSAPKKATSAPAPP 352

Query: 375 HPALSCA-AAAETQSEHA 425
            P L  A ++A T S  A
Sbjct: 353 PPPLPAAMSSASTNSVKA 370

>KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag (Ether-a-go-go|
           protein)
          Length = 1174

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 230 EETADGEGQPLTVHARHKSGGAADEAATVGPEARVALAEVHFAGGGVA-APG 382
           +E  + +  P +  +R    GAA  +ATVGP   VA      AG GV+  PG
Sbjct: 789 DEGGEVDSSPPSRDSRVVIEGAAVSSATVGPSPPVATTSSAAAGAGVSGGPG 840

>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043|
          Length = 1691

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 342  PRYTSPAVA*PHPALSCAAAAETQSEHA 425
            PR TSPA + P PALS ++A   +S  A
Sbjct: 1533 PRNTSPACSAPSPALSYSSAGSARSSPA 1560

>Y4RJ_RHISN (P55643) Putative transposase y4rJ|
          Length = 396

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
 Frame = +2

Query: 224 RCEETADGEGQPLTVHARHKSGGAAD---------EAATVGPEARVALAEV---HFAGGG 367
           R EE   G+G+PL  H + + G   D         +A  V  +A +A A V   HFA   
Sbjct: 201 RLEELRTGDGRPLPTHLKAQVGRELDRLELLIGQIKAVEVERDAMLAAAPVGSAHFADCE 260

Query: 368 VAAPGLELRGRG 403
             AP + L  +G
Sbjct: 261 QPAPAMLLALKG 272

>PRAX_HUMAN (Q9BXM0) Periaxin|
          Length = 1461

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = +2

Query: 212  KVGQRCEETADGEGQPLTVHARHKSGGAADEAATVGPEARVALAEVHFAGGGVAAPGLEL 391
            +VG    E   GEG P       +     +E +  G   R     V     G+AAP    
Sbjct: 1335 RVGFSQSEMVTGEGSPSPEEEEEEE----EEGSGEGASGRRGRVRVRLPRVGLAAPSKAS 1390

Query: 392  RGRGGDA 412
            RG+ GDA
Sbjct: 1391 RGQEGDA 1397

>H110_CHICK (P08286) Histone H1.10 (Methylated DNA-binding protein 2-H1)|
           (MDBP-2-H1)
          Length = 219

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 210 KK*ANDAKKPPTARASRSPCMRGTNPAAPLTKPPPLDQKRA 332
           KK A+ AKKP  A A++    +   PAA  TK      K+A
Sbjct: 134 KKPASAAKKPKKAAAAKKSPKKAKKPAAAATKKAAKSPKKA 174

>FTZF1_BOMMO (P49867) Nuclear hormone receptor FTZ-F1 (BmFTZ-F1)|
          Length = 534

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 252 ASRSPCMRGTNPAAPLTKPPPLDQKRA*HLPRYTSP 359
           +S  P + G  P  P   PPP   K   H P   SP
Sbjct: 236 SSPGPALLGAQPQPPQPPPPPTHDKWEAHSPHSASP 271


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,142,930
Number of Sequences: 219361
Number of extensions: 1019459
Number of successful extensions: 3897
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3879
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)