ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467659.1| Oryza sativa (japonica cultivar-group), mRNA 202 7e-49
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 202 7e-49
3dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 202 7e-49
4dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... 202 7e-49
5dbj|AK109142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 7e-49
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
7dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
8dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
9emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis ge... 44 0.39
10ref|NM_105260.2| Arabidopsis thaliana catalytic AT1G65880 mRNA, ... 42 1.6
11emb|BX571771.5| Zebrafish DNA sequence from clone CH211-160F8 in... 42 1.6
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
13emb|BX640583.7| Zebrafish DNA sequence from clone CH211-186C22 i... 42 1.6
14dbj|AK069786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
15gb|AC009513.2|F12P19 Sequence of BAC F12P19 from Arabidopsis tha... 42 1.6
16gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.6
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
18emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 42 1.6
19emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 42 1.6
20gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complet... 42 1.6
21gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 6.2
22ref|XM_540758.2| PREDICTED: Canis familiaris similar to glycosyl... 40 6.2
23emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 40 6.2
24dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DN... 40 6.2
25gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.2
26dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2 
>ref|XM_467659.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score =  202 bits (102), Expect = 7e-49
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                       
Query: 320 ccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccgcaccc 379
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 769 ccagaagcgcgcgtagcacttgccgaggtacacctcgccggccgtggcgtagccgcagcc 710

                                                                       
Query: 380 ggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcgaggtc 439
           ||||||||||||  |||| ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 709 ggccttgagctggccggcggcggccgagacgcagtcggagcaggccttggcgccgaggtc 650

                             
Query: 440 ccccacgcactgcgacat 457
           ||||||||||||||||||
Sbjct: 649 ccccacgcactgcgacat 632
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  202 bits (102), Expect = 7e-49
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                            
Query: 320      ccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccgcaccc 379
                ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 30674547 ccagaagcgcgcgtagcacttgccgaggtacacctcgccggccgtggcgtagccgcagcc 30674488

                                                                            
Query: 380      ggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcgaggtc 439
                ||||||||||||  |||| ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 30674487 ggccttgagctggccggcggcggccgagacgcagtcggagcaggccttggcgccgaggtc 30674428

                                  
Query: 440      ccccacgcactgcgacat 457
                ||||||||||||||||||
Sbjct: 30674427 ccccacgcactgcgacat 30674410
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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score =  202 bits (102), Expect = 7e-49
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                         
Query: 320   ccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccgcaccc 379
             ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 14694 ccagaagcgcgcgtagcacttgccgaggtacacctcgccggccgtggcgtagccgcagcc 14635

                                                                         
Query: 380   ggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcgaggtc 439
             ||||||||||||  |||| ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 14634 ggccttgagctggccggcggcggccgagacgcagtcggagcaggccttggcgccgaggtc 14575

                               
Query: 440   ccccacgcactgcgacat 457
             ||||||||||||||||||
Sbjct: 14574 ccccacgcactgcgacat 14557
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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0643A10
          Length = 187931

 Score =  202 bits (102), Expect = 7e-49
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                          
Query: 320    ccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccgcaccc 379
              ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 186555 ccagaagcgcgcgtagcacttgccgaggtacacctcgccggccgtggcgtagccgcagcc 186496

                                                                          
Query: 380    ggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcgaggtc 439
              ||||||||||||  |||| ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 186495 ggccttgagctggccggcggcggccgagacgcagtcggagcaggccttggcgccgaggtc 186436

                                
Query: 440    ccccacgcactgcgacat 457
              ||||||||||||||||||
Sbjct: 186435 ccccacgcactgcgacat 186418
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>dbj|AK109142.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E10, full
           insert sequence
          Length = 1083

 Score =  202 bits (102), Expect = 7e-49
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                       
Query: 320 ccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccgcaccc 379
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 769 ccagaagcgcgcgtagcacttgccgaggtacacctcgccggccgtggcgtagccgcagcc 710

                                                                       
Query: 380 ggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcgaggtc 439
           ||||||||||||  |||| ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 709 ggccttgagctggccggcggcggccgagacgcagtcggagcaggccttggcgccgaggtc 650

                             
Query: 440 ccccacgcactgcgacat 457
           ||||||||||||||||||
Sbjct: 649 ccccacgcactgcgacat 632
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  188 bits (95), Expect = 1e-44
 Identities = 131/143 (91%)
 Strand = Plus / Plus

                                                                           
Query: 315     ttggaccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccg 374
               |||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct: 7977775 ttggaccagaagcgcgcgtagcacttgccgaggtacacctcgccggcagaggcgtacccg 7977834

                                                                           
Query: 375     cacccggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcg 434
               || ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||| ||
Sbjct: 7977835 cagccggccttgagctgcgacgacgcggcggagacgcagtcggtgcaggccttggcgccg 7977894

                                      
Query: 435     aggtcccccacgcactgcgacat 457
               ||||| |||||||||||||||||
Sbjct: 7977895 aggtcgcccacgcactgcgacat 7977917



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 349      acacttcgccggcggtggcg 368
                ||||||||||||||||||||
Sbjct: 28273126 acacttcgccggcggtggcg 28273107
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score =  188 bits (95), Expect = 1e-44
 Identities = 131/143 (91%)
 Strand = Plus / Plus

                                                                         
Query: 315   ttggaccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccg 374
             |||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct: 85293 ttggaccagaagcgcgcgtagcacttgccgaggtacacctcgccggcagaggcgtacccg 85352

                                                                         
Query: 375   cacccggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcg 434
             || ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||| ||
Sbjct: 85353 cagccggccttgagctgcgacgacgcggcggagacgcagtcggtgcaggccttggcgccg 85412

                                    
Query: 435   aggtcccccacgcactgcgacat 457
             ||||| |||||||||||||||||
Sbjct: 85413 aggtcgcccacgcactgcgacat 85435
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>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0592E11
          Length = 153734

 Score =  188 bits (95), Expect = 1e-44
 Identities = 131/143 (91%)
 Strand = Plus / Plus

                                                                        
Query: 315  ttggaccagaagcgcgcgtagcacttgccgaggtacacttcgccggcggtggcgtagccg 374
            |||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct: 1544 ttggaccagaagcgcgcgtagcacttgccgaggtacacctcgccggcagaggcgtacccg 1603

                                                                        
Query: 375  cacccggccttgagctgcgcggccgcggcggagacgcagtcggagcacgccttggcgtcg 434
            || ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||| ||
Sbjct: 1604 cagccggccttgagctgcgacgacgcggcggagacgcagtcggtgcaggccttggcgccg 1663

                                   
Query: 435  aggtcccccacgcactgcgacat 457
            ||||| |||||||||||||||||
Sbjct: 1664 aggtcgcccacgcactgcgacat 1686
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>emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis gene cluster
          Length = 40579

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 239   gccgacggcgagggccagccgc 260
             ||||||||||||||||||||||
Sbjct: 14308 gccgacggcgagggccagccgc 14287
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>ref|NM_105260.2| Arabidopsis thaliana catalytic AT1G65880 mRNA, complete cds
          Length = 1748

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 154  tagctataacattgatctcaacctc 178
            |||||||||||||||||||| ||||
Sbjct: 1704 tagctataacattgatctcatcctc 1680
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>emb|BX571771.5| Zebrafish DNA sequence from clone CH211-160F8 in linkage group 21,
             complete sequence
          Length = 162245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tttataattacacactttgaa 36
             |||||||||||||||||||||
Sbjct: 17433 tttataattacacactttgaa 17413
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 426      ttggcgtcgaggtcccccacg 446
                |||||||||||||||||||||
Sbjct: 19192244 ttggcgtcgaggtcccccacg 19192224
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>emb|BX640583.7| Zebrafish DNA sequence from clone CH211-186C22 in linkage group 21,
              complete sequence
          Length = 130141

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tttataattacacactttgaa 36
              |||||||||||||||||||||
Sbjct: 116196 tttataattacacactttgaa 116216
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>dbj|AK069786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030L13, full
           insert sequence
          Length = 1362

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 426 ttggcgtcgaggtcccccacg 446
           |||||||||||||||||||||
Sbjct: 190 ttggcgtcgaggtcccccacg 170
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>gb|AC009513.2|F12P19 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81490

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 154   tagctataacattgatctcaacctc 178
             |||||||||||||||||||| ||||
Sbjct: 14038 tagctataacattgatctcatcctc 14062
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 229    cgaagaaaccgccgacggcgagggc 253
              |||||||||||||||||||| ||||
Sbjct: 586495 cgaagaaaccgccgacggcgcgggc 586471
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 426      ttggcgtcgaggtcccccacg 446
                |||||||||||||||||||||
Sbjct: 19118471 ttggcgtcgaggtcccccacg 19118451
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>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127026

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 426   ttggcgtcgaggtcccccacg 446
             |||||||||||||||||||||
Sbjct: 33737 ttggcgtcgaggtcccccacg 33757
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>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   ttggcgtcgaggtcccccacg 446
             |||||||||||||||||||||
Sbjct: 25574 ttggcgtcgaggtcccccacg 25554
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>gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complete sequence
          Length = 188083

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     atgatattttgctacaaaaga 93
              |||||||||||||||||||||
Sbjct: 163367 atgatattttgctacaaaaga 163387
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      acaaaagagcaaggctgcac 105
               ||||||||||||||||||||
Sbjct: 1458441 acaaaagagcaaggctgcac 1458460
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>ref|XM_540758.2| PREDICTED: Canis familiaris similar to glycosyltransferase-like 1B
           (LOC483638), mRNA
          Length = 2320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 393 gcggccgcggcggagacgcagtcggagc 420
           ||||||||||||| ||||||||||||||
Sbjct: 277 gcggccgcggcgg-gacgcagtcggagc 251
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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   ttggaccagaagcgcgcgta 334
             ||||||||||||||||||||
Sbjct: 52469 ttggaccagaagcgcgcgta 52488
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>dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DNA, complete genome
          Length = 132959

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   cacaaatccggcggcgccgc 297
             ||||||||||||||||||||
Sbjct: 14681 cacaaatccggcggcgccgc 14700
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    ctgcgcggccgcggcggaga 408
              ||||||||||||||||||||
Sbjct: 895891 ctgcgcggccgcggcggaga 895910
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   acacttcgccggcggtggcg 368
             ||||||||||||||||||||
Sbjct: 71155 acacttcgccggcggtggcg 71136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,144,673
Number of Sequences: 3902068
Number of extensions: 3144673
Number of successful extensions: 64835
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64338
Number of HSP's gapped (non-prelim): 498
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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