ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017380.1| Zea mays clone EL01N0326D06.c mRNA sequence 133 5e-28
2gb|AY106262.1| Zea mays PCO111648 mRNA sequence 133 5e-28
3emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransgly... 96 1e-16
4ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group... 90 6e-15
5ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
7dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mR... 90 6e-15
8dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
9dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
10dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
11gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase ... 88 2e-14
12gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase ... 86 1e-13
13gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase ... 86 1e-13
14emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein 78 2e-11
15gb|AY589588.1| Triticum aestivum endotransglucosylase/hydrolase ... 76 9e-11
16emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransgl... 70 6e-09
17emb|AJ875021.1| Zea mays mRNA for xyloglucan endo-transglycosyla... 68 2e-08
18ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
19emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
21dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
22gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 48 0.021
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
24dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
25dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
26gb|BT017812.1| Zea mays clone EL01N0507B07.c mRNA sequence 42 1.3
27emb|CT009637.4| Mouse DNA sequence from clone RP23-131G16 on chr... 42 1.3
28emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 i... 42 1.3
29gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, comp... 42 1.3
30gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.3
31gb|U72662.2|MEU72662 Methylobacterium extorquens methylotrophy r... 42 1.3
32dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.3
33gb|AY105107.1| Zea mays PCO140468 mRNA sequence 42 1.3
34gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.1
35gb|AY210803.1| Aphonopelma hentzi 5.8S ribosomal RNA gene, compl... 40 5.1
36emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 5.1
37gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 40 5.1
38dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
39emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on ch... 40 5.1
40emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.1
41dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1 
>gb|BT017380.1| Zea mays clone EL01N0326D06.c mRNA sequence
          Length = 781

 Score =  133 bits (67), Expect = 5e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                       
Query: 182 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||||||||||||||||||| ||||  ||||| |||||||||||| ||||||||| ||||
Sbjct: 505 cgggagcactcggcggggaagccctgcgggaatcgccagccgtcgtcgcagtagttgtag 446

                                                                       
Query: 242 tgcatgtagttcctcctggcccagtcgagggtgccgcgctcggcggcgctgggccggcgc 301
           ||||||||||||  |||||||||| ||| |||||| | ||||||||||  | || |||| 
Sbjct: 445 tgcatgtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcgg 386

                              
Query: 302 gtcatccagcggtcggtgc 320
            ||||||||||||||||||
Sbjct: 385 ctcatccagcggtcggtgc 367
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>gb|AY106262.1| Zea mays PCO111648 mRNA sequence
          Length = 1257

 Score =  133 bits (67), Expect = 5e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                       
Query: 182 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||||||||||||||||||| ||||  ||||| |||||||||||| ||||||||| ||||
Sbjct: 983 cgggagcactcggcggggaagccctgcgggaagcgccagccgtcgtcgcagtagttgtag 924

                                                                       
Query: 242 tgcatgtagttcctcctggcccagtcgagggtgccgcgctcggcggcgctgggccggcgc 301
           ||||||||||||  |||||||||| ||| |||||| | ||||||||||  | || |||| 
Sbjct: 923 tgcatgtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcgg 864

                              
Query: 302 gtcatccagcggtcggtgc 320
            ||||||||||||||||||
Sbjct: 863 ctcatccagcggtcggtgc 845
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>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (PM5)
          Length = 1188

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 182 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||
Sbjct: 906 cgggagcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtag 847

                                               
Query: 242 tgcatgtagttcctcctggcccagtcgagggtgccg 277
             |||||| || |||  ||||||| ||| |||||||
Sbjct: 846 gacatgtacttgctctcggcccaggcgacggtgccg 811
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>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA
          Length = 1127

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 186 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
           |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 905 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 846

                                                    
Query: 246 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
           ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 845 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 805
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>ref|XM_480868.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1111

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 186 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
           |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 910 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 851

                                                    
Query: 246 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
           ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 850 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 810
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                           
Query: 186     agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
               |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 8322676 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 8322617

                                                        
Query: 246     tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
               ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 8322616 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 8322576
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>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan
           endotransglycosylase-related protein 5, complete cds
          Length = 1280

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 186 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
           |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 901 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 842

                                                    
Query: 246 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
           ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 841 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 801
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>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0682A06
          Length = 142023

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 186   agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
             |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 62785 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 62726

                                                      
Query: 246   tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
             ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 62725 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 62685
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>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full
           insert sequence
          Length = 1111

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 186 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
           |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 910 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 851

                                                    
Query: 246 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
           ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 850 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 810
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>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full
           insert sequence
          Length = 1127

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 186 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 245
           |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||  ||
Sbjct: 905 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 846

                                                    
Query: 246 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 286
           ||||||| | |  ||||||  ||| ||||||| ||||||||
Sbjct: 845 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 805
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>gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase XTH3 mRNA,
           complete cds
          Length = 938

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                       
Query: 182 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||| ||||||||||||||| || |||||||| ||||||||||||| |||||||||||||
Sbjct: 894 cgggtgcactcggcggggaatccgttggggaagcgccagccgtcggtgcagtagtcgtag 835

                                               
Query: 242 tgcatgtagttcctcctggcccagtcgagggtgccg 277
             |||||| || |||  ||||||| ||| |||||||
Sbjct: 834 gacatgtacttgctctcggcccaggcgacggtgccg 799
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>gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase XTH2 mRNA,
           complete cds
          Length = 1107

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 187 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgcat 246
           ||||||||||||||| || |||||||| ||||||||||||| |||||||||||||  |||
Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831

                                          
Query: 247 gtagttcctcctggcccagtcgagggtgccg 277
           ||| || |||  ||||||| ||| |||||||
Sbjct: 830 gtacttgctctcggcccaggcgacggtgccg 800
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>gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase XTH1 mRNA,
           complete cds
          Length = 958

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 187 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgcat 246
           ||||||||||||||| || |||||||| ||||||||||||| |||||||||||||  |||
Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831

                                          
Query: 247 gtagttcctcctggcccagtcgagggtgccg 277
           ||| || |||  ||||||| ||| |||||||
Sbjct: 830 gtacttgctctcggcccaggcgacggtgccg 800
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>emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein
          Length = 1189

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                          
Query: 195 cggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           ||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 886 cggggaatcccttggggaaccgccagccgtcggcgcagtagttgtag 840
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>gb|AY589588.1| Triticum aestivum endotransglucosylase/hydrolase XTH4 mRNA,
           complete cds
          Length = 1100

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 188 cactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct: 891 cactcgccggggaatcccttggggaacctccagccgtcggcgcagtagttgtag 838
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>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
          Length = 1110

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 187 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           ||||||| ||||||| ||||||||||| ||||| |||||||||||||||| ||||
Sbjct: 883 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtag 829
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>emb|AJ875021.1| Zea mays mRNA for xyloglucan endo-transglycosylase/hydrolase (xth1
           gene), cultivated variety W64A
          Length = 1225

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                             
Query: 203 cccttggggaaccgccagccgtcggcgcagtagtcgtagtgcatgtagtt 252
           |||| ||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct: 911 ccctgggggaaccgccagccgtcgtcgcagtagttgtagcgcatgtagtt 862
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>ref|XM_473788.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 822

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 184 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 240
           |||||||||||  ||||| ||||  |||||||||  || ||||||||||||||||||
Sbjct: 813 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 757
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>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
              complete sequence
          Length = 166804

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 184    ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 240
              |||||||||||  ||||| ||||  |||||||||  || ||||||||||||||||||
Sbjct: 149764 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 149820
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 184      ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 240
                |||||||||||  ||||| ||||  |||||||||  || ||||||||||||||||||
Sbjct: 30516387 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 30516443
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>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full
           insert sequence
          Length = 1109

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 184 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 240
           |||||||||||  ||||| ||||  |||||||||  || ||||||||||||||||||
Sbjct: 903 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 847
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 265     gtcgagggtgccgcgctcggcggcgctg 292
               ||||| ||||||||||||||||||||||
Sbjct: 1784991 gtcgatggtgccgcgctcggcggcgctg 1784964
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 223      gtcggcgcagtagtcgtagtgcatgtagttc 253
                |||||||||||||||||||  ||||||||||
Sbjct: 28755537 gtcggcgcagtagtcgtaggccatgtagttc 28755507



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 222      cgtcggcgcagtagtcgtag 241
                ||||||||||||||||||||
Sbjct: 13233015 cgtcggcgcagtagtcgtag 13232996
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 223   gtcggcgcagtagtcgtagtgcatgtagttc 253
             |||||||||||||||||||  ||||||||||
Sbjct: 63312 gtcggcgcagtagtcgtaggccatgtagttc 63282
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 223    gtcggcgcagtagtcgtagtgcatgtagttc 253
              |||||||||||||||||||  ||||||||||
Sbjct: 156103 gtcggcgcagtagtcgtaggccatgtagttc 156073
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>gb|BT017812.1| Zea mays clone EL01N0507B07.c mRNA sequence
          Length = 1156

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                       
Query: 182 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||| ||||||  ||||||||||||  ||||| ||||| |||||  ||||||||| ||| 
Sbjct: 806 cgggcgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgtac 747

                        
Query: 242 tgcatgtagttcc 254
           |||| | ||||||
Sbjct: 746 tgcaagcagttcc 734
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>emb|CT009637.4| Mouse DNA sequence from clone RP23-131G16 on chromosome 17, complete
              sequence
          Length = 222316

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    ggatggatcaatggatggctg 127
              |||||||||||||||||||||
Sbjct: 198135 ggatggatcaatggatggctg 198155
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>emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 in linkage group 15,
              complete sequence
          Length = 175972

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     tcattcacctttatttactat 31
              |||||||||||||||||||||
Sbjct: 104519 tcattcacctttatttactat 104539
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>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence
          Length = 206801

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   ggatggatcaatggatggctg 127
             |||||||||||||||||||||
Sbjct: 44345 ggatggatcaatggatggctg 44325
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 284     gcggcgctgggccggcgcgtc 304
               |||||||||||||||||||||
Sbjct: 3925726 gcggcgctgggccggcgcgtc 3925746
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>gb|U72662.2|MEU72662 Methylobacterium extorquens methylotrophy region containing
            methylotrophic phosphoenolpyruvate carboxylase (ppcA),
            malyl-CoA lyase (mclA), orf1, orf2, putative ABC
            transporter subunit A (abcA), putative ABC transporter
            subunit B (abcB), putative ABC transporter ATP-binding
            subunit (abcC), methanol dehydrogenase large subunit
            homolog (mxaF'), cytochrome c (maxG'), mxaJ homolog
            (mxaJ'), 6-hydroxymethyl-7,8-dihydropterin
            pyrophosphokinase (folA), dihydroneopterin aldolase
            (folB), dihydroxypteroate synthase (folC), orf3, orf4,
            and PqqE (pqqE) genes, complete cds; and PqqC/D (pqqC/D)
            gene, partial cds
          Length = 17877

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 276  cgcgctcggcggcgctgggccggcg 300
            |||||||||||||| ||||||||||
Sbjct: 7236 cgcgctcggcggcgatgggccggcg 7212
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 266     tcgagggtgccgcgctcggcg 286
               |||||||||||||||||||||
Sbjct: 1994160 tcgagggtgccgcgctcggcg 1994140
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>gb|AY105107.1| Zea mays PCO140468 mRNA sequence
          Length = 1297

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                       
Query: 182 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 241
           |||| ||||||  ||||||||||||  ||||| ||||| |||||  ||||||||| ||| 
Sbjct: 970 cgggcgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgtac 911

                        
Query: 242 tgcatgtagttcc 254
           |||| | ||||||
Sbjct: 910 tgcaagcagttcc 898
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     gccgcgctcggcggcgctgg 293
               ||||||||||||||||||||
Sbjct: 2850506 gccgcgctcggcggcgctgg 2850487
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>gb|AY210803.1| Aphonopelma hentzi 5.8S ribosomal RNA gene, complete sequence; and
           28S ribosomal RNA gene, partial sequence
          Length = 4401

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 ggaaccgccagccgtcggcg 229
           ||||||||||||||||||||
Sbjct: 529 ggaaccgccagccgtcggcg 548
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   tcggcggcgctgggccggcgcgtc 304
             ||||||||||||||||||| ||||
Sbjct: 62532 tcggcggcgctgggccggcccgtc 62509
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>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    gatggatcaatggatggctg 127
              ||||||||||||||||||||
Sbjct: 118704 gatggatcaatggatggctg 118723
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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    cgtcggcgcagtagtcgtag 241
              ||||||||||||||||||||
Sbjct: 150203 cgtcggcgcagtagtcgtag 150184
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>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete
             sequence
          Length = 132427

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     agaattcattcacctttatt 25
             ||||||||||||||||||||
Sbjct: 43302 agaattcattcacctttatt 43321
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    tcggcggcgctgggccggcgcgtc 304
              |||||||||| |||||||||||||
Sbjct: 131365 tcggcggcgcggggccggcgcgtc 131388
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>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full
            insert sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  cgtcggcgcagtagtcgtag 241
            ||||||||||||||||||||
Sbjct: 1231 cgtcggcgcagtagtcgtag 1212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,271,868
Number of Sequences: 3902068
Number of extensions: 2271868
Number of successful extensions: 45206
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44733
Number of HSP's gapped (non-prelim): 473
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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