>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 34/115 (29%), Positives = 47/115 (40%)
 Frame = +2

Query: 50  DALASDVPAXXXXXXI*VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASS 229
           ++ ++ VP           T  TSSTT   S P+P+      E  S+  V  PS+    S
Sbjct: 548 ESSSAPVPTPSSSTTESSSTPVTSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTES 606

Query: 230 PRACPPLPLEWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPASPTENSIRHALP 394
             A  P P    ST     APV ++TT         A  P+P+S T  S    +P
Sbjct: 607 SSAPAPTPSS--STTESSSAPVTSSTT-----ESSSAPVPTPSSSTTESSSAPVP 654



 Score = 33.9 bits (76), Expect = 0.26
 Identities = 31/93 (33%), Positives = 41/93 (44%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           TSSTT   S P+P+      E  S+  V  PS+    S  A  P+P    ST     APV
Sbjct: 696 TSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSA--PVPTPSSSTTESSSAPV 752

Query: 296 AAATTRMGCCSGPHATHPSPASPTENSIRHALP 394
            ++TT         A  P+P+S T  S    +P
Sbjct: 753 TSSTT-----ESSSAPVPTPSSSTTESSSAPVP 780



 Score = 33.9 bits (76), Expect = 0.26
 Identities = 26/87 (29%), Positives = 38/87 (43%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           TSSTT   S P+P+         STT        ++++  +  P+P    ST     APV
Sbjct: 447 TSSTTESSSAPVPTPSS------STTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV 500

Query: 296 AAATTRMGCCSGPHATHPSPASPTENS 376
            ++TT         A  P+P+S T  S
Sbjct: 501 TSSTT-----ESSSAPVPTPSSSTTES 522



 Score = 32.3 bits (72), Expect = 0.75
 Identities = 27/83 (32%), Positives = 37/83 (44%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           TSSTT   S P+P+      E  S+  V  PS+    S  A  P+P    ST     APV
Sbjct: 627 TSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSA--PVPTPSSSTTESSSAPV 683

Query: 296 AAATTRMGCCSGPHATHPSPASP 364
            ++TT         +T  S ++P
Sbjct: 684 TSSTTESSSAPVTSSTTESSSAP 706



 Score = 32.3 bits (72), Expect = 0.75
 Identities = 26/87 (29%), Positives = 37/87 (42%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           TSSTT   S P+ S         STT        ++++  +  P+P    ST     APV
Sbjct: 423 TSSTTESSSAPVTS---------STTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV 473

Query: 296 AAATTRMGCCSGPHATHPSPASPTENS 376
            ++TT         A  P+P+S T  S
Sbjct: 474 TSSTT-----ESSSAPVPTPSSSTTES 495



 Score = 32.0 bits (71), Expect = 0.98
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*------PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVA 277
           TSSTT   S P+P+           P   STT        ++++  +  P+P    ST  
Sbjct: 345 TSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTE 404

Query: 278 GPCAPVAAATTRMGCCSGPHATHPSPASPTENS 376
              APV ++TT         +T  S ++P  +S
Sbjct: 405 SSSAPVTSSTTESSSAPVTSSTTESSSAPVTSS 437



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           +SSTT   S P+P+         STT        ++++  +  P+P    ST     APV
Sbjct: 318 SSSTTESSSAPVPTPSS------STTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV 371

Query: 296 AAATTRMGCCSGPHATHPSPASP 364
            ++TT         +T  S ++P
Sbjct: 372 TSSTTESSSAPVTSSTTESSSAP 394



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/93 (26%), Positives = 38/93 (40%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           +SSTT   S P P+         STT        ++++  +  P+P    ST      PV
Sbjct: 516 SSSTTESSSAPAPTPSS------STTESSSAPVTSSTTESSSAPVPTPSSSTTESSSTPV 569

Query: 296 AAATTRMGCCSGPHATHPSPASPTENSIRHALP 394
            ++TT         A  P+P+S T  S    +P
Sbjct: 570 TSSTT-----ESSSAPVPTPSSSTTESSSAPVP 597



 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/95 (28%), Positives = 40/95 (42%)
 Frame = +2

Query: 116  TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
            TSSTT   S P+P+      E  S+  V  PS+    S  A  P+P    ST     APV
Sbjct: 753  TSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSA--PVPTPSSSTTESSVAPV 809

Query: 296  AAATTRMGCCSGPHATHPSPASPTENSIRHALPGT 400
               ++     S   ++ P  +S   +S+    P +
Sbjct: 810  PTPSSSSNITSSAPSSTPFSSSTESSSVPVPTPSS 844



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 23/87 (26%), Positives = 38/87 (43%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           +SSTT   S P+ S+         ++    P+  ++++  +  P P    ST     APV
Sbjct: 489 SSSTTESSSAPVTSSTT------ESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPV 542

Query: 296 AAATTRMGCCSGPHATHPSPASPTENS 376
            ++TT         A  P+P+S T  S
Sbjct: 543 TSSTT-----ESSSAPVPTPSSSTTES 564



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
 Frame = +2

Query: 116  TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSA---VNASSPRACP----------PLPL 256
            +SSTT   S P+P+      E  S   V  PS+   + +S+P + P          P+P 
Sbjct: 783  SSSTTESSSAPVPTPSSSTTES-SVAPVPTPSSSSNITSSAPSSTPFSSSTESSSVPVPT 841

Query: 257  EWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPASPTENSIRHALP 394
               ST     APV+++TT       P    PS +S   +S   ++P
Sbjct: 842  PSSSTTESSSAPVSSSTTESSVAPVP---TPSSSSNITSSAPSSIP 884

>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 209 SAVNASSPRACPPLPLEWYSTVAGPCAPVAAATTRM---GCCSGPHATHPSPASPTENSI 379
           SA + S  R     P  +         P AAA  R    G  SGP   HPSP++P E+ +
Sbjct: 575 SAASVSEVRNQNQDPRRYGKVPRTASTPNAAALLRQSLNGSASGPPTNHPSPSTPPESGL 634

Query: 380 RHALP 394
             A+P
Sbjct: 635 SSAVP 639

>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA|
          Length = 865

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 290 PVAAATTRM---GCCSGPHATHPSPASPTENSIRHALP 394
           P AAA  R    G  SGP   HPSP++P E+ +  A+P
Sbjct: 607 PNAAALLRQSLNGSASGPPTNHPSPSTPPESGLSSAVP 644

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = +2

Query: 122 STTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPC-APVA 298
           + T P S  LP+         STT   F    ++  P A  PLP  ++     P  AP  
Sbjct: 728 TATAPSSSSLPTTT-------STTAPTFQPVFSSMGPPASVPLPAPFFKQTTTPATAPTT 780

Query: 299 AATTRMGCCSGPHATHP-SPASPTENS 376
            A    G  S   A  P + ASP+ +S
Sbjct: 781 TAPLFTGLASATSAVAPITSASPSTDS 807

>SYA_SYNP6 (Q5N4B5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 892

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -2

Query: 474 AVPCGSRAV--ELIAGVEAALVQEVDTVPGSACRMEFSVGDAGDGCVACGPEQQPMRVVA 301
           A+P G   V  E + GV+AA +Q       +A R++  +GDAG   +   PE+  + +VA
Sbjct: 777 AIPVGDAQVLVETLTGVDAAALQT------AAERLQQKLGDAGAVVLGSSPEEGKVTLVA 830

Query: 300 AATGAQGPATV 268
           A     GPA +
Sbjct: 831 AF----GPAII 837

>SN1L2_HUMAN (Q9H0K1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
            2.7.11.1) (Qin-induced kinase)
          Length = 926

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
 Frame = +2

Query: 134  PQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAP------- 292
            P  EP    M + P L     ++     + S PRA PPLP +       P  P       
Sbjct: 776  PVLEPSSEQMQYSPFLSQYQEMQLQPLPSTSGPRAAPPLPTQLQQQQPPPPPPPPPPRQP 835

Query: 293  -VAAATTRMG--CCSGPHATHPSPASPT 367
              A A  +     C  P A  P+P  PT
Sbjct: 836  GAAPAPLQFSYQTCELPSAASPAPDYPT 863

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/87 (28%), Positives = 34/87 (39%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 295
           T+STT      +PS     P    TT        + +S     P P+   ST + P    
Sbjct: 17  TTSTTSAPITSMPSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTST 76

Query: 296 AAATTRMGCCSGPHATHPSPASPTENS 376
            +A+T     SGP  T PSP   T  +
Sbjct: 77  TSAST-ASTTSGP-GTTPSPVPTTSTT 101



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
 Frame = +2

Query: 116 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGP---- 283
           TS+T+GP + P P          +T+     +A   S P   P  P+   ST + P    
Sbjct: 50  TSTTSGPGTTPSPVPTTSTTSAPTTSTTSASTASTTSGPGTTPS-PVPTTSTTSAPTTST 108

Query: 284 -CAPVAAATTRMGCCSGPHATHPSPASPTENSIRHALPGT 400
             A  A+ T+  G    P  T  + ++PT ++   + PGT
Sbjct: 109 TSASTASTTSGPGTSLSPVPTTSTTSAPTTSTT--SGPGT 146

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
 Frame = +2

Query: 104  QTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRAC--------PPLPLE 259
            Q  +   T  P S+P+P      P   +   +  P A  AS+P           P   + 
Sbjct: 957  QQQQQPPTLPPGSQPIPPTGAAGPP--TVHGLAVPPAAVASAPPGSGAPPGSLGPSEQIG 1014

Query: 260  WYSTVAGPCAPVAAATTRMGCCS------GPHATHPSPASPTENSIRHALPGTV 403
               T AGP  P  A   + G         GPH   P P  PT  S+   +PG V
Sbjct: 1015 QAGTTAGPQQPQQAGAPQPGAVPPGVPPPGPHGPSPFPNQPTPPSM---MPGAV 1065

>HRPB_ECOLI (P37024) ATP-dependent RNA helicase hrpB (EC 3.6.1.-)|
          Length = 809

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
 Frame = -2

Query: 483  AHYAVPCGSRAVELIAGVEAALVQEVDTVPGSACRMEFSVGDAGDGCVACG--------- 331
            AHY VP GSR          A+    D  P  A RM+   G+A +  +A G         
Sbjct: 705  AHYTVPTGSR---------IAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755

Query: 330  -PEQQPMRVVAAATGAQGPATVEYHSSGKGGHAR----GELAFTAEGNRTR 193
             P Q+P+++    +     A  E     KG + +     + A TA   RT+
Sbjct: 756  SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806

>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +2

Query: 206 PSAVNASSPRACPPLPLEWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPASPTENSIRH 385
           P A+  + P A PP P         P APVAA        + P A   +P +P       
Sbjct: 130 PPAIAGARPVAPPPAP---------PPAPVAAPVVTPAAVAAPPAPVQAPVAPPPTQAPV 180

Query: 386 ALPG 397
           A PG
Sbjct: 181 AEPG 184

>LRP10_HUMAN (Q7Z4F1) Low-density lipoprotein receptor-related protein 10|
           precursor
          Length = 713

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/92 (27%), Positives = 36/92 (39%)
 Frame = +2

Query: 104 QTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGP 283
           + SE  S   P + PL +          T   R   AV        PPLP++        
Sbjct: 574 RASEARSQVTPSAAPLEALDG------GTGPAREGGAVGGQDGEQAPPLPIK-------- 619

Query: 284 CAPVAAATTRMGCCSGPHATHPSPASPTENSI 379
            AP+ +A+T     + P A  P P+ P E S+
Sbjct: 620 -APLPSASTSPAPTTVPEAPGPLPSLPLEPSL 650

>YPJA_ECOLI (P52143) Hypothetical outer membrane protein ypjA|
          Length = 1569

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 306  VAAATGAQGPATVEYHSSGKGGHARGELAFTAEGN 202
            VA    + G A   YHS+G GGH    + FT +GN
Sbjct: 1404 VAGKMSSGGAANGSYHSNGLGGHIETGMRFT-DGN 1437

>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)|
          Length = 627

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
 Frame = -2

Query: 396 PGSACRMEFSVGDAGDGCVACGPEQQP-----MRVVAAATGAQGPATVEYHSSGKGGHAR 232
           PGSA     + G    G    GP QQ          AAA  A GP        G GG+A 
Sbjct: 349 PGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAP 408

Query: 231 GELAFTAEGN 202
           G+   +  G+
Sbjct: 409 GQQGPSGPGS 418

>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 218 NASSPRACPPLPLEWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPAS 361
           N + P A PP      +T A P AP A  +      +GP A  P+PA+
Sbjct: 237 NPTGPAANPP------ATTANPPAPAANPSAPAATPTGPAANPPAPAA 278

>LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A chain)|
          Length = 3084

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = -2

Query: 483  AHYAVPCGSRAVELIAGVEAALVQEVDTVPGSACRMEFSVGDAGDGCVACGPEQQPMRVV 304
            A+ ++  G +AVEL A  EAAL+ E+   P          G AG  C  C P     R  
Sbjct: 1343 ANISMEVGRKAVELPAEGEAALLLELCVCP---------PGTAGHSCQDCAPGY--YREK 1391

Query: 303  AAATGAQGP 277
               +G +GP
Sbjct: 1392 LPESGGRGP 1400

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +2

Query: 107 TSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPC 286
           TS  S+   P + P P+     P   ST     P+      P+  PP P        GP 
Sbjct: 438 TSSASAAKTPPTTPAPTT----PPPTSTHATPRPTT---PGPQTTPPGP-----ATPGPV 485

Query: 287 APVAAATTRMGCCSGPHATHPSP-ASPTENSIRHALPGT 400
              AA T      + P AT P P A+    +   A PGT
Sbjct: 486 GASAAPTADSPLTASPPATAPGPSAANVSVAATTATPGT 524

>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)|
          Length = 279

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 330 PEQQPMRVVAAATGAQGPATVEYHSSGKGGHARG 229
           P++ P+ V+A+++GA+GP  +   SS +    RG
Sbjct: 18  PQKPPVEVLASSSGAEGPPLMRKRSSKREKGLRG 51

>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 209 SAVNASSPRACP---PLPLEWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPA 358
           S V A +P A P   PLP    S+  G  AP AAA      CS   A+ P PA
Sbjct: 415 SCVFADAPPALPALPPLPPRAPSSRPGEGAPAAAAAAG---CSASSASSPGPA 464

>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane|
           protein P.68]
          Length = 916

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 264 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 145
           +H  G  G+ RG+  FT +G      ++  GY T    SG
Sbjct: 696 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSG 735

>US32_HCMVA (P09708) Hypothetical protein HHRF7|
          Length = 183

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 257 PVARAGTRAASWRSRRRGTARGWC 186
           P  RA  RAA+WR + R   R WC
Sbjct: 45  PTTRAERRAANWRRQMRRLHRLWC 68

>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/80 (27%), Positives = 28/80 (35%)
 Frame = +2

Query: 125 TTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPVAAA 304
           T  P S P PS                P+   A++P A  P P+     VA P AP    
Sbjct: 24  TAAPASAPTPST---------------PAPTPAATP-AASPAPVSSDPAVAAPAAPGQTP 67

Query: 305 TTRMGCCSGPHATHPSPASP 364
            +       P  + P PA P
Sbjct: 68  ASAPAPAQTPAPSQPGPALP 87

>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane|
           protein P.70]
          Length = 922

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 264 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 145
           +H  G  G+ RG+  FT +G      ++  GY T    SG
Sbjct: 702 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSG 741


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,913,307
Number of Sequences: 219361
Number of extensions: 756143
Number of successful extensions: 3442
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3435
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)