ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||||||||| ||||||||||||||||||||||||| |||| ||| | ||| |||| Sbjct: 880 ccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccgggca 821 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| |||||||||||||||||||||||||| |||||| | ||||||||| ||||| | Sbjct: 820 cggtgcacacctcctgcaccagcgccgcctccatgccggccaccagctccaccgcgcgtg 761 Query: 459 acccgcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 |||| || || ||||||||||||||||||||||||||| Sbjct: 760 cgccgcctggaacggcgtagtgcgccgcgtccacgtacttg 720 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 117 cgtcgtcgacgacggggccgcagagcgagccg 148 |||||||||||||||| || ||||||| |||| Sbjct: 1072 cgtcgtcgacgacgggcccacagagcgtgccg 1041
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||||||||| ||||||||||||||||||||||||| |||| ||| | ||| |||| Sbjct: 24721204 ccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccgggca 24721145 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| |||||||||||||||||||||||||| |||||| | ||||||||| ||||| | Sbjct: 24721144 cggtgcacacctcctgcaccagcgccgcctccatgccggccaccagctccaccgcgcgtg 24721085 Query: 459 acccgcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 |||| || || ||||||||||||||||||||||||||| Sbjct: 24721084 cgccgcctggaacggcgtagtgcgccgcgtccacgtacttg 24721044 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| ||||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 24717508 gcacccgtcgccggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 24717449 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 | ||||||||||| || ||||| ||||| ||||| | |||||| || ||||| | || Sbjct: 24717448 gctcacctcctgcagcatcgccgtctccatgccggacaccagctcaaccgcgcgggcgcc 24717389 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || ||||| ||||||||||||||||| | ||||||| Sbjct: 24717388 gcccggcacagcgtagtgcgccgcgtcgatgtacttg 24717352 Score = 87.7 bits (44), Expect = 3e-14 Identities = 101/120 (84%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||| ||||| | |||||||||||| |||||||||| || | ||| |||||||||| Sbjct: 24703460 ccacgcaaccgtcgctggcgtccccgaccgagaactccagcctgtacgacctccccggca 24703401 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||||| Sbjct: 24703400 cggtgcgcacctcctgcatcagcgccgtctcgagcccggacaccagctccacggcgcgcg 24703341 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 |||||||| || |||||||||||||||||| || || | ||| | ||| |||||||| Sbjct: 24723400 gcacccgttgcccgcgtccccgacggagaacgacagcctgtacgaccgcccgggcacggt 24723341 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||||||||||||||||| | |||| |||||| | |||||||||||||||| Sbjct: 24723340 cgccacctcctgcaccagcgcggtctccctgccggccacaagctccacggcgcgcg 24723285 Score = 58.0 bits (29), Expect = 3e-05 Identities = 125/157 (79%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 |||||||| ||||||||||||||||||||| || | | || | ||| |||||||| Sbjct: 24728054 gcacccgttgccggcgtccccgacggagaacgacagcgtgtaccgccgcccgggcacggt 24727995 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 ||||||||||||||||||| |||| ||||| | || |||||||||| ||| || Sbjct: 24727994 cgccacctcctgcaccagcgcgcactccctcccggccaccatctccacggcgtgcgcgcc 24727935 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || |||||||||| | |||||| ||||||||||||| Sbjct: 24727934 gctcggcaccgcgtggcgcgccgagtccacgtacttg 24727898 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 107 acgagcgagacgtcgtcgacgacggggccgcagagcg 143 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 24703662 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 24703626 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 ctgcgcccccgtggccgccgccacc 307 |||||||||| |||||||||||||| Sbjct: 7514801 ctgcgcccccttggccgccgccacc 7514825 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcgatcagctccacggcgcg 456 |||||||||||||||||||| Sbjct: 25320656 gcgatcagctccacggcgcg 25320675 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 117 cgtcgtcgacgacggggccgcagagcgagccg 148 |||||||||||||||| || ||||||| |||| Sbjct: 24721396 cgtcgtcgacgacgggcccacagagcgtgccg 24721365
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||||||||| ||||||||||||||||||||||||| |||| ||| | ||| |||| Sbjct: 1001 ccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccgggca 942 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| |||||||||||||||||||||||||| |||||| | ||||||||| ||||| | Sbjct: 941 cggtgcacacctcctgcaccagcgccgcctccatgccggccaccagctccaccgcgcgtg 882 Query: 459 acccgcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 |||| || || ||||||||||||||||||||||||||| Sbjct: 881 cgccgcctggaacggcgtagtgcgccgcgtccacgtacttg 841 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 117 cgtcgtcgacgacggggccgcagagcgagccg 148 |||||||||||||||| || ||||||| |||| Sbjct: 1193 cgtcgtcgacgacgggcccacagagcgtgccg 1162
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||||||||| ||||||||||||||||||||||||| |||| ||| | ||| |||| Sbjct: 110727 ccacgcacccgtcgccggcgtccccgacggagaactccagccggtacgaccgcccgggca 110668 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| |||||||||||||||||||||||||| |||||| | ||||||||| ||||| | Sbjct: 110667 cggtgcacacctcctgcaccagcgccgcctccatgccggccaccagctccaccgcgcgtg 110608 Query: 459 acccgcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 |||| || || ||||||||||||||||||||||||||| Sbjct: 110607 cgccgcctggaacggcgtagtgcgccgcgtccacgtacttg 110567 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| ||||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 107031 gcacccgtcgccggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 106972 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 | ||||||||||| || ||||| ||||| ||||| | |||||| || ||||| | || Sbjct: 106971 gctcacctcctgcagcatcgccgtctccatgccggacaccagctcaaccgcgcgggcgcc 106912 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || ||||| ||||||||||||||||| | ||||||| Sbjct: 106911 gcccggcacagcgtagtgcgccgcgtcgatgtacttg 106875 Score = 87.7 bits (44), Expect = 3e-14 Identities = 101/120 (84%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||| ||||| | |||||||||||| |||||||||| || | ||| |||||||||| Sbjct: 92983 ccacgcaaccgtcgctggcgtccccgaccgagaactccagcctgtacgacctccccggca 92924 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||||| Sbjct: 92923 cggtgcgcacctcctgcatcagcgccgtctcgagcccggacaccagctccacggcgcgcg 92864 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 |||||||| || |||||||||||||||||| || || | ||| | ||| |||||||| Sbjct: 112923 gcacccgttgcccgcgtccccgacggagaacgacagcctgtacgaccgcccgggcacggt 112864 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||||||||||||||||| | |||| |||||| | |||||||||||||||| Sbjct: 112863 cgccacctcctgcaccagcgcggtctccctgccggccacaagctccacggcgcgcg 112808 Score = 58.0 bits (29), Expect = 3e-05 Identities = 125/157 (79%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 |||||||| ||||||||||||||||||||| || | | || | ||| |||||||| Sbjct: 117577 gcacccgttgccggcgtccccgacggagaacgacagcgtgtaccgccgcccgggcacggt 117518 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 ||||||||||||||||||| |||| ||||| | || |||||||||| ||| || Sbjct: 117517 cgccacctcctgcaccagcgcgcactccctcccggccaccatctccacggcgtgcgcgcc 117458 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || |||||||||| | |||||| ||||||||||||| Sbjct: 117457 gctcggcaccgcgtggcgcgccgagtccacgtacttg 117421 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 107 acgagcgagacgtcgtcgacgacggggccgcagagcg 143 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 93185 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 93149 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 117 cgtcgtcgacgacggggccgcagagcgagccg 148 |||||||||||||||| || ||||||| |||| Sbjct: 110919 cgtcgtcgacgacgggcccacagagcgtgccg 110888
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| ||||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 882 gcacccgtcgccggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 823 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 | ||||||||||| || ||||| ||||| ||||| | |||||| || ||||| | || Sbjct: 822 gctcacctcctgcagcatcgccgtctccatgccggacaccagctcaaccgcgcgggcgcc 763 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || ||||| ||||||||||||||||| | ||||||| Sbjct: 762 gcccggcacagcgtagtgcgccgcgtcgatgtacttg 726
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| ||||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 1286 gcacccgtcgccggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 1227 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 | ||||||||||| || ||||| ||||| ||||| | |||||| || ||||| | || Sbjct: 1226 gctcacctcctgcagcatcgccgtctccatgccggacaccagctcaaccgcgcgggcgcc 1167 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || ||||| ||||||||||||||||| | ||||||| Sbjct: 1166 gcccggcacagcgtagtgcgccgcgtcgatgtacttg 1130
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 97.6 bits (49), Expect = 3e-17 Identities = 130/157 (82%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| ||||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 1116 gcacccgtcgccggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 1057 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgaccc 462 | ||||||||||| || ||||| ||||| ||||| | |||||| || ||||| | || Sbjct: 1056 gctcacctcctgcagcatcgccgtctccatgccggacaccagctcaaccgcgcgggcgcc 997 Query: 463 gcagggcaccgcgtagtgcgccgcgtccacgtacttg 499 || ||||| ||||||||||||||||| | ||||||| Sbjct: 996 gcccggcacagcgtagtgcgccgcgtcgatgtacttg 960
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 87.7 bits (44), Expect = 3e-14 Identities = 101/120 (84%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||| ||||| | |||||||||||| |||||||||| || | ||| |||||||||| Sbjct: 883 ccacgcaaccgtcgctggcgtccccgaccgagaactccagcctgtacgacctccccggca 824 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||||| Sbjct: 823 cggtgcgcacctcctgcatcagcgccgtctcgagcccggacaccagctccacggcgcgcg 764 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 107 acgagcgagacgtcgtcgacgacggggccgcagagcg 143 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 1085 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 1049
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 87.7 bits (44), Expect = 3e-14 Identities = 101/120 (84%) Strand = Plus / Minus Query: 339 ccacgcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggca 398 ||||||| ||||| | |||||||||||| |||||||||| || | ||| |||||||||| Sbjct: 1014 ccacgcaaccgtcgctggcgtccccgaccgagaactccagcctgtacgacctccccggca 955 Query: 399 cggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||||| Sbjct: 954 cggtgcgcacctcctgcatcagcgccgtctcgagcccggacaccagctccacggcgcgcg 895 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 107 acgagcgagacgtcgtcgacgacggggccgcagagcg 143 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 1216 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 1180
>ref|NM_187540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| | ||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 585 gcacccgtcgctggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 526 Query: 403 gtccacctcctgcaccagcgccgcctccacgccgg 437 | |||||||||||||| ||||| ||||| ||||| Sbjct: 525 gctcacctcctgcaccatcgccgtctccatgccgg 491
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| | ||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 12002159 gcacccgtcgctggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 12002218 Query: 403 gtccacctcctgcaccagcgccgcctccacgccgg 437 | |||||||||||||| ||||| ||||| ||||| Sbjct: 12002219 gctcacctcctgcaccatcgccgtctccatgccgg 12002253 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 gagcgagacgtcgtcgacgacg 130 |||||||||||||||||||||| Sbjct: 21857412 gagcgagacgtcgtcgacgacg 21857433 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 35012951 cccgtggccgccgccaccac 35012932
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| | ||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 11998922 gcacccgtcgctggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 11998981 Query: 403 gtccacctcctgcaccagcgccgcctccacgccgg 437 | |||||||||||||| ||||| ||||| ||||| Sbjct: 11998982 gctcacctcctgcaccatcgccgtctccatgccgg 11999016 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 gagcgagacgtcgtcgacgacg 130 |||||||||||||||||||||| Sbjct: 21850441 gagcgagacgtcgtcgacgacg 21850462 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 35103023 cccgtggccgccgccaccac 35103004
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| | ||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 22739 gcacccgtcgctggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 22798 Query: 403 gtccacctcctgcaccagcgccgcctccacgccgg 437 | |||||||||||||| ||||| ||||| ||||| Sbjct: 22799 gctcacctcctgcaccatcgccgtctccatgccgg 22833
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 ||||||||| | ||||||||||||||||||||||| || | ||| | ||| |||||||| Sbjct: 103421 gcacccgtcgctggcgtccccgacggagaactccagcctgtacgaccgcccgggcacggt 103480 Query: 403 gtccacctcctgcaccagcgccgcctccacgccgg 437 | |||||||||||||| ||||| ||||| ||||| Sbjct: 103481 gctcacctcctgcaccatcgccgtctccatgccgg 103515
>ref|NM_186238.1| Oryza sativa (japonica cultivar-group), mRNA Length = 921 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 346 cccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggtgtc 405 |||||| ||||||||||| ||||||||||||| || | ||| ||| ||||||||| Sbjct: 216 cccgtcgccggcgtccccaacggagaactccagcctgtacgacagcccgggcacggtgct 157 Query: 406 cacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgacccgca 465 |||||||||||||| ||||| ||||| ||||| | || ||| || |||| | |||| Sbjct: 156 cacctcctgcaccatcgccgtctccatgccggtcaccaactcaaccacgcgggcgccgcc 97 Query: 466 gggcaccgcgtagtgcgccgcgtccacgtacttg 499 ||||||||||||||||||| ||| | ||||||| Sbjct: 96 cggcaccgcgtagtgcgccgtgtcgatgtacttg 63
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 346 cccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggtgtc 405 |||||| ||||||||||| ||||||||||||| || | ||| ||| ||||||||| Sbjct: 1748227 cccgtcgccggcgtccccaacggagaactccagcctgtacgacagcccgggcacggtgct 1748168 Query: 406 cacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgacccgca 465 |||||||||||||| ||||| ||||| ||||| | || ||| || |||| | |||| Sbjct: 1748167 cacctcctgcaccatcgccgtctccatgccggtcaccaactcaaccacgcgggcgccgcc 1748108 Query: 466 gggcaccgcgtagtgcgccgcgtccacgtacttg 499 ||||||||||||||||||| ||| | ||||||| Sbjct: 1748107 cggcaccgcgtagtgcgccgtgtcgatgtacttg 1748074 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 cgcctccacgccggcgatcagctcc 448 ||||||||||||||||| ||||||| Sbjct: 19918352 cgcctccacgccggcgagcagctcc 19918328 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cgccgcctccacgccggcga 440 |||||||||||||||||||| Sbjct: 28414127 cgccgcctccacgccggcga 28414108
>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1606_D04 Length = 92729 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 346 cccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggtgtc 405 |||||| ||||||||||| ||||||||||||| || | ||| ||| ||||||||| Sbjct: 90427 cccgtcgccggcgtccccaacggagaactccagcctgtacgacagcccgggcacggtgct 90368 Query: 406 cacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgacccgca 465 |||||||||||||| ||||| ||||| ||||| | || ||| || |||| | |||| Sbjct: 90367 cacctcctgcaccatcgccgtctccatgccggtcaccaactcaaccacgcgggcgccgcc 90308 Query: 466 gggcaccgcgtagtgcgccgcgtccacgtacttg 499 ||||||||||||||||||| ||| | ||||||| Sbjct: 90307 cggcaccgcgtagtgcgccgtgtcgatgtacttg 90274
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 67.9 bits (34), Expect = 3e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 346 cccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggtgtc 405 |||||| ||||||||||| ||||||||||||| || | ||| ||| ||||||||| Sbjct: 446 cccgtcgccggcgtccccaacggagaactccagcctgtacgacagcccgggcacggtgct 387 Query: 406 cacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcgacccgca 465 |||||||||||||| ||||| ||||| ||||| | || ||| || |||| | |||| Sbjct: 386 cacctcctgcaccatcgccgtctccatgccggtcaccaactcaaccacgcgggcgccgcc 327 Query: 466 gggcaccgcgtagtgcgccgcgtccacgtacttg 499 ||||||||||||||||||| ||| | ||||||| Sbjct: 326 cggcaccgcgtagtgcgccgtgtcgatgtacttg 293
>ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 343 gcacccgtccccggcgtccccgacggagaactccatccggcacgcgctccccggcacggt 402 |||||||| || |||||||||||||||||| || || | ||| | ||| |||||||| Sbjct: 882 gcacccgttgcccgcgtccccgacggagaacgacagcctgtacgaccgcccgggcacggt 823 Query: 403 gtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcgcgcg 458 ||||||||||||||||||| | |||| |||||| | |||||||||||||||| Sbjct: 822 cgccacctcctgcaccagcgcggtctccctgccggccacaagctccacggcgcgcg 767
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 821 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 762 Query: 455 cg 456 || Sbjct: 761 cg 760 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1080 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1038
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 24179340 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 24179281 Query: 455 cg 456 || Sbjct: 24179280 cg 24179279 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 24179599 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 24179557
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 155162 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 155103 Query: 455 cg 456 || Sbjct: 155102 cg 155101 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 155421 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 155379
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 3904 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 3845 Query: 455 cg 456 || Sbjct: 3844 cg 3843 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 4163 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 4121
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 809 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 750 Query: 455 cg 456 || Sbjct: 749 cg 748 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1068 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1026
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 938 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 879 Query: 455 cg 456 || Sbjct: 878 cg 877 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1197 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1155
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 395 ggcacggtgtccacctcctgcaccagcgccgcctccacgccggcgatcagctccacggcg 454 ||||||||| |||||||||||||||||||| |||| ||| | | ||||||||||||| Sbjct: 934 ggcacggtgcgcacctcctgcaccagcgccgactccttgccccccaccagctccacggcg 875 Query: 455 cg 456 || Sbjct: 874 cg 873 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 148 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1193 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1151
>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein (OSJNBb0015I11.17), mRNA Length = 1110 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 415 caccagcgccgcctccacgccggcgatcagc 445 |||||||||||||| ||||||||||| |||| Sbjct: 51 caccagcgccgccttcacgccggcgagcagc 21
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 415 caccagcgccgcctccacgccggcgatcagc 445 |||||||||||||| ||||||||||| |||| Sbjct: 106743 caccagcgccgccttcacgccggcgagcagc 106713
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 415 caccagcgccgcctccacgccggcgatcagc 445 |||||||||||||| ||||||||||| |||| Sbjct: 20705291 caccagcgccgccttcacgccggcgagcagc 20705261
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 415 caccagcgccgcctccacgccggcgatcagc 445 |||||||||||||| ||||||||||| |||| Sbjct: 20716563 caccagcgccgccttcacgccggcgagcagc 20716533
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 gagcgagacgtcgtcgacgacg 130 |||||||||||||||||||||| Sbjct: 30404 gagcgagacgtcgtcgacgacg 30383
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 420 gcgccgcctccacgccggcgatcagc 445 |||||||| ||||||||||||||||| Sbjct: 6622020 gcgccgccgccacgccggcgatcagc 6622045
>emb|CR450685.13| Zebrafish DNA sequence from clone DKEY-83K24 in linkage group 8, complete sequence Length = 195473 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 404 tccacctcctgcaccagcgccgcctccac 432 |||||||||| ||||| |||||||||||| Sbjct: 14894 tccacctcctccaccaccgccgcctccac 14866
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 418 cagcgccgcctccacgccggcgatcagct 446 ||||||||| |||||||||||||||||| Sbjct: 347781 cagcgccgcgaccacgccggcgatcagct 347809
>gb|AE011708.1| Xanthomonas axonopodis pv. citri str. 306, section 86 of 469 of the complete genome Length = 13079 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 222 ccagctcgccgcgcgcgtgcccgcc 246 ||||| ||||||||||||||||||| Sbjct: 813 ccagcacgccgcgcgcgtgcccgcc 789
>ref|XM_691202.1| PREDICTED: Danio rerio similar to ETS domain protein Elk-3 (ETS-related protein NET) (ETS-related protein ERP) (LOC567895), mRNA Length = 2897 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 404 tccacctcctgcaccagcgccgcctccac 432 |||||||||| ||||| |||||||||||| Sbjct: 1148 tccacctcctccaccaccgccgcctccac 1120
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 ctccacgccggcgatcagctc 447 ||||||||||||||||||||| Sbjct: 5738556 ctccacgccggcgatcagctc 5738576 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 426 cctccacgccggcgatcagctccacggc 453 |||||||||||||| || |||||||||| Sbjct: 4058290 cctccacgccggcggtccgctccacggc 4058317 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccagctcgccgcgcgcgtgc 241 |||||||||||||||||||| Sbjct: 3841673 ccagctcgccgcgcgcgtgc 3841654
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 cgcctccacgccggcgatcagctcc 448 ||||||||||||||||| ||||||| Sbjct: 83002 cgcctccacgccggcgagcagctcc 82978
>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22, complete sequence Length = 181498 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 ctgcgcccccgtggccgccgccacc 307 |||||||||| |||||||||||||| Sbjct: 37274 ctgcgcccccttggccgccgccacc 37298
>ref|XM_525966.1| PREDICTED: Pan troglodytes similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC470585), mRNA Length = 2250 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 278 ggcccctgcgcccccgtggccgccgccaccac 309 |||||||||||||||| ||||||||| |||| Sbjct: 2112 ggcccctgcgcccccgccgccgccgccgccac 2081
>ref|XM_470372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3053 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 250 cccgtggccgccgccaccac 269
>ref|XM_473108.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcgatcagctccacggcgcg 456 |||||||||||||||||||| Sbjct: 1004 gcgatcagctccacggcgcg 985
>gb|AC161268.5| Mus musculus BAC clone RP23-198F11 from chromosome 16, complete sequence Length = 212995 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 gcgacccgcagggcaccgcg 475 |||||||||||||||||||| Sbjct: 152258 gcgacccgcagggcaccgcg 152277
>gb|AC160987.4| Mus musculus BAC clone RP23-248O24 from chromosome 16, complete sequence Length = 202729 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gcgacccgcagggcaccgcg 475 |||||||||||||||||||| Sbjct: 157547 gcgacccgcagggcaccgcg 157528
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 gctcgccgcgcgcgtgcccgccct 248 ||||||||||||| |||||||||| Sbjct: 3323694 gctcgccgcgcgcctgcccgccct 3323717
>ref|XM_866971.1| PREDICTED: Bos taurus similar to butyrophilin-like 7 (LOC615223), mRNA Length = 2151 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 caccagcgccgcctccacgc 434 |||||||||||||||||||| Sbjct: 996 caccagcgccgcctccacgc 977
>ref|XM_582922.2| PREDICTED: Bos taurus similar to butyrophilin-like 7 (LOC506473), partial mRNA Length = 1078 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 caccagcgccgcctccacgc 434 |||||||||||||||||||| Sbjct: 542 caccagcgccgcctccacgc 523
>gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromosome 17, complete sequence Length = 181509 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 164640 cccgtggccgccgccaccac 164659
>ref|XM_415487.1| PREDICTED: Gallus gallus similar to TBC1 domain family, member 13 (LOC417204), mRNA Length = 3932 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 2786 cccgtggccgccgccaccac 2767
>ref|XM_363957.1| Magnaporthe grisea 70-15 predicted protein (MG01884.4) partial mRNA Length = 1212 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ccagcgccgcctccacgccg 436 |||||||||||||||||||| Sbjct: 108 ccagcgccgcctccacgccg 127
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 13852 cccgtggccgccgccaccac 13833
>ref|XM_583872.2| PREDICTED: Bos taurus similar to RIKEN cDNA E130201N16, transcript variant 1 (LOC538952), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgctgccgtcggccatgg 164 |||||||||||||||||||| Sbjct: 254 gccgctgccgtcggccatgg 235
>ref|XM_865233.1| PREDICTED: Bos taurus similar to RIKEN cDNA E130201N16, transcript variant 2 (LOC538952), mRNA Length = 1466 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgctgccgtcggccatgg 164 |||||||||||||||||||| Sbjct: 499 gccgctgccgtcggccatgg 480
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gctcgccgcgcgcgtgcccgccct 248 ||||||||||||| |||||||||| Sbjct: 663335 gctcgccgcgcgcctgcccgccct 663312
>emb|AJ007313.1|SCO007313 Streptomyces coelicolor sigT, trxB and trxA genes, and ORF1 and ORF2 Length = 4026 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 gacgagcgagacgtcgtcgacgac 129 |||||||| ||||||||||||||| Sbjct: 1576 gacgagcgtgacgtcgtcgacgac 1599
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 cggcgcgcgacccgcagggc 469 |||||||||||||||||||| Sbjct: 430418 cggcgcgcgacccgcagggc 430437
>gb|AY066021.1| Homo sapiens excitotoxic amino acid transporter 2 mRNA, complete cds Length = 11692 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctccacggcgcgcgacccgc 464 |||||||||||||||||||| Sbjct: 78 ctccacggcgcgcgacccgc 59
>gb|AY027656.1| Bos taurus peri-attachment factor (P-AF) mRNA, partial sequence Length = 1673 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccgctgccgtcggccatgg 164 |||||||||||||||||||| Sbjct: 687 gccgctgccgtcggccatgg 668
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 ccgtgaacgccagctcgccgcgcg 236 ||||| |||||||||||||||||| Sbjct: 1855351 ccgtgcacgccagctcgccgcgcg 1855374
>ref|XM_967215.1| PREDICTED: Tribolium castaneum similar to CG17816-PB, isoform B (LOC661025), mRNA Length = 2232 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 ccccgtggccgccgccaccacgcg 312 |||||||||||||||| ||||||| Sbjct: 574 ccccgtggccgccgccgccacgcg 551
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gctcgccgcgcgcgtgcccgccct 248 ||||||||||||| |||||||||| Sbjct: 471950 gctcgccgcgcgcctgcccgccct 471927
>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24 Length = 304250 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 acgtcgtcgacgacggggccgcag 139 ||||||||||||||| |||||||| Sbjct: 181315 acgtcgtcgacgacgaggccgcag 181292
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 gacgagcgagacgtcgtcgacgac 129 |||||||| ||||||||||||||| Sbjct: 55637 gacgagcgtgacgtcgtcgacgac 55614
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcgatcagctccacggcgcg 456 |||||||||||||||||||| Sbjct: 104595 gcgatcagctccacggcgcg 104614
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcgatcagctccacggcgcg 456 |||||||||||||||||||| Sbjct: 47215 gcgatcagctccacggcgcg 47234
>ref|NM_004171.2| Homo sapiens solute carrier family 1 (glial high affinity glutamate transporter), member 2 (SLC1A2), mRNA Length = 11692 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ctccacggcgcgcgacccgc 464 |||||||||||||||||||| Sbjct: 78 ctccacggcgcgcgacccgc 59
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 408 cctcctgcaccagcgccgcctccacgcc 435 |||||| | ||||||||||||||||||| Sbjct: 68839 cctcctcctccagcgccgcctccacgcc 68812
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 408 cctcctgcaccagcgccgcctccacgcc 435 |||||| | ||||||||||||||||||| Sbjct: 61031 cctcctcctccagcgccgcctccacgcc 61058
>gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, complete sequence Length = 176602 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 278 ggcccctgcgcccccgtggccgccgccaccac 309 |||||||||||||||| ||||||||| |||| Sbjct: 20987 ggcccctgcgcccccgccgccgccgccgccac 21018
>gb|AC090625.5| Homo sapiens chromosome 11, clone RP4-683L5, complete sequence Length = 142522 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ctccacggcgcgcgacccgc 464 |||||||||||||||||||| Sbjct: 121722 ctccacggcgcgcgacccgc 121741
>ref|XM_939705.1| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC650617), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 278 ggcccctgcgcccccgtggccgccgccaccac 309 |||||| ||||||||| |||||||||||||| Sbjct: 1473 ggccccggcgcccccgccgccgccgccaccac 1442
>ref|XM_292968.5| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC344191), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 278 ggcccctgcgcccccgtggccgccgccaccac 309 |||||| ||||||||| |||||||||||||| Sbjct: 1473 ggccccggcgcccccgccgccgccgccaccac 1442
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cccctgcgcccccgtggccgccgc 303 |||| ||||||||||||||||||| Sbjct: 3147294 ccccggcgcccccgtggccgccgc 3147317
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 cctgcgcccccgtggccgccgcca 305 |||||| ||||||||||||||||| Sbjct: 11855906 cctgcggccccgtggccgccgcca 11855929
>gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-387A1, complete sequence Length = 175667 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 278 ggcccctgcgcccccgtggccgccgccaccac 309 |||||| ||||||||| |||||||||||||| Sbjct: 64234 ggccccggcgcccccgccgccgccgccaccac 64265
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 2529 cccgtggccgccgccaccac 2548
>gb|AF546154.1| Streptomyces sp. 171/Eco105 UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10246 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 429 ccacgccggcgatcagctccacgg 452 ||||||||||||||||||| |||| Sbjct: 1547 ccacgccggcgatcagctcgacgg 1524
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 ccagcgccgcctccacgccggcga 440 ||||||||||||| |||||||||| Sbjct: 3352767 ccagcgccgcctcaacgccggcga 3352744
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgagacgtcgtcgacgacgg 131 |||||||||||||||||||| Sbjct: 133774 cgagacgtcgtcgacgacgg 133755
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cgccgcctccacgccggcga 440 |||||||||||||||||||| Sbjct: 139690 cgccgcctccacgccggcga 139671
>dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgagacgtcgtcgacgacgg 131 |||||||||||||||||||| Sbjct: 233 cgagacgtcgtcgacgacgg 214
>dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full insert sequence Length = 1652 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgagacgtcgtcgacgacgg 131 |||||||||||||||||||| Sbjct: 223 cgagacgtcgtcgacgacgg 204
>dbj|AK070810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069M14, full insert sequence Length = 692 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cgagacgtcgtcgacgacgg 131 |||||||||||||||||||| Sbjct: 260 cgagacgtcgtcgacgacgg 279
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cggcgatcagctccacggcg 454 |||||||||||||||||||| Sbjct: 5660361 cggcgatcagctccacggcg 5660380
>dbj|AK067347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E16, full insert sequence Length = 3325 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cccgtggccgccgccaccac 309 |||||||||||||||||||| Sbjct: 523 cccgtggccgccgccaccac 542
>dbj|AK066614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074N01, full insert sequence Length = 3250 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgagacgtcgtcgacgacgg 131 |||||||||||||||||||| Sbjct: 35 cgagacgtcgtcgacgacgg 16
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccagctcgccgcgcgcgtgc 241 |||||||||||||||||||| Sbjct: 965408 ccagctcgccgcgcgcgtgc 965389
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 cctgcgcccccgtggccgccgcca 305 |||||| ||||||||||||||||| Sbjct: 11855577 cctgcggccccgtggccgccgcca 11855600 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,093,145 Number of Sequences: 3902068 Number of extensions: 3093145 Number of successful extensions: 77848 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74677 Number of HSP's gapped (non-prelim): 3147 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
