>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score =  106 bits (264), Expect = 3e-23
 Identities = 58/87 (66%), Positives = 59/87 (67%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACKYAI                NP            EI+AAHFEESMKYARRSV
Sbjct: 692 TEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSV 751

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 752 SDADIRKYQAFAQTLQQSRGFGSEFRF 778

>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score =  102 bits (255), Expect = 4e-22
 Identities = 58/88 (65%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE-IRAAHFEESMKYARRS 298
           TEICQRACKYAI                NP              IRAAHFEESMKYARRS
Sbjct: 691 TEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRS 750

Query: 297 VSDADIRKYQAFAQTLQQSRGFGSEFRF 214
           VSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 751 VSDADIRKYQAFAQTLQQSRGFGSEFRF 778

>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score =  100 bits (249), Expect = 2e-21
 Identities = 56/88 (63%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE-IRAAHFEESMKYARRS 298
           TEICQRACKYAI                NP              I+AAHFEESMK+ARRS
Sbjct: 692 TEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRS 751

Query: 297 VSDADIRKYQAFAQTLQQSRGFGSEFRF 214
           VSDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 752 VSDADIRKYQAFAQTLQQSRGFGSEFRF 779

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 54/87 (62%), Positives = 57/87 (65%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQR+CKYAI                +P             I+A HFEESMKYARRSV
Sbjct: 692 TEICQRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAE-IKAGHFEESMKYARRSV 750

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SDADIRKYQAFAQTLQQSRGFGSEFRF
Sbjct: 751 SDADIRKYQAFAQTLQQSRGFGSEFRF 777

>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 55/87 (63%), Positives = 57/87 (65%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACKYAI                NP             I+ AHFEESMKYARRSV
Sbjct: 692 TEICQRACKYAIRENIEKDIEREKRRQENPDSMDEDVDEVPE-IKPAHFEESMKYARRSV 750

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SDADIRKYQAFAQTLQQSRGFG+EFRF
Sbjct: 751 SDADIRKYQAFAQTLQQSRGFGTEFRF 777

>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 49/87 (56%), Positives = 53/87 (60%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACK AI                NP            EIR  HFEE+M++ARRSV
Sbjct: 687 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 746

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 747 SDNDIRKYEMFAQTLQQSRGFGS-FRF 772

>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 49/87 (56%), Positives = 53/87 (60%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACK AI                NP            EIR  HFEE+M++ARRSV
Sbjct: 687 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 746

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 747 SDNDIRKYEMFAQTLQQSRGFGS-FRF 772

>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 49/87 (56%), Positives = 53/87 (60%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACK AI                NP            EIR  HFEE+M++ARRSV
Sbjct: 687 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 746

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 747 SDNDIRKYEMFAQTLQQSRGFGS-FRF 772

>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 49/87 (56%), Positives = 53/87 (60%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACK AI                NP            EIR  HFEE+M++ARRSV
Sbjct: 687 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 746

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 747 SDNDIRKYEMFAQTLQQSRGFGS-FRF 772

>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 49/87 (56%), Positives = 52/87 (59%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAAHFEESMKYARRSV 295
           TEICQRACK AI                NP            EIR  HFEE+M+ ARRSV
Sbjct: 688 TEICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRLARRSV 747

Query: 294 SDADIRKYQAFAQTLQQSRGFGSEFRF 214
           SD DIRKY+ FAQTLQQSRGFGS FRF
Sbjct: 748 SDNDIRKYEMFAQTLQQSRGFGS-FRF 773

>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 44/91 (48%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE----IRAAHFEESMKYA 307
           TEICQRACK AI                              +    I  AHFEE+MK+A
Sbjct: 695 TEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRAHFEEAMKFA 754

Query: 306 RRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 214
           RRSV+D DIRKY+ FAQTLQQSRGFG+ F+F
Sbjct: 755 RRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF 785

>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 44/91 (48%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
 Frame = -2

Query: 474 TEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE----IRAAHFEESMKYA 307
           TEICQRACK AI                              +    I  AHFEE+MK+A
Sbjct: 693 TEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKFA 752

Query: 306 RRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 214
           RRSV+D DIRKY+ FAQTLQQSRGFG+ F+F
Sbjct: 753 RRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF 783

>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/44 (52%), Positives = 33/44 (75%)
 Frame = -2

Query: 345 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 214
           I   HF E+MK A+RSVSDA++R+Y+A++Q ++ SRG  S F F
Sbjct: 753 ITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRGQFSNFNF 796

>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -2

Query: 345 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 235
           ++  H EE+MK ARRSVSDA++R+Y+A+A  L  SRG
Sbjct: 751 VQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRG 787

>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 42)
            (Ubiquitin-specific-processing protease 42)
            (Deubiquitinating enzyme 42)
          Length = 1325

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 225  RSRIHETAAASGQRPGTCGCRRHSHYDAHTSSTPRSGQP*SLQPHQPR 368
            R+ +HE       R G  GC      + H  S+PR+G P +L PH  R
Sbjct: 1085 RAGLHERPHKDHNR-GRRGCEPARERERHRPSSPRAGAPHALAPHPDR 1131

>CX017_HUMAN (Q9NX05) Protein CXorf17 (Tumor antigen BJ-HCC-21)|
          Length = 1096

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +3

Query: 249 AASGQRPGTCGCRRHSHYDAHTSSTPRSGQP*SLQPHQPRPPPSLQG 389
           AA G   G  G  RH H+ AH        QP    P  P PPP L G
Sbjct: 70  AALGAYSGGAGPTRH-HHPAHHFHHHGQAQPGLHPPLPPPPPPQLPG 115

>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 240 ETAAASGQRPGTCGCRRHSHYDAHTSSTPRSGQ-P*SLQPHQPRPPPSL 383
           ET   S    GTC C + S   +   S    G+ P ++ P  P PPP L
Sbjct: 446 ETQTESEDCEGTCKCGQSSTKVSDNESAKEDGEKPHAVAPPPPPPPPPL 494

>VPS5_SCHPO (Q9C0U7) Vacuolar protein sorting-associated protein vps5|
          Length = 576

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 237 HETAAASGQRPGTCGCRRHSHYDAHTSSTPRSGQP*SLQPHQP 365
           H  ++AS Q+ G+       +  AH ++ P+S  P  +Q H P
Sbjct: 167 HTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTPFYIQVHDP 209

>CND1_SCHPO (O94679) Condensin complex subunit 1 (p128) (XCAP-D2 homolog)|
          Length = 1158

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 10  RHND*LCITVY*L--KNIVFPCTYQSTTSTNEKAQDKDL 120
           +H D LC  +  L  K +  P  +++TTS ++ A D+DL
Sbjct: 777 KHPDELCTNIILLLTKQLFKPSNHENTTSNDDHAMDEDL 815


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,350,552
Number of Sequences: 219361
Number of extensions: 656402
Number of successful extensions: 2034
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2023
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)