>COFE_HALMA (Q5UZQ7) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)|
          Length = 257

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 101 GLAEHAVNVVGEVAELEPDVQVRQAIA*PCDAVIVDA*VLLG 226
           G AE     + ++A+ E D ++ QAI   C+ V+V+A  +LG
Sbjct: 58  GRAERIAATIEDIADEEKDPRMAQAILDECEEVLVEAPFILG 99

>FANK1_RAT (Q66H07) Fibronectin type 3 and ankyrin repeat domains 1 protein|
          Length = 344

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 229 ITEEDSRIHNYGVAGSGDSLAHLDIGFKFRDL 134
           I EED ++HNYGV  +G +  H+  G + R L
Sbjct: 49  IEEEDPKMHNYGVIYTGYATKHVVEGLEPRTL 80

>YCXB_PORPU (P51234) Hypothetical 73.8 kDa protein in cemA-psbI intergenic|
           region (ORF621)
          Length = 621

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 199 YGVAGSGDSLAHLDIGFKFRDLTDDVHGVFGQT-YRSDYV 83
           Y V  S ++ +HLD+ F+ ++L D    +FG+  Y++ YV
Sbjct: 142 YSVERSRNNSSHLDLKFQIQELQDKELVLFGENLYKTSYV 181

>PSAC_YERPS (Q56983) Outer membrane usher protein psaC precursor|
          Length = 837

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 208 IHNYGVAGSGDSLAHLDIGFKFRDLTDDVHGVFGQT 101
           + +Y  +GSGD+   +D   + RDL + +  V GQ+
Sbjct: 470 LQSYRQSGSGDNRDKIDENSRSRDLRNQISAVIGQS 505

>PSAC_YERPE (P31527) Outer membrane usher protein psaC precursor|
          Length = 837

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 208 IHNYGVAGSGDSLAHLDIGFKFRDLTDDVHGVFGQT 101
           + +Y  +GSGD+   +D   + RDL + +  V GQ+
Sbjct: 470 LQSYRQSGSGDNRDKIDENSRSRDLRNQISAVIGQS 505

>FANK1_MOUSE (Q9DAM9) Fibronectin type 3 and ankyrin repeat domains 1 protein|
           (Germ cell-specific gene 1 protein) (GSG1)
          Length = 344

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 229 ITEEDSRIHNYGVAGSGDSLAHLDIGFKFRDL 134
           I EED ++H+YGV  +G +  H+  G + R L
Sbjct: 49  IEEEDPKMHSYGVIYTGYATRHVVEGLEPRTL 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,618,794
Number of Sequences: 219361
Number of extensions: 502427
Number of successful extensions: 1380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)