ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart27f05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189425.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 192 bits (97), Expect = 4e-46 Identities = 210/247 (85%), Gaps = 3/247 (1%) Strand = Plus / Minus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| ||||||||||| |||||| ||||||||||||| || Sbjct: 878 aagatgtcggaggcgacgtagctcggcgcgccgtccatgaccggcatgctggcgctgacg 819 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 818 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccgtggacgtcgtcg 759 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||||||| ||||| || ||||| || | | | | | Sbjct: 758 gagaggtcgtagaacttgaagccgatgtcgaggtgagcgaggctgtcctc---ctcggtg 702 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 701 acgccatagttgtggatgcgggagtcctgctcggtgatgggcaccacgttggccatgatg 642 Query: 252 tcgaaca 258 ||||||| Sbjct: 641 tcgaaca 635
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 192 bits (97), Expect = 4e-46 Identities = 210/247 (85%), Gaps = 3/247 (1%) Strand = Plus / Plus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| ||||||||||| |||||| ||||||||||||| || Sbjct: 42696713 aagatgtcggaggcgacgtagctcggcgcgccgtccatgaccggcatgctggcgctgacg 42696772 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 42696773 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccgtggacgtcgtcg 42696832 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||||||| ||||| || ||||| || | | | | | Sbjct: 42696833 gagaggtcgtagaacttgaagccgatgtcgaggtgagcgaggctgtcctc---ctcggtg 42696889 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 42696890 acgccatagttgtggatgcgggagtcctgctcggtgatgggcaccacgttggccatgatg 42696949 Query: 252 tcgaaca 258 ||||||| Sbjct: 42696950 tcgaaca 42696956 Score = 161 bits (81), Expect = 1e-36 Identities = 206/247 (83%), Gaps = 3/247 (1%) Strand = Plus / Minus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| | || ||||||||||||| ||||||||||||| || Sbjct: 42700059 aagatgtcggaggcgacgtagcttggtgcgccgcccatgaccggcatgctggcgctgacg 42700000 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| |||||| || ||||||||| Sbjct: 42699999 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcg 42699940 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||| ||| ||||| || ||||| || | | | | | Sbjct: 42699939 gagaggtcgtagaacttgaagccgaggtcgaggtgagcgaggctgtcctc---ctcggtg 42699883 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||||||| Sbjct: 42699882 acgccatagttgtggatgcgcgagtcatgctcggtgatgggcaccacgttggccatgatg 42699823 Query: 252 tcgaaca 258 ||||||| Sbjct: 42699822 tcgaaca 42699816 Score = 131 bits (66), Expect = 1e-27 Identities = 146/172 (84%), Gaps = 3/172 (1%) Strand = Plus / Plus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcgg 143 ||||| |||||||||||||||||||||| ||||| || || ||||||| ||||||| | Sbjct: 42692684 acgtagtcggagcggtaggtctggccgaggacgccatggacatcgtcggagaggtcgtag 42692743 Query: 144 aacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcgacgccgtaattg 203 |||||||| |||| ||| ||||| || ||||| || | | | | ||||||||| ||| Sbjct: 42692744 aacttgaagccgaggtcgaggtgggcgaggctgtcctc---ctcggtgacgccgtagttg 42692800 Query: 204 tggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatgtcga 255 |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 42692801 tggatgcgggagtcctgctcggtgatgggcaccacgttggccatgatgtcga 42692852 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gcgccgcccatgatgggcat 58 |||||||||||||||||||| Sbjct: 42704184 gcgccgcccatgatgggcat 42704165
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1656_A11 Length = 148887 Score = 192 bits (97), Expect = 4e-46 Identities = 210/247 (85%), Gaps = 3/247 (1%) Strand = Plus / Plus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| ||||||||||| |||||| ||||||||||||| || Sbjct: 29478 aagatgtcggaggcgacgtagctcggcgcgccgtccatgaccggcatgctggcgctgacg 29537 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 29538 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccgtggacgtcgtcg 29597 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||||||| ||||| || ||||| || | | | | | Sbjct: 29598 gagaggtcgtagaacttgaagccgatgtcgaggtgagcgaggctgtcctc---ctcggtg 29654 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 29655 acgccatagttgtggatgcgggagtcctgctcggtgatgggcaccacgttggccatgatg 29714 Query: 252 tcgaaca 258 ||||||| Sbjct: 29715 tcgaaca 29721 Score = 161 bits (81), Expect = 1e-36 Identities = 206/247 (83%), Gaps = 3/247 (1%) Strand = Plus / Minus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| | || ||||||||||||| ||||||||||||| || Sbjct: 32824 aagatgtcggaggcgacgtagcttggtgcgccgcccatgaccggcatgctggcgctgacg 32765 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| |||||| || ||||||||| Sbjct: 32764 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcg 32705 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||| ||| ||||| || ||||| || | | | | | Sbjct: 32704 gagaggtcgtagaacttgaagccgaggtcgaggtgagcgaggctgtcctc---ctcggtg 32648 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||||||| Sbjct: 32647 acgccatagttgtggatgcgcgagtcatgctcggtgatgggcaccacgttggccatgatg 32588 Query: 252 tcgaaca 258 ||||||| Sbjct: 32587 tcgaaca 32581 Score = 131 bits (66), Expect = 1e-27 Identities = 146/172 (84%), Gaps = 3/172 (1%) Strand = Plus / Plus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcgg 143 ||||| |||||||||||||||||||||| ||||| || || ||||||| ||||||| | Sbjct: 25449 acgtagtcggagcggtaggtctggccgaggacgccatggacatcgtcggagaggtcgtag 25508 Query: 144 aacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcgacgccgtaattg 203 |||||||| |||| ||| ||||| || ||||| || | | | | ||||||||| ||| Sbjct: 25509 aacttgaagccgaggtcgaggtgggcgaggctgtcctc---ctcggtgacgccgtagttg 25565 Query: 204 tggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatgtcga 255 |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 25566 tggatgcgggagtcctgctcggtgatgggcaccacgttggccatgatgtcga 25617 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gcgccgcccatgatgggcat 58 |||||||||||||||||||| Sbjct: 36949 gcgccgcccatgatgggcat 36930
>ref|NM_189426.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 993 Score = 161 bits (81), Expect = 1e-36 Identities = 206/247 (83%), Gaps = 3/247 (1%) Strand = Plus / Minus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| | || ||||||||||||| ||||||||||||| || Sbjct: 920 aagatgtcggaggcgacgtagcttggtgcgccgcccatgaccggcatgctggcgctgacg 861 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| |||||| || ||||||||| Sbjct: 860 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcg 801 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||| ||| ||||| || ||||| || | | | | | Sbjct: 800 gagaggtcgtagaacttgaagccgaggtcgaggtgagcgaggctgtcctc---ctcggtg 744 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||||||| Sbjct: 743 acgccatagttgtggatgcgcgagtcatgctcggtgatgggcaccacgttggccatgatg 684 Query: 252 tcgaaca 258 ||||||| Sbjct: 683 tcgaaca 677
>dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full insert sequence Length = 1352 Score = 161 bits (81), Expect = 1e-36 Identities = 206/247 (83%), Gaps = 3/247 (1%) Strand = Plus / Minus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatgctggcgcgcaca 71 ||||||||||||| ||| ||| | || ||||||||||||| ||||||||||||| || Sbjct: 1072 aagatgtcggaggcgacgtagcttggtgcgccgcccatgaccggcatgctggcgctgacg 1013 Query: 72 ctcatcccgttcacgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcg 131 || | | ||| ||||| |||||||||||||||||||||| |||||| || ||||||||| Sbjct: 1012 ctgagcttgttgacgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcg 953 Query: 132 gtgaggtcgcggaacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcg 191 | ||||||| ||||||||| |||| ||| ||||| || ||||| || | | | | | Sbjct: 952 gagaggtcgtagaacttgaagccgaggtcgaggtgagcgaggctgtcctc---ctcggtg 896 Query: 192 acgccgtaattgtggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatg 251 ||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||||||| Sbjct: 895 acgccatagttgtggatgcgcgagtcatgctcggtgatgggcaccacgttggccatgatg 836 Query: 252 tcgaaca 258 ||||||| Sbjct: 835 tcgaaca 829
>ref|NM_189423.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 131 bits (66), Expect = 1e-27 Identities = 146/172 (84%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcgg 143 ||||| |||||||||||||||||||||| ||||| || || ||||||| ||||||| | Sbjct: 830 acgtagtcggagcggtaggtctggccgaggacgccatggacatcgtcggagaggtcgtag 771 Query: 144 aacttgaacccgatgtccaggtgcgccaggctatcgcctgaccctgcgacgccgtaattg 203 |||||||| |||| ||| ||||| || ||||| || | | | | ||||||||| ||| Sbjct: 770 aacttgaagccgaggtcgaggtgggcgaggctgtcctc---ctcggtgacgccgtagttg 714 Query: 204 tggatgcgtgagtcctcctcggtgatgggcaccacgttggccatgatgtcga 255 |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 713 tggatgcgggagtcctgctcggtgatgggcaccacgttggccatgatgtcga 662
>dbj|AB021175.1| Zea mays ZmRCP1 mRNA for root cap protein 1, complete cds Length = 1225 Score = 91.7 bits (46), Expect = 1e-15 Identities = 128/153 (83%), Gaps = 3/153 (1%) Strand = Plus / Minus Query: 95 gcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcggaacttgaaccc 154 ||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||| || Sbjct: 885 gcggtaggtctggcccagcacgccgtgcacgtcgtcggtgaggtcgtagaacttgaagcc 826 Query: 155 gatgtccaggtgcgccaggctatcgcc-tgaccctgc--gacgccgtaattgtggatgcg 211 || ||| |||||||| ||| | ||||| | ||| | ||||||||| |||||||| || Sbjct: 825 gaggtcgaggtgcgcgagggtgtcgccgtcgtcctccctgacgccgtagttgtggatccg 766 Query: 212 tgagtcctcctcggtgatgggcaccacgttggc 244 |||||||| ||||||||||||| ||| |||| Sbjct: 765 cgagtcctcggcggtgatgggcactacgctggc 733 Score = 48.1 bits (24), Expect = 0.014 Identities = 42/48 (87%) Strand = Plus / Minus Query: 12 aagatgtcggaggagacatagttcggcgcgccgcccatgatgggcatg 59 |||| ||||||||||| |||| ||||||||| ||||||| ||||||| Sbjct: 968 aagaggtcggaggagaggtagtccggcgcgcctcccatgacgggcatg 921
>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0068N01, complete sequence Length = 152233 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| |||||||||||||||||||||| |||||| || |||||||||||||| Sbjct: 40593 acgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcggtgag 40541
>gb|AF532975.1| Oryza sativa (indica cultivar-group) IR24 chromosome 5 BAC, complete sequence Length = 86190 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| |||||||||||||||||||||| |||||| || |||||||||||||| Sbjct: 41111 acgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcggtgag 41059
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| |||||||||||||||||||||| |||||| || |||||||||||||| Sbjct: 378946 acgtagtcggagcggtaggtctggccgagcacgccatggacgtcgtcggtgag 378894 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 213 gagtcctcctcggtgatgggcaccacgtt 241 |||||||||| |||||||||||||||||| Sbjct: 27263258 gagtcctccttggtgatgggcaccacgtt 27263230 Score = 46.1 bits (23), Expect = 0.054 Identities = 44/51 (86%) Strand = Plus / Minus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcggaacttgaac 152 |||||||| | |||||| || ||||||||||||||| || |||||||||| Sbjct: 27263366 gtctggcccagcacgccatggacgtcgtcggtgagggcgtagaacttgaac 27263316
>gb|AF134579.1|AF134579 Zea mays clone AGPZm1 arabinogalactan protein (agp) mRNA, partial cds Length = 825 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcgg 143 ||||| ||||||||||| |||||||||| ||||||||| |||||| ||||||| ||| | Sbjct: 564 acgtagtcggagcggtacgtctggccgaccacgccgtgcacgtcggcggtgagcgcgccg 505 Query: 144 aacttgaa 151 |||||||| Sbjct: 504 aacttgaa 497 Score = 40.1 bits (20), Expect = 3.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 216 tcctcctcggtgatgggcaccacgttggccatgatg 251 |||||||| ||||||||||| |||||||| ||||| Sbjct: 435 tcctcctctgtgatgggcacggcgttggccctgatg 400
>gb|AY111354.1| Zea mays CL1277_1 mRNA sequence Length = 1328 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcgg 143 ||||| ||||||||||| |||||||||| ||||||||| |||||| ||||||| ||| | Sbjct: 914 acgtagtcggagcggtacgtctggccgaccacgccgtgcacgtcggcggtgagcgcgccg 855 Query: 144 aacttgaa 151 |||||||| Sbjct: 854 aacttgaa 847 Score = 48.1 bits (24), Expect = 0.014 Identities = 33/36 (91%) Strand = Plus / Minus Query: 216 tcctcctcggtgatgggcaccacgttggccatgatg 251 |||||||||||||||||||| |||||||| ||||| Sbjct: 785 tcctcctcggtgatgggcacggcgttggccctgatg 750
>dbj|AB021176.1| Zea mays ZmRCP2 mRNA for root cap protein 2, complete cds Length = 1318 Score = 71.9 bits (36), Expect = 9e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcgg 143 ||||| ||||||||||| |||||||||| ||||||||| |||||| ||||||| ||| | Sbjct: 914 acgtagtcggagcggtacgtctggccgaccacgccgtgcacgtcggcggtgagcgcgccg 855 Query: 144 aacttgaa 151 |||||||| Sbjct: 854 aacttgaa 847 Score = 48.1 bits (24), Expect = 0.014 Identities = 33/36 (91%) Strand = Plus / Minus Query: 216 tcctcctcggtgatgggcaccacgttggccatgatg 251 |||||||||||||||||||| |||||||| ||||| Sbjct: 785 tcctcctcggtgatgggcacggcgttggccctgatg 750
>ref|XM_472395.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1068 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcg 128 ||||| |||| ||||||||||||||| | ||||||||| |||||| Sbjct: 857 acgtagtcggggcggtaggtctggcccagcacgccgtgcacgtcg 813 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 213 gagtcctcctcggtgatgggcaccacgttggc 244 ||||||||||| |||| ||||||| ||||||| Sbjct: 731 gagtcctcctccgtgacgggcaccgcgttggc 700
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 50.1 bits (25), Expect = 0.003 Identities = 46/53 (86%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| ||||||||||| ||||| |||| |||||||| |||||| ||||||| Sbjct: 139035 acgtagtcggagcggtacgtctgaccgacgacgccgtgcacgtcgccggtgag 138983
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 50.1 bits (25), Expect = 0.003 Identities = 46/53 (86%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| ||||||||||| ||||| |||| |||||||| |||||| ||||||| Sbjct: 15178 acgtagtcggagcggtacgtctgaccgacgacgccgtgcacgtcgccggtgag 15126
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 213 gagtcctcctcggtgatgggcaccacgtt 241 |||||||||| |||||||||||||||||| Sbjct: 138226 gagtcctccttggtgatgggcaccacgtt 138198 Score = 46.1 bits (23), Expect = 0.054 Identities = 44/51 (86%) Strand = Plus / Minus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgaggtcgcggaacttgaac 152 |||||||| | |||||| || ||||||||||||||| || |||||||||| Sbjct: 138334 gtctggcccagcacgccatggacgtcgtcggtgagggcgtagaacttgaac 138284
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcg 128 ||||| |||| ||||||||||||||| | ||||||||| |||||| Sbjct: 21064 acgtagtcggggcggtaggtctggcccagcacgccgtgcacgtcg 21020 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 213 gagtcctcctcggtgatgggcaccacgttggc 244 ||||||||||| |||| ||||||| ||||||| Sbjct: 20938 gagtcctcctccgtgacgggcaccgcgttggc 20907
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcg 128 ||||| |||| ||||||||||||||| | ||||||||| |||||| Sbjct: 20290431 acgtagtcggggcggtaggtctggcccagcacgccgtgcacgtcg 20290387 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 213 gagtcctcctcggtgatgggcaccacgttggc 244 ||||||||||| |||| ||||||| ||||||| Sbjct: 20290305 gagtcctcctccgtgacgggcaccgcgttggc 20290274
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.003 Identities = 46/53 (86%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| ||||||||||| ||||| |||| |||||||| |||||| ||||||| Sbjct: 2363036 acgtagtcggagcggtacgtctgaccgacgacgccgtgcacgtcgccggtgag 2362984
>dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E01, full insert sequence Length = 1481 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcg 128 ||||| |||| ||||||||||||||| | ||||||||| |||||| Sbjct: 942 acgtagtcggggcggtaggtctggcccagcacgccgtgcacgtcg 898 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 213 gagtcctcctcggtgatgggcaccacgttggc 244 ||||||||||| |||| ||||||| ||||||| Sbjct: 816 gagtcctcctccgtgacgggcaccgcgttggc 785
>dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E12, full insert sequence Length = 1747 Score = 50.1 bits (25), Expect = 0.003 Identities = 46/53 (86%) Strand = Plus / Plus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| ||||||||||| ||||| |||| |||||||| |||||| ||||||| Sbjct: 1025 acgtagtcggagcggtacgtctgaccgacgacgccgtgcacgtcgccggtgag 1077
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.003 Identities = 46/53 (86%) Strand = Plus / Minus Query: 84 acgtaatcggagcggtaggtctggccgaacacgccgtgaacgtcgtcggtgag 136 ||||| ||||||||||| ||||| |||| |||||||| |||||| ||||||| Sbjct: 2370817 acgtagtcggagcggtacgtctgaccgacgacgccgtgcacgtcgccggtgag 2370765
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence Length = 187707 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Plus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 159676 gtctggccgagcacgccatggacgtcgtcggtgag 159710
>dbj|AB108421.1| Oryza sativa (japonica cultivar-group) transposon, AnacB14, complete sequence Length = 7551 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Minus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 5447 gtctggccgagcacgccatggacgtcgtcggtgag 5413
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Plus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 22154732 gtctggccgagcacgccatggacgtcgtcggtgag 22154766
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Minus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 28348639 gtctggccgagcacgccatggacgtcgtcggtgag 28348605
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Minus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 61217 gtctggccgagcacgccatggacgtcgtcggtgag 61183
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Minus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 146668 gtctggccgagcacgccatggacgtcgtcggtgag 146634
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.054 Identities = 32/35 (91%) Strand = Plus / Plus Query: 102 gtctggccgaacacgccgtgaacgtcgtcggtgag 136 |||||||||| |||||| || |||||||||||||| Sbjct: 22166795 gtctggccgagcacgccatggacgtcgtcggtgag 22166829
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 tgatgggcaccacgttggccatgatg 251 |||||||||| ||||||||||||||| Sbjct: 13320119 tgatgggcacgacgttggccatgatg 13320144
>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_B01 Length = 105736 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 tgatgggcaccacgttggccatgatg 251 |||||||||| ||||||||||||||| Sbjct: 34557 tgatgggcacgacgttggccatgatg 34582
>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0025D09 Length = 142593 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 tgatgggcaccacgttggccatgatg 251 |||||||||| ||||||||||||||| Sbjct: 107982 tgatgggcacgacgttggccatgatg 108007
>emb|BX510925.7| Zebrafish DNA sequence from clone CH211-278B8 in linkage group 5, complete sequence Length = 75254 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 aaacaaagatgtcggaggaga 27 ||||||||||||||||||||| Sbjct: 35587 aaacaaagatgtcggaggaga 35607
>ref|XM_306467.2| Anopheles gambiae str. PEST ENSANGP00000024083 (ENSANGG00000020461), partial mRNA Length = 1209 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 ctcctcggtgatgggcaccac 238 ||||||||||||||||||||| Sbjct: 153 ctcctcggtgatgggcaccac 133
>ref|NM_189428.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gcgccgcccatgatgggcat 58 |||||||||||||||||||| Sbjct: 920 gcgccgcccatgatgggcat 901
>ref|XM_447833.1| Candida glabrata CBS138, CAGL0J02970g partial mRNA Length = 1347 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gaaacaaagatgtcggagga 25 |||||||||||||||||||| Sbjct: 319 gaaacaaagatgtcggagga 338
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gaaacaaagatgtcggagga 25 |||||||||||||||||||| Sbjct: 285398 gaaacaaagatgtcggagga 285379
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgtcgtcggtgaggtcgcgg 143 |||||||||||||||||||| Sbjct: 1496353 cgtcgtcggtgaggtcgcgg 1496372 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,347,785 Number of Sequences: 3902068 Number of extensions: 1347785 Number of successful extensions: 35336 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35050 Number of HSP's gapped (non-prelim): 279 length of query: 258 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 236 effective length of database: 17,147,199,772 effective search space: 4046739146192 effective search space used: 4046739146192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
