ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27e12 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/71 (35%), Positives = 41/71 (57%) Frame = -3 Query: 485 YLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAG 306 YLR+Q + L+G+ +DD S+AN+ LV++G++LL + VS + ET Sbjct: 316 YLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPETYEEA---------- 365 Query: 305 ELAKYARQLSD 273 L ++A+ LSD Sbjct: 366 -LKRFAKLLSD 375
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 42.7 bits (99), Expect = 5e-04 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = -3 Query: 485 YLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAG 306 YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS ET Sbjct: 316 YLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPETYEEA---------- 365 Query: 305 ELAKYARQLSD 273 L ++A+ LSD Sbjct: 366 -LKRFAKLLSD 375
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 42.7 bits (99), Expect = 5e-04 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = -3 Query: 485 YLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAG 306 YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS ET Sbjct: 316 YLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPETYEEA---------- 365 Query: 305 ELAKYARQLSD 273 L ++A+ LSD Sbjct: 366 -LKRFAKLLSD 375
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 42.7 bits (99), Expect = 5e-04 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = -3 Query: 485 YLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAG 306 YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS ET Sbjct: 316 YLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPETYEEA---------- 365 Query: 305 ELAKYARQLSD 273 L ++A+ LSD Sbjct: 366 -LKRFAKLLSD 375
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 42.4 bits (98), Expect = 7e-04 Identities = 20/46 (43%), Positives = 32/46 (69%) Frame = -3 Query: 485 YLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLET 348 YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS ET Sbjct: 307 YLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 352
>APEA_CLOAB (Q97K30) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)| Length = 465 Score = 34.3 bits (77), Expect = 0.18 Identities = 24/68 (35%), Positives = 37/68 (54%) Frame = -3 Query: 476 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAGELA 297 I ++K +GS G C+ AN + + ++ L E V+ E G+ V+ GGGT A LA Sbjct: 367 IVFNKYTGSRGK-SGCNDANPEYIAELRRILSKESVNWQTAELGK-VDQGGGGTIAYILA 424 Query: 296 KYARQLSD 273 +Y Q+ D Sbjct: 425 EYGMQVID 432
>ARGC1_PSEPK (Q88QQ6) N-acetyl-gamma-glutamyl-phosphate reductase 1 (EC| 1.2.1.38) (AGPR 1) (N-acetyl-glutamate semialdehyde dehydrogenase 1) (NAGSA dehydrogenase 1) Length = 344 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 267 ALIGELPCVLGELPRVCASTGHLHIP---AGLQVHPGHLLGEKLIPNL 401 A +G L C GE + A GH H+P GL++ G +G +P+L Sbjct: 188 AAVGSLFCEAGESMKAYAVKGHRHLPEISQGLRLAAGKDIGLTFVPHL 235
>GPMA_RALEJ (Q476J7) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 248 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = -3 Query: 440 IDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAGELAKYARQLSDE 270 + +C K + R++ + +E +A D+++G+ V + G + L KY Q+SD+ Sbjct: 148 LTECLKDTVARVLPLWNESIAP-----DIQSGKRVVIAAHGNSIRALVKYLDQISDD 199
>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin) Length = 1004 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Frame = +1 Query: 271 SSESCLAYLASSPAFVPPPGT------STFRPVSRSTPDTFSARSSSPI 399 S E+ L Y+A + A PP T + RP+SR PD S + S I Sbjct: 185 SPENILTYVAHTSALTYPPATRVKYPDNLLRPLSRLQPDELSPKVDSDI 233
>RECG_HELPY (O26051) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 623 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -3 Query: 413 DRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAGELAKYARQLSDE 270 +RL K DEL K++ +DLE ++ ++ GG +G +Y DE Sbjct: 553 ERLEKFADELDGFKIAELDLEYRKSGDLLQGGEQSGNSFEYIDLAKDE 600
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Frame = +1 Query: 325 PGTSTFRPVSRSTPDTFSARSSSPI--------FTNLSKLALEQSSMEPALPLS 462 PGT+T P RST T +A S +PI +T LS+ ++M A P S Sbjct: 2488 PGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSS 2541
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 30.0 bits (66), Expect = 3.5 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +1 Query: 280 SCLAYLASSPAFV---PPPGTSTFRPVSRSTPDTFSARSSSPIFTNLSKLALE 429 S L+ +SPA P PG+ R RSTP T S R ++P L K LE Sbjct: 186 STLSLARASPALTRSSPAPGSGYSRSGGRSTPSTQSQRRAAPGEGGLLKDVLE 238
>PPDK_TREPA (O83728) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,| orthophosphate dikinase) Length = 901 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 383 LAEKVSGVDLETGRNVEVPGGGTNAGELAKYARQLS 276 LA K VD + G +E+P +A E+A+YA+ S Sbjct: 734 LALKAKEVDYKVGAMIELPAAALSADEIARYAQFFS 769
>SYFA_PSEAE (Q9I0A3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 29.6 bits (65), Expect = 4.5 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +3 Query: 279 ELPCVL--GELPRVCASTGHLHIPAGLQVHPGHLLGEKLIPNLHQPIQVGLGA 431 ++ CV+ G RVC TG L + VHP L + P Q G+GA Sbjct: 258 DIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGA 310
>GPMA2_LACPL (Q88T35) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (PGAM 2) (BPG-dependent PGAM 2) (dPGM 2) Length = 230 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -3 Query: 425 KANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAGELAKYARQLSDE 270 K L+R++ ++ +A K L G+NV + G + L+KY Q+SD+ Sbjct: 153 KVTLERVMPFWEDQIAPK-----LLDGKNVIIAAHGNSLRALSKYIEQISDD 199
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +1 Query: 271 SSESCLAYLASSPAFVPPPGTSTFRPVSRSTPDTFSARSSSPIFTNLSKLALEQS 435 SS S + +SS +F+ +STF TP + S+ +SS + ++ + LAL S Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS 280
>THSB_DESMO (Q9V2T3) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin| beta subunit) (Fragment) Length = 502 Score = 29.3 bits (64), Expect = 5.9 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -3 Query: 443 SIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAGELAKYARQLS 276 S+ + L+RLV + + + +S V +PGGG ELAK+ R+L+ Sbjct: 355 SVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLA 410
>SYFA_PSEF5 (Q4KEW0) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +3 Query: 279 ELPCVL--GELPRVCASTGHLHIPAGLQVHPGHLLGEKLIPNLHQPIQVGLGA 431 ++ CV+ G+ RVC TG L + VHP L + P Q G+GA Sbjct: 258 DMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMGA 310
>FPRP_HUMAN (Q9P2B2) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD9 partner 1) (CD9P-1) (CD315 antigen) Length = 879 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Frame = -2 Query: 210 LMYVFKLILTFGLGAQSV-----CLI*LCRAYCCCNSLVQES 100 ++ FK L G+G +V CLI C ++ CC VQE+ Sbjct: 825 VLNAFKYPLLIGVGLSTVIGLLSCLIGYCSSHWCCKKEVQET 866
>GPMA_CHLCH (Q3AU60) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 247 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/68 (25%), Positives = 32/68 (47%) Frame = -3 Query: 473 QYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAGELAK 294 +Y LS + + +C K + R + + E +A ++ GRNV + G + L K Sbjct: 137 RYASLSEAEVPLTECLKDTVARFLPLWHETIAPEI-----RKGRNVIIAAHGNSIRALVK 191 Query: 293 YARQLSDE 270 Y +S++ Sbjct: 192 YLDNVSED 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,248,040 Number of Sequences: 219361 Number of extensions: 1313118 Number of successful extensions: 4592 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4354 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4587 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
