Clone Name | rbart27e12 |
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Clone Library Name | barley_pub |
>ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 79.8 bits (40), Expect = 8e-12 Identities = 157/196 (80%) Strand = Plus / Minus Query: 257 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcccccgcgtttg 316 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| | ||| | Sbjct: 1198 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 1139 Query: 317 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 376 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 1138 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 1079 Query: 377 cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 436 | |||||||| |||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 1078 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 1019 Query: 437 cgatggagcccgcact 452 |||| ||||||||||| Sbjct: 1018 cgatcgagcccgcact 1003
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 8e-12 Identities = 157/196 (80%) Strand = Plus / Plus Query: 257 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcccccgcgtttg 316 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| | ||| | Sbjct: 23538537 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 23538596 Query: 317 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 376 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 23538597 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 23538656 Query: 377 cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 436 | |||||||| |||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 23538657 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 23538716 Query: 437 cgatggagcccgcact 452 |||| ||||||||||| Sbjct: 23538717 cgatcgagcccgcact 23538732 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 ctcatccccaatcttcaccaa 407 ||||||||||||||||||||| Sbjct: 26302374 ctcatccccaatcttcaccaa 26302394
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 79.8 bits (40), Expect = 8e-12 Identities = 157/196 (80%) Strand = Plus / Plus Query: 257 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcccccgcgtttg 316 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| | ||| | Sbjct: 18312 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 18371 Query: 317 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 376 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 18372 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 18431 Query: 377 cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 436 | |||||||| |||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 18432 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 18491 Query: 437 cgatggagcccgcact 452 |||| ||||||||||| Sbjct: 18492 cgatcgagcccgcact 18507
>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence Length = 163910 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 aagcacatattatatgtgcta 95 ||||||||||||||||||||| Sbjct: 98064 aagcacatattatatgtgcta 98084
>emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chromosome X Contains the 3' end of the gene for a novel protein (FLJ31204), complete sequence Length = 106636 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 tataaagcacatattatatgt 91 ||||||||||||||||||||| Sbjct: 54287 tataaagcacatattatatgt 54307
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ttacggcgtcggcggcgctca 273 ||||||||||||||||||||| Sbjct: 4049712 ttacggcgtcggcggcgctca 4049692
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 ggccggtctccaggtccaccc 364 ||||||||||||||||||||| Sbjct: 1129003 ggccggtctccaggtccaccc 1129023
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 ctcatccccaatcttcaccaa 407 ||||||||||||||||||||| Sbjct: 31955 ctcatccccaatcttcaccaa 31975
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 ggccggtctccaggtccaccc 364 ||||||||||||||||||||| Sbjct: 802362 ggccggtctccaggtccaccc 802382
>gb|AC152976.1| Mus musculus BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194151 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 catataaagcacatattata 88 |||||||||||||||||||| Sbjct: 70465 catataaagcacatattata 70446
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 cggcgtcggcggcgctcatc 275 |||||||||||||||||||| Sbjct: 113747 cggcgtcggcggcgctcatc 113766
>gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, complete sequence Length = 257790 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 catataaagcacatattata 88 |||||||||||||||||||| Sbjct: 255591 catataaagcacatattata 255610
>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence Length = 186488 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 catataaagcacatattata 88 |||||||||||||||||||| Sbjct: 152716 catataaagcacatattata 152697
>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence Length = 203891 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 taatgactcttgcacaagac 116 |||||||||||||||||||| Sbjct: 129318 taatgactcttgcacaagac 129337
>ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000210.02.0) partial mRNA Length = 888 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cacatattatatgtgctaat 97 |||||||||||||||||||| Sbjct: 274 cacatattatatgtgctaat 255
>emb|BX016260.1|CNS08KPK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA24BE12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 974 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 gcacctccacattccggccggtct 352 ||||||||||||||| |||||||| Sbjct: 310 gcacctccacattcccgccggtct 287
>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20 Contains the gene for a novel protein (zgc:63952), the 3' end of the gene for a novel protein similar to mouse and human importin 4 (IPO4), three genes for transposase, a novel gene and six CpG islands, complete sequence Length = 190000 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 caattgctagtttggtttgaggca 243 |||||||| ||||||||||||||| Sbjct: 60892 caattgctggtttggtttgaggca 60869
>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence Length = 180854 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ttgaacacatacattaaact 213 |||||||||||||||||||| Sbjct: 37889 ttgaacacatacattaaact 37870
>gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, complete sequence Length = 73460 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ttgaacacatacattaaact 213 |||||||||||||||||||| Sbjct: 50721 ttgaacacatacattaaact 50702
>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence Length = 160046 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ttgaacacatacattaaact 213 |||||||||||||||||||| Sbjct: 151905 ttgaacacatacattaaact 151886
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 322 ccaccgggcacctccacattccggccgg 349 |||||||||| ||| ||||||||||||| Sbjct: 3069891 ccaccgggcagctcgacattccggccgg 3069864
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 caccttctcggcgagaagct 388 |||||||||||||||||||| Sbjct: 1880735 caccttctcggcgagaagct 1880754
>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence Length = 193317 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ataattaaatcaaacaaaca 160 |||||||||||||||||||| Sbjct: 124975 ataattaaatcaaacaaaca 124994
>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20, complete sequence Length = 73842 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tataaagcacatattatatg 90 |||||||||||||||||||| Sbjct: 27565 tataaagcacatattatatg 27584
>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20, complete sequence Length = 163967 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ttttcatgtcatataaagca 79 |||||||||||||||||||| Sbjct: 59860 ttttcatgtcatataaagca 59879
>dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1182F3, complete sequence Length = 151887 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ttgaacacatacattaaact 213 |||||||||||||||||||| Sbjct: 81263 ttgaacacatacattaaact 81244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,071,711 Number of Sequences: 3902068 Number of extensions: 4071711 Number of successful extensions: 86519 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86198 Number of HSP's gapped (non-prelim): 318 length of query: 490 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 468 effective length of database: 17,147,199,772 effective search space: 8024889493296 effective search space used: 8024889493296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)