ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009424.1| Triticum aestivum clone wlmk1.pk0020.a9:fis, full... 577 e-161
2dbj|AK071149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
3gb|BT017043.1| Zea mays clone EL01N0203A06.c mRNA sequence 149 9e-33
4gb|AY108945.1| Zea mays PCO115123 mRNA sequence 149 9e-33
5gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 100 7e-18
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
8gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.5
9ref|XM_526452.1| PREDICTED: Pan troglodytes similar to endoglyca... 42 1.5
10gb|BC052585.1| Homo sapiens podocalyxin-like 2, mRNA (cDNA clone... 42 1.5
11gb|BC019330.1| Homo sapiens podocalyxin-like 2, mRNA (cDNA clone... 42 1.5
12gb|AC114676.7| Mus musculus chromosome 5, clone RP24-211H1, comp... 42 1.5
13ref|XM_382844.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 1.5
14gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome... 42 1.5
15gb|AY359096.1| Homo sapiens clone DNA92243 podocalyxin-like prot... 42 1.5
16gb|BC096743.1| Mus musculus ubiquitin protein ligase E3B, mRNA (... 42 1.5
17gb|BC023956.1| Mus musculus ubiquitin protein ligase E3B, mRNA (... 42 1.5
18gb|BC034059.1| Mus musculus ubiquitin protein ligase E3B, mRNA (... 42 1.5
19gb|AF244362.3| Mus musculus ubiquitin-protein ligase UBE3B (Ube3... 42 1.5
20emb|CR604786.1| full-length cDNA clone CS0DF035YH05 of Fetal bra... 42 1.5
21emb|CR596999.1| full-length cDNA clone CS0DF002YI19 of Fetal bra... 42 1.5
22ref|NM_015720.1| Homo sapiens podocalyxin-like 2 (PODXL2), mRNA 42 1.5
23gb|BC026415.1| Mus musculus ubiquitin protein ligase E3B, mRNA (... 42 1.5
24dbj|AK088518.1| Mus musculus 2 days neonate thymus thymic cells ... 42 1.5
25ref|NM_054093.2| Mus musculus ubiquitin protein ligase E3B (Ube3... 42 1.5
26dbj|AK182992.1| Mus musculus cDNA, clone:Y0G0124G04, strand:unsp... 42 1.5
27gb|AF219137.1|AF219137 Homo sapiens endoglycan mRNA, complete cds 42 1.5
28gb|AC023593.14| Homo sapiens 3 BAC RP11-427I6 (Roswell Park Canc... 42 1.5
29gb|AC146800.3| Xenopus tropicalis clone CH216-56E14, complete se... 40 6.0
30ref|XM_947851.1| Theileria annulata strain Ankara hypothetical p... 40 6.0
31emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 ... 40 6.0
32gb|AC159196.2| Mus musculus BAC clone RP23-430O17 from chromosom... 40 6.0 
>gb|BT009424.1| Triticum aestivum clone wlmk1.pk0020.a9:fis, full insert mRNA
           sequence
          Length = 1003

 Score =  577 bits (291), Expect = e-161
 Identities = 370/396 (93%), Gaps = 14/396 (3%)
 Strand = Plus / Minus

                                                                       
Query: 52  cttgcatggtcaataaaacgagcaatatatcgacatgtcattacatccaccatgtttgca 111
           |||||||||| |||||||||||||||||||| | |||||||||||||| ||| |||||||
Sbjct: 982 cttgcatggtaaataaaacgagcaatatatcca-atgtcattacatccgccacgtttgca 924

                                                                       
Query: 112 aaatatgcatagcgttcacgtagaactacacgaaaattagcccttaattacttattggtg 171
           |||||||||||         ||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 923 aaatatgcata---------tagaactacacaaaaagtagccctcaattacttattggtg 873

                                                                       
Query: 172 gggccatcgtacattctttcattctacttgac----gaaataagttattcagcttgcatc 227
           |||||||| ||||||||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 872 gggccatcttacattctttcattctacttgaaaagagaaataagttattcagcttgcatc 813

                                                                       
Query: 228 tcccaatgcttcgatgaactgatccttgaggtggccatttgatccggccattctttgcgc 287
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 812 tcccaatgctttgatgaactgatccttgaggtggccatttgatcctgccattctttgcgc 753

                                                                       
Query: 288 catcagatcaaactcatcaccgctcggatcaaaaacaaaaccccctgcttcctttagaat 347
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 752 catcagatcaaactcatcaccgctcggatcaaaaacaaaacccccagcttcctttagaat 693

                                                                       
Query: 348 caaagctccagcagccacatcccaggggccaccaaaaccgatctcataacacaaatctag 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caaagctccagcagccacatcccaggggccaccaaaaccgatctcataacacaaatctag 633

                                               
Query: 408 cctaccacaagcaactccacacatgtttagagccaa 443
           ||||||||||||||||||||||||||||||||||||
Sbjct: 632 cctaccacaagcaactccacacatgtttagagccaa 597
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>dbj|AK071149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078H18, full
           insert sequence
          Length = 1149

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 206 aataagttattcagcttgcatctcccaatgcttcgatgaactgatccttgaggtggccat 265
           |||| ||| |||| |||| |||||||||| ||| |||||| |||||||| || | ||  |
Sbjct: 885 aatatgttgttcaacttgtatctcccaattctttgatgaattgatccttcagatagctgt 826

                                                                       
Query: 266 ttgatccggccattctttgcgccatcagatcaaactcatcaccgctcggatcaaaaacaa 325
           ||||||| ||||||||| | |||||||||||||||||  |||| ||||||||||||||||
Sbjct: 825 ttgatcctgccattcttcgtgccatcagatcaaactccccaccactcggatcaaaaacaa 766

                                                                       
Query: 326 aaccccctgcttcctttagaatcaaagctccagcagccacatcccaggggccaccaaaac 385
           |||| || ||||||   ||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 765 aaccaccagcttcccgaagaatcagagctccagcggccacatcccaggggccaccaaatc 706

                                                            
Query: 386 cgatctcataacacaaatctagcctaccacaagcaactccacacatgtt 434
           | ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 705 caatctcataacacaaatcaagcctaccacaggcaactccacacatgtt 657
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>gb|BT017043.1| Zea mays clone EL01N0203A06.c mRNA sequence
          Length = 722

 Score =  149 bits (75), Expect = 9e-33
 Identities = 153/179 (85%)
 Strand = Plus / Minus

                                                                       
Query: 265 tttgatccggccattctttgcgccatcagatcaaactcatcaccgctcggatcaaaaaca 324
           |||||||| ||||||||| ||| ||||| |||||||||  | ||||| || |||||||||
Sbjct: 590 tttgatcctgccattcttcgcgacatcaaatcaaactctccgccgcttgggtcaaaaaca 531

                                                                       
Query: 325 aaaccccctgcttcctttagaatcaaagctccagcagccacatcccaggggccaccaaaa 384
           |  || || |||||||  ||||| | ||| |||||||| |||||||| || |||||||| 
Sbjct: 530 aggccaccggcttcctgaagaattacagcaccagcagcaacatcccatggaccaccaaat 471

                                                                      
Query: 385 ccgatctcataacacaaatctagcctaccacaagcaactccacacatgtttagagccaa 443
           || |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct: 470 cctatctcataacacaaatctagtctaccacaggcaactccacacatgtttaaagccaa 412
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>gb|AY108945.1| Zea mays PCO115123 mRNA sequence
          Length = 1210

 Score =  149 bits (75), Expect = 9e-33
 Identities = 153/179 (85%)
 Strand = Plus / Minus

                                                                       
Query: 265 tttgatccggccattctttgcgccatcagatcaaactcatcaccgctcggatcaaaaaca 324
           |||||||| ||||||||| ||| ||||| |||||||||  | ||||| || |||||||||
Sbjct: 804 tttgatcctgccattcttcgcgacatcaaatcaaactctccgccgcttgggtcaaaaaca 745

                                                                       
Query: 325 aaaccccctgcttcctttagaatcaaagctccagcagccacatcccaggggccaccaaaa 384
           |  || || |||||||  ||||| | ||| |||||||| |||||||| || |||||||| 
Sbjct: 744 aggccaccggcttcctgaagaattacagcaccagcagcaacatcccatggaccaccaaat 685

                                                                      
Query: 385 ccgatctcataacacaaatctagcctaccacaagcaactccacacatgtttagagccaa 443
           || |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct: 684 cctatctcataacacaaatctagtctaccacaggcaactccacacatgtttaaagccaa 626
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                          
Query: 369    ccaggggccaccaaaaccgatctcataacacaaatctagcctaccacaagcaactccaca 428
              ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 185190 ccaggggccaccaaatccaatctcataacacaaatcaagcctaccacaggcaactccaca 185131

                    
Query: 429    catgtt 434
              ||||||
Sbjct: 185130 catgtt 185125



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                          
Query: 206    aataagttattcagcttgcatctcccaatgcttcgatgaactgatccttgaggtggccat 265
              |||| ||| |||| |||| |||||||||| ||| |||||| |||||||| || | ||  |
Sbjct: 185528 aatatgttgttcaacttgtatctcccaattctttgatgaattgatccttcagatagctgt 185469

                                                   
Query: 266    ttgatccggccattctttgcgccatcagatcaaactc 302
              ||||||| ||||||||| | |||||||||||||||||
Sbjct: 185468 ttgatcctgccattcttcgtgccatcagatcaaactc 185432



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                         
Query: 312    cggatcaaaaacaaaaccccctgcttcctttagaatcaaagctccagcagccacatccc 370
              |||||||||||||||||| || ||||||   ||||||| ||||||||| ||||||||||
Sbjct: 185335 cggatcaaaaacaaaaccaccagcttcccgaagaatcagagctccagcggccacatccc 185277
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                            
Query: 369      ccaggggccaccaaaaccgatctcataacacaaatctagcctaccacaagcaactccaca 428
                ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 21492279 ccaggggccaccaaatccaatctcataacacaaatcaagcctaccacaggcaactccaca 21492220

                      
Query: 429      catgtt 434
                ||||||
Sbjct: 21492219 catgtt 21492214



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                            
Query: 206      aataagttattcagcttgcatctcccaatgcttcgatgaactgatccttgaggtggccat 265
                |||| ||| |||| |||| |||||||||| ||| |||||| |||||||| || | ||  |
Sbjct: 21492617 aatatgttgttcaacttgtatctcccaattctttgatgaattgatccttcagatagctgt 21492558

                                                     
Query: 266      ttgatccggccattctttgcgccatcagatcaaactc 302
                ||||||| ||||||||| | |||||||||||||||||
Sbjct: 21492557 ttgatcctgccattcttcgtgccatcagatcaaactc 21492521



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 312      cggatcaaaaacaaaaccccctgcttcctttagaatcaaagctccagcagccacatccc 370
                |||||||||||||||||| || ||||||   ||||||| ||||||||| ||||||||||
Sbjct: 21492424 cggatcaaaaacaaaaccaccagcttcccgaagaatcagagctccagcggccacatccc 21492366
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                            
Query: 369      ccaggggccaccaaaaccgatctcataacacaaatctagcctaccacaagcaactccaca 428
                ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 21485308 ccaggggccaccaaatccaatctcataacacaaatcaagcctaccacaggcaactccaca 21485249

                      
Query: 429      catgtt 434
                ||||||
Sbjct: 21485248 catgtt 21485243



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                            
Query: 206      aataagttattcagcttgcatctcccaatgcttcgatgaactgatccttgaggtggccat 265
                |||| ||| |||| |||| |||||||||| ||| |||||| |||||||| || | ||  |
Sbjct: 21485646 aatatgttgttcaacttgtatctcccaattctttgatgaattgatccttcagatagctgt 21485587

                                                     
Query: 266      ttgatccggccattctttgcgccatcagatcaaactc 302
                ||||||| ||||||||| | |||||||||||||||||
Sbjct: 21485586 ttgatcctgccattcttcgtgccatcagatcaaactc 21485550



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 312      cggatcaaaaacaaaaccccctgcttcctttagaatcaaagctccagcagccacatccc 370
                |||||||||||||||||| || ||||||   ||||||| ||||||||| ||||||||||
Sbjct: 21485453 cggatcaaaaacaaaaccaccagcttcccgaagaatcagagctccagcggccacatccc 21485395
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 19      acgagccatttcatcgcctgc 39
               |||||||||||||||||||||
Sbjct: 1421557 acgagccatttcatcgcctgc 1421577
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>ref|XM_526452.1| PREDICTED: Pan troglodytes similar to endoglycan (LOC471068), mRNA
          Length = 2208

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 356  cagcagccacatcccaggggccaccaaaa 384
            ||||||||| | |||||||||||||||||
Sbjct: 1008 cagcagccagaccccaggggccaccaaaa 1036
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>gb|BC052585.1| Homo sapiens podocalyxin-like 2, mRNA (cDNA clone MGC:59786
           IMAGE:6264322), complete cds
          Length = 2242

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 646 cagcagccagaccccaggggccaccaaaa 674
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>gb|BC019330.1| Homo sapiens podocalyxin-like 2, mRNA (cDNA clone MGC:851
           IMAGE:3502164), complete cds
          Length = 1966

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 666 cagcagccagaccccaggggccaccaaaa 694
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>gb|AC114676.7| Mus musculus chromosome 5, clone RP24-211H1, complete sequence
          Length = 153903

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   caaaaacaaaaccccctgcttcctt 341
             ||||||||||| |||||||||||||
Sbjct: 19715 caaaaacaaaaacccctgcttcctt 19739
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>ref|XM_382844.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02668.1)
            partial mRNA
          Length = 3462

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   ttcatcgcctgcaagcatgaa 48
            |||||||||||||||||||||
Sbjct: 2232 ttcatcgcctgcaagcatgaa 2212
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>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence
          Length = 144545

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   caaaaacaaaaccccctgcttcctt 341
             ||||||||||| |||||||||||||
Sbjct: 93409 caaaaacaaaaacccctgcttcctt 93433
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>gb|AY359096.1| Homo sapiens clone DNA92243 podocalyxin-like protein (UNQ1861)
           mRNA, complete cds
          Length = 2167

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 654 cagcagccagaccccaggggccaccaaaa 682
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>gb|BC096743.1| Mus musculus ubiquitin protein ligase E3B, mRNA (cDNA clone
            MGC:102217 IMAGE:30549276), complete cds
          Length = 5236

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 5156 caaaaacaaaaacccctgcttcctt 5132
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>gb|BC023956.1| Mus musculus ubiquitin protein ligase E3B, mRNA (cDNA clone MGC:38138
            IMAGE:5321098), complete cds
          Length = 4982

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 4902 caaaaacaaaaacccctgcttcctt 4878
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>gb|BC034059.1| Mus musculus ubiquitin protein ligase E3B, mRNA (cDNA clone MGC:31117
            IMAGE:4163877), complete cds
          Length = 4206

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 4137 caaaaacaaaaacccctgcttcctt 4113
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>gb|AF244362.3| Mus musculus ubiquitin-protein ligase UBE3B (Ube3b) mRNA, 5'UTR and
            complete cds
          Length = 4850

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 4768 caaaaacaaaaacccctgcttcctt 4744
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>emb|CR604786.1| full-length cDNA clone CS0DF035YH05 of Fetal brain of Homo sapiens
           (human)
          Length = 2148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 669 cagcagccagaccccaggggccaccaaaa 697
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>emb|CR596999.1| full-length cDNA clone CS0DF002YI19 of Fetal brain of Homo sapiens
           (human)
          Length = 2117

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 624 cagcagccagaccccaggggccaccaaaa 652
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>ref|NM_015720.1| Homo sapiens podocalyxin-like 2 (PODXL2), mRNA
          Length = 2269

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 650 cagcagccagaccccaggggccaccaaaa 678
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>gb|BC026415.1| Mus musculus ubiquitin protein ligase E3B, mRNA (cDNA clone
            IMAGE:4217597), partial cds
          Length = 2738

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 2641 caaaaacaaaaacccctgcttcctt 2617
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>dbj|AK088518.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430019F12
            product:ubiquitin protein ligase E3B, full insert
            sequence
          Length = 4886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 4829 caaaaacaaaaacccctgcttcctt 4805
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>ref|NM_054093.2| Mus musculus ubiquitin protein ligase E3B (Ube3b), mRNA
          Length = 5191

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  caaaaacaaaaccccctgcttcctt 341
            ||||||||||| |||||||||||||
Sbjct: 5133 caaaaacaaaaacccctgcttcctt 5109
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>dbj|AK182992.1| Mus musculus cDNA, clone:Y0G0124G04, strand:unspecified
          Length = 147

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 317 caaaaacaaaaccccctgcttcctt 341
           ||||||||||| |||||||||||||
Sbjct: 65  caaaaacaaaaacccctgcttcctt 89
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>gb|AF219137.1|AF219137 Homo sapiens endoglycan mRNA, complete cds
          Length = 2269

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 356 cagcagccacatcccaggggccaccaaaa 384
           ||||||||| | |||||||||||||||||
Sbjct: 650 cagcagccagaccccaggggccaccaaaa 678
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>gb|AC023593.14| Homo sapiens 3 BAC RP11-427I6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189757

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 356    cagcagccacatcccaggggccaccaaaa 384
              ||||||||| | |||||||||||||||||
Sbjct: 120864 cagcagccagaccccaggggccaccaaaa 120836
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>gb|AC146800.3| Xenopus tropicalis clone CH216-56E14, complete sequence
          Length = 124911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  gggccaccaaaaccgatctc 392
            ||||||||||||||||||||
Sbjct: 5040 gggccaccaaaaccgatctc 5021
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>ref|XM_947851.1| Theileria annulata strain Ankara hypothetical protein (TA07585)
            partial mRNA
          Length = 8598

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 419  caactccacacatgtttaga 438
            ||||||||||||||||||||
Sbjct: 5644 caactccacacatgtttaga 5625
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>emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 on chromosome 20p11.22-12.1
             Contains STSs and GSSs, complete sequence
          Length = 143712

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   ccacacatgtttagagccaa 443
             ||||||||||||||||||||
Sbjct: 42558 ccacacatgtttagagccaa 42577
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>gb|AC159196.2| Mus musculus BAC clone RP23-430O17 from chromosome 13, complete sequence
          Length = 198595

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    caaaaccccctgcttccttt 342
              ||||||||||||||||||||
Sbjct: 113590 caaaaccccctgcttccttt 113571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,358,321
Number of Sequences: 3902068
Number of extensions: 4358321
Number of successful extensions: 69718
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69642
Number of HSP's gapped (non-prelim): 75
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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