Clone Name | rbart27e09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1307 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Minus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 998 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 939 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 938 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 879 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 878 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 830
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Plus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 30268652 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 30268711 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 30268712 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 30268771 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 30268772 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 30268820 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 11394154 gcgtggcacggccttcagtt 11394135
>dbj|AB110189.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 17FPG011 Length = 1129 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Minus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 817 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 758 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 757 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 698 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 697 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 649
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Plus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 60332 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 60391 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 60392 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 60451 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 60452 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 60500
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Plus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 30360074 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 30360133 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 30360134 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 30360193 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 30360194 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 30360242 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 11390917 gcgtggcacggccttcagtt 11390898
>dbj|AK065730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C05, full insert sequence Length = 1111 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Minus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 820 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 761 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 760 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 701 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 700 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 652
>dbj|AK060366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A05, full insert sequence Length = 1394 Score = 184 bits (93), Expect = 2e-43 Identities = 150/169 (88%) Strand = Plus / Minus Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 1101 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 1042 Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 1041 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 982 Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411 ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 981 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 933
>gb|AY105257.1| Zea mays PCO119343 mRNA sequence Length = 1188 Score = 133 bits (67), Expect = 5e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 290 cttcttggcctcgctgtcgaccttgaaggtggagccacacatctggccttggctgtccac 349 ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 830 cttcttgctctcgctgtcgaccttgaagatggagccgcacatctggccttggctgtccac 771 Query: 350 gcgtggcacggccttcagttcgttcagcggatgctcgaagctctgcagccc 400 ||||||||| ||||| | |||| || ||| |||||||||||||||||||| Sbjct: 770 gcgtggcaccgccttgacctcgtgcaacgggtgctcgaagctctgcagccc 720
>gb|BT019109.1| Zea mays clone Contig714.F mRNA sequence Length = 486 Score = 56.0 bits (28), Expect = 9e-05 Identities = 82/100 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||||| |||||| ||||| |||| ||||| Sbjct: 114 tgtcgaccttgaaggtggcgccgcacatggcgccttcgctgtcgacgcgcggcatggcct 55 Query: 364 tcagttcgttcagcggatgctcgaagctctgcagccctcc 403 | || ||||| || ||||||||||||| |||||||| Sbjct: 54 tgagcctgttcatggggtgctcgaagctcttgagccctcc 15
>gb|BT024180.1| Zea mays clone EL01N0417H11 mRNA sequence Length = 1180 Score = 56.0 bits (28), Expect = 9e-05 Identities = 82/100 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||||| |||||| ||||| |||| ||||| Sbjct: 803 tgtcgaccttgaaggtggcgccgcacatggcgccttcgctgtcgacgcgcggcatggcct 744 Query: 364 tcagttcgttcagcggatgctcgaagctctgcagccctcc 403 | || ||||| || ||||||||||||| |||||||| Sbjct: 743 tgagcctgttcatggggtgctcgaagctcttgagccctcc 704
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Plus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 35495 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 35554 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 35555 tcagccggttcatcgggtgctcgaagctct 35584
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Plus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 34729933 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 34729992 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 34729993 tcagccggttcatcgggtgctcgaagctct 34730022
>dbj|AK121152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J16, full insert sequence Length = 1418 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 990 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 931 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 930 tcagccggttcatcgggtgctcgaagctct 901
>dbj|AK120508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H02, full insert sequence Length = 644 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 224 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 165 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 164 tcagccggttcatcgggtgctcgaagctct 135
>dbj|AK119666.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D04, full insert sequence Length = 1278 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 850 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 791 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 790 tcagccggttcatcgggtgctcgaagctct 761
>dbj|AK106133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G01, full insert sequence Length = 1279 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
>dbj|AK104376.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G05, full insert sequence Length = 1279 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
>dbj|AK104249.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G04, full insert sequence Length = 1283 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
>dbj|AK099975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E09, full insert sequence Length = 1281 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK099653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M12, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK099368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052O07, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK099087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006D09, full insert sequence Length = 1275 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 851 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 792 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 791 tcagccggttcatcgggtgctcgaagctct 762
>dbj|AK099009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G09, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK068608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157B10, full insert sequence Length = 1500 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 1067 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 1008 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 1007 tcagccggttcatcgggtgctcgaagctct 978
>dbj|AK065314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O24, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Minus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 52.0 bits (26), Expect = 0.001 Identities = 74/90 (82%) Strand = Plus / Plus Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 72459 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 72518 Query: 364 tcagttcgttcagcggatgctcgaagctct 393 |||| ||||| ||| ||||||||||||| Sbjct: 72519 tcagccggttcatcgggtgctcgaagctct 72548
>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence Length = 226006 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 acacatctggccttggctgt 345 |||||||||||||||||||| Sbjct: 120458 acacatctggccttggctgt 120439
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 17858105 gcgtggcacggccttcagtt 17858124
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 19895566 gcgtggcacggccttcagtt 19895547
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 102451 gcgtggcacggccttcagtt 102432
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 118524 gcgtggcacggccttcagtt 118505
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 actgaactttatttattgaa 21 |||||||||||||||||||| Sbjct: 1535278 actgaactttatttattgaa 1535259
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 17784474 gcgtggcacggccttcagtt 17784493
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 140401 gcgtggcacggccttcagtt 140382
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcgtggcacggccttcagtt 369 |||||||||||||||||||| Sbjct: 77303 gcgtggcacggccttcagtt 77322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,417,201 Number of Sequences: 3902068 Number of extensions: 3417201 Number of successful extensions: 62195 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61996 Number of HSP's gapped (non-prelim): 197 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)