ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469697.1| Oryza sativa (japonica cultivar-group), mRNA 184 2e-43
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 184 2e-43
3dbj|AB110189.1| Oryza sativa (japonica cultivar-group) mRNA for ... 184 2e-43
4gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 184 2e-43
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
6dbj|AK065730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
7dbj|AK060366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
8gb|AY105257.1| Zea mays PCO119343 mRNA sequence 133 5e-28
9gb|BT019109.1| Zea mays clone Contig714.F mRNA sequence 56 9e-05
10gb|BT024180.1| Zea mays clone EL01N0417H11 mRNA sequence 56 9e-05
11emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4,... 52 0.001
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
13dbj|AK121152.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
14dbj|AK120508.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
15dbj|AK119666.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
16dbj|AK106133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
17dbj|AK104376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
18dbj|AK104249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
19dbj|AK099975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
20dbj|AK099653.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
21dbj|AK099368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
22dbj|AK099087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
23dbj|AK099009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
24dbj|AK068608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
25dbj|AK065314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
26emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.001
27gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, com... 40 5.5
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
30gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
31dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
32dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 5.5
33gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
34emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.5
35emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.5 
>ref|XM_469697.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1307

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Minus

                                                                       
Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
           ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 998 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 939

                                                                       
Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
           |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 938 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 879

                                                            
Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
           ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 878 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 830
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Plus

                                                                            
Query: 243      tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
                ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 30268652 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 30268711

                                                                            
Query: 303      ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
                |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 30268712 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 30268771

                                                                 
Query: 363      ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
                ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 30268772 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 30268820



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      gcgtggcacggccttcagtt 369
                ||||||||||||||||||||
Sbjct: 11394154 gcgtggcacggccttcagtt 11394135
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>dbj|AB110189.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 17FPG011
          Length = 1129

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Minus

                                                                       
Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
           ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 817 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 758

                                                                       
Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
           |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 757 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 698

                                                            
Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
           ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 697 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 649
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
             sequence
          Length = 130359

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Plus

                                                                         
Query: 243   tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
             ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 60332 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 60391

                                                                         
Query: 303   ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
             |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 60392 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 60451

                                                              
Query: 363   ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
             ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 60452 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 60500
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Plus

                                                                            
Query: 243      tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
                ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 30360074 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 30360133

                                                                            
Query: 303      ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
                |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 30360134 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 30360193

                                                                 
Query: 363      ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
                ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 30360194 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 30360242



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      gcgtggcacggccttcagtt 369
                ||||||||||||||||||||
Sbjct: 11390917 gcgtggcacggccttcagtt 11390898
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>dbj|AK065730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C05, full
           insert sequence
          Length = 1111

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Minus

                                                                       
Query: 243 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
           ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 820 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 761

                                                                       
Query: 303 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
           |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 760 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 701

                                                            
Query: 363 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
           ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 700 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 652
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>dbj|AK060366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A05, full
            insert sequence
          Length = 1394

 Score =  184 bits (93), Expect = 2e-43
 Identities = 150/169 (88%)
 Strand = Plus / Minus

                                                                        
Query: 243  tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 302
            ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 1101 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 1042

                                                                        
Query: 303  ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 362
            |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct: 1041 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 982

                                                             
Query: 363  ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtgg 411
            ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 981  ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtgg 933
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>gb|AY105257.1| Zea mays PCO119343 mRNA sequence
          Length = 1188

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                       
Query: 290 cttcttggcctcgctgtcgaccttgaaggtggagccacacatctggccttggctgtccac 349
           |||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 830 cttcttgctctcgctgtcgaccttgaagatggagccgcacatctggccttggctgtccac 771

                                                              
Query: 350 gcgtggcacggccttcagttcgttcagcggatgctcgaagctctgcagccc 400
           ||||||||| ||||| |  |||| || ||| ||||||||||||||||||||
Sbjct: 770 gcgtggcaccgccttgacctcgtgcaacgggtgctcgaagctctgcagccc 720
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>gb|BT019109.1| Zea mays clone Contig714.F mRNA sequence
          Length = 486

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||||| |||||| ||||| |||| |||||
Sbjct: 114 tgtcgaccttgaaggtggcgccgcacatggcgccttcgctgtcgacgcgcggcatggcct 55

                                                   
Query: 364 tcagttcgttcagcggatgctcgaagctctgcagccctcc 403
           | ||   |||||  || |||||||||||||  ||||||||
Sbjct: 54  tgagcctgttcatggggtgctcgaagctcttgagccctcc 15
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>gb|BT024180.1| Zea mays clone EL01N0417H11 mRNA sequence
          Length = 1180

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||||| |||||| ||||| |||| |||||
Sbjct: 803 tgtcgaccttgaaggtggcgccgcacatggcgccttcgctgtcgacgcgcggcatggcct 744

                                                   
Query: 364 tcagttcgttcagcggatgctcgaagctctgcagccctcc 403
           | ||   |||||  || |||||||||||||  ||||||||
Sbjct: 743 tgagcctgttcatggggtgctcgaagctcttgagccctcc 704
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>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01,
             complete sequence
          Length = 133331

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                         
Query: 304   tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
             |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 35495 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 35554

                                           
Query: 364   tcagttcgttcagcggatgctcgaagctct 393
             ||||   ||||| ||| |||||||||||||
Sbjct: 35555 tcagccggttcatcgggtgctcgaagctct 35584
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                            
Query: 304      tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
                |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 34729933 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 34729992

                                              
Query: 364      tcagttcgttcagcggatgctcgaagctct 393
                ||||   ||||| ||| |||||||||||||
Sbjct: 34729993 tcagccggttcatcgggtgctcgaagctct 34730022
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>dbj|AK121152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J16, full
           insert sequence
          Length = 1418

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 990 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 931

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 930 tcagccggttcatcgggtgctcgaagctct 901
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>dbj|AK120508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H02, full
           insert sequence
          Length = 644

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 224 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 165

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 164 tcagccggttcatcgggtgctcgaagctct 135
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>dbj|AK119666.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D04, full
           insert sequence
          Length = 1278

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 850 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 791

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 790 tcagccggttcatcgggtgctcgaagctct 761
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>dbj|AK106133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G01, full
           insert sequence
          Length = 1279

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
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>dbj|AK104376.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G05, full
           insert sequence
          Length = 1279

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
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>dbj|AK104249.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G04, full
           insert sequence
          Length = 1283

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
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>dbj|AK099975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E09, full
           insert sequence
          Length = 1281

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
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>dbj|AK099653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M12, full
           insert sequence
          Length = 1284

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
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>dbj|AK099368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052O07, full
           insert sequence
          Length = 1284

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
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>dbj|AK099087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006D09, full
           insert sequence
          Length = 1275

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 851 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 792

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 791 tcagccggttcatcgggtgctcgaagctct 762
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>dbj|AK099009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G09, full
           insert sequence
          Length = 1284

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
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>dbj|AK068608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157B10, full
            insert sequence
          Length = 1500

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                        
Query: 304  tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
            |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 1067 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 1008

                                          
Query: 364  tcagttcgttcagcggatgctcgaagctct 393
            ||||   ||||| ||| |||||||||||||
Sbjct: 1007 tcagccggttcatcgggtgctcgaagctct 978
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>dbj|AK065314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O24, full
           insert sequence
          Length = 1284

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
           |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797

                                         
Query: 364 tcagttcgttcagcggatgctcgaagctct 393
           ||||   ||||| ||| |||||||||||||
Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
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>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete
             sequence
          Length = 103264

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                         
Query: 304   tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 363
             |||||||||||||||||| ||| |||||   ||| | ||||||||| || ||||  ||||
Sbjct: 72459 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 72518

                                           
Query: 364   tcagttcgttcagcggatgctcgaagctct 393
             ||||   ||||| ||| |||||||||||||
Sbjct: 72519 tcagccggttcatcgggtgctcgaagctct 72548
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>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence
          Length = 226006

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    acacatctggccttggctgt 345
              ||||||||||||||||||||
Sbjct: 120458 acacatctggccttggctgt 120439
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 350      gcgtggcacggccttcagtt 369
                ||||||||||||||||||||
Sbjct: 17858105 gcgtggcacggccttcagtt 17858124
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      gcgtggcacggccttcagtt 369
                ||||||||||||||||||||
Sbjct: 19895566 gcgtggcacggccttcagtt 19895547
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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15,
              complete sequence
          Length = 159270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    gcgtggcacggccttcagtt 369
              ||||||||||||||||||||
Sbjct: 102451 gcgtggcacggccttcagtt 102432
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>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0047D12
          Length = 145981

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    gcgtggcacggccttcagtt 369
              ||||||||||||||||||||
Sbjct: 118524 gcgtggcacggccttcagtt 118505
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       actgaactttatttattgaa 21
               ||||||||||||||||||||
Sbjct: 1535278 actgaactttatttattgaa 1535259
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 350      gcgtggcacggccttcagtt 369
                ||||||||||||||||||||
Sbjct: 17784474 gcgtggcacggccttcagtt 17784493
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>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    gcgtggcacggccttcagtt 369
              ||||||||||||||||||||
Sbjct: 140401 gcgtggcacggccttcagtt 140382
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>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   gcgtggcacggccttcagtt 369
             ||||||||||||||||||||
Sbjct: 77303 gcgtggcacggccttcagtt 77322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,417,201
Number of Sequences: 3902068
Number of extensions: 3417201
Number of successful extensions: 62195
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61996
Number of HSP's gapped (non-prelim): 197
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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