ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27e08 |
|---|---|
| Clone Library Name | barley_pub |
>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) Length = 676 Score = 33.5 bits (75), Expect = 0.31 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -1 Query: 178 SDMFLNSHCMEGRKMIFSVAGFTDLRTGCS*VHYVCRCMYFLCQSE 41 S + LN HC++ F +A L G H + C+Y +C++E Sbjct: 98 SQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTE 143
>TF3B_HUMAN (Q92994) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2) Length = 677 Score = 32.3 bits (72), Expect = 0.69 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -1 Query: 166 LNSHCMEGRKMIFSVAGFTDLRTGCS*VHYVCRCMYFLCQSE 41 LN HC++ F +A L G H + C+Y +C++E Sbjct: 102 LNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTE 143
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1013 Score = 30.8 bits (68), Expect = 2.0 Identities = 25/82 (30%), Positives = 36/82 (43%) Frame = -1 Query: 487 YGKSPFDYELDESAGESLVTVTKSAQVKWPAETGSSYPDTLRQFVTWMLQPHPAVRPHID 308 YG+ P+ D S E L + + + + P G L TW Q A RPH D Sbjct: 849 YGERPY---WDMSDQEVLNAIEQ--EFRLPPPPGCPTGLHLLMLDTW--QKDRARRPHFD 901 Query: 307 DIIIHVDKLIAKHST*QVNGTA 242 ++ DK+I K T Q G++ Sbjct: 902 QLVAAFDKMIRKPDTLQAEGSS 923
>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (HEP) Length = 1006 Score = 30.0 bits (66), Expect = 3.4 Identities = 25/80 (31%), Positives = 34/80 (42%) Frame = -1 Query: 487 YGKSPFDYELDESAGESLVTVTKSAQVKWPAETGSSYPDTLRQFVTWMLQPHPAVRPHID 308 YG+ P+ D S E L + + + + P G L TW Q A RPH D Sbjct: 842 YGERPY---WDMSEQEVLNAIEQ--EFRLPPPPGCPPGLHLLMLDTW--QKDRARRPHFD 894 Query: 307 DIIIHVDKLIAKHST*QVNG 248 ++ DK+I K T Q G Sbjct: 895 QLVAAFDKMIRKPDTLQAGG 914
>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (MEP) Length = 1014 Score = 29.3 bits (64), Expect = 5.8 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = -1 Query: 487 YGKSPFDYELDESAGESLVTVTKSAQVKWPAETGSSYPDTLRQFVTWMLQPHPAVRPHID 308 YG+ P+ ++++E E L + + + + P G L TW Q A RPH D Sbjct: 850 YGERPY-WDMNEQ--EVLNAIEQ--EFRLPPPPGCPPGLHLLMLDTW--QKDRARRPHFD 902 Query: 307 DIIIHVDKLIAKHST*QVNG 248 ++ DK+I K T Q G Sbjct: 903 QLVAAFDKMIRKPDTLQAEG 922
>K0056_HUMAN (P42695) Protein KIAA0056| Length = 1498 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +3 Query: 282 SLSTWMIMSSIWGRTAGCGCSIQVTNWRRVSG*EEPVS--AGHFTCAL 419 S WM++S I G + S + +W ++S + P S GH C + Sbjct: 715 SAPAWMLLSKIAGSSPRLDYSRIIQSWEKISSQQNPNSNTLGHILCVI 762
>HEMA_MEASI (P26028) Hemagglutinin glycoprotein| Length = 617 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 222 PFLLSVEAVPFTCQVECFAMSLSTW 296 PF L ++ VP QVECF W Sbjct: 554 PFRLPIKGVPIELQVECFTWDQKLW 578
>HEMA_MEASH (P06830) Hemagglutinin glycoprotein| Length = 617 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 222 PFLLSVEAVPFTCQVECFAMSLSTW 296 PF L ++ VP QVECF W Sbjct: 554 PFRLPIKGVPIELQVECFTWDQKLW 578
>HEMA_MEASE (P08362) Hemagglutinin glycoprotein| Length = 617 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 222 PFLLSVEAVPFTCQVECFAMSLSTW 296 PF L ++ VP QVECF W Sbjct: 554 PFRLPIKGVPIELQVECFTWDQKLW 578
>HEMA_MEASA (P35971) Hemagglutinin glycoprotein| Length = 617 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 222 PFLLSVEAVPFTCQVECFAMSLSTW 296 PF L ++ VP QVECF W Sbjct: 554 PFRLPIKGVPIELQVECFTWDQKLW 578
>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1005 Score = 28.9 bits (63), Expect = 7.6 Identities = 25/80 (31%), Positives = 34/80 (42%) Frame = -1 Query: 487 YGKSPFDYELDESAGESLVTVTKSAQVKWPAETGSSYPDTLRQFVTWMLQPHPAVRPHID 308 YG+ P+ D S E L + + + + P G L TW Q A RPH D Sbjct: 841 YGERPY---WDMSEQEVLNAIEQ--EFRLPPPPGCPPGLHLLMLDTW--QKDRARRPHFD 893 Query: 307 DIIIHVDKLIAKHST*QVNG 248 ++ DK+I K T Q G Sbjct: 894 QLVAAFDKMIRKPDTLQACG 913
>NUAK1_HUMAN (O60285) NUAK family, SNF1-like kinase 1 (EC 2.7.11.1)| (AMPK-related protein kinase 5) Length = 661 Score = 28.9 bits (63), Expect = 7.6 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -1 Query: 487 YGKSPFDYELDESAGESLVTVTKSAQVKWPAETGSSYPDTLRQFVTWMLQPHPAVRPHID 308 YG PFD D ++L+ S + + P + P R + WML +P R I+ Sbjct: 248 YGTMPFD-GFDH---KNLIRQISSGEYREPTQ-----PSDARGLIRWMLMVNPDRRATIE 298 Query: 307 DIIIH 293 DI H Sbjct: 299 DIANH 303
>DAXX_HUMAN (Q9UER7) Death domain-associated protein 6 (Daxx) (hDaxx) (Fas| death domain-associated protein) (ETS1-associated protein 1) (EAP1) Length = 740 Score = 28.9 bits (63), Expect = 7.6 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -1 Query: 388 GSSYPDTLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKHS 266 G+ YP+ R+ + +P P P D++ V+K A+HS Sbjct: 261 GTRYPEVNRRIERLINKPGPDTFPDYGDVLRAVEKAAARHS 301
>DAXX_CANFA (Q5TJE1) Death domain-associated protein 6 (Daxx)| Length = 737 Score = 28.9 bits (63), Expect = 7.6 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -1 Query: 388 GSSYPDTLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKHS 266 G+ YP+ R+ + +P P P D++ V+K A+HS Sbjct: 260 GTRYPEVNRRIERLINKPGPDTFPDYGDVLRAVEKAAARHS 300
>NUAK1_MOUSE (Q641K5) NUAK family, SNF1-like kinase 1 (EC 2.7.11.1)| Length = 658 Score = 28.9 bits (63), Expect = 7.6 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -1 Query: 487 YGKSPFDYELDESAGESLVTVTKSAQVKWPAETGSSYPDTLRQFVTWMLQPHPAVRPHID 308 YG PFD D ++L+ S + + P + P R + WML +P R I+ Sbjct: 249 YGTMPFD-GFDH---KNLIRQISSGEYREPTQ-----PSDARGLIRWMLMVNPDRRATIE 299 Query: 307 DIIIH 293 DI H Sbjct: 300 DIANH 304
>HEMA_MEASY (P28081) Hemagglutinin glycoprotein| Length = 620 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +3 Query: 222 PFLLSVEAVPFTCQVECFAMSLSTW 296 PF L + VP QVECF W Sbjct: 554 PFRLPIRGVPIELQVECFTWDQKLW 578 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,444,847 Number of Sequences: 219361 Number of extensions: 1188093 Number of successful extensions: 2737 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2737 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
