ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
2dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
3dbj|AK112084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
4gb|BT018293.1| Zea mays clone EL01T0205F02.c mRNA sequence 86 1e-13
5gb|AY109101.1| Zea mays PCO082934 mRNA sequence 86 1e-13
6gb|AC144772.2| Mus musculus BAC clone RP24-173G12 from chromosom... 46 0.11
7ref|XM_383851.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 44 0.42
8gb|AC112180.2| Homo sapiens chromosome 5 clone RP11-130F17, comp... 44 0.42
9gb|AC093295.2| Homo sapiens chromosome 5 clone RP11-535A15, comp... 44 0.42
10gb|AC161358.8| Mus musculus chromosome 18, clone wi1-1930A12, co... 42 1.7
11emb|AL662897.6| Human DNA sequence from clone RP11-309C8 on chro... 42 1.7
12emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chro... 42 1.7
13gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, com... 40 6.6
14ref|XM_450718.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
15ref|XM_506657.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.6
16gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, comp... 40 6.6
17gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome... 40 6.6
18gb|AC125466.4| Mus musculus BAC clone RP23-477O24 from chromosom... 40 6.6
19gb|AC127692.4| Mus musculus BAC clone RP23-49P3 from chromosome ... 40 6.6
20gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome... 40 6.6
21gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosom... 40 6.6
22gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complet... 40 6.6
23gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, comp... 40 6.6
24gb|AF045642.2| Caenorhabditis elegans cosmid C17H12, complete se... 40 6.6
25gb|AC148765.24| Medicago truncatula clone mth2-34f9, complete se... 40 6.6
26gb|AC137552.11| Medicago truncatula clone mth2-9k5, complete seq... 40 6.6
27gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete s... 40 6.6
28emb|AL590636.12| Human DNA sequence from clone RP11-50E19 on chr... 40 6.6
29emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on ch... 40 6.6
30gb|AF506843.1| Papaya ringspot virus isolate VNW-48 coat protein... 40 6.6
31gb|AC104590.4| Homo sapiens chromosome 15, clone RP11-643M14, co... 40 6.6
32gb|AC090772.9| Homo sapiens chromosome 18, clone RP11-799B12, co... 40 6.6
33gb|AC018642.7| Homo sapiens chromosome 7 clone RP11-329I5, compl... 40 6.6
34gb|AC009554.14| Homo sapiens, clone RP11-16B9, complete sequence 40 6.6
35emb|BX511224.8| Zebrafish DNA sequence from clone CH211-113D14 i... 40 6.6
36gb|AC018698.5|AC018698 Homo sapiens BAC clone RP11-579C11 from 1... 40 6.6
37gb|AC009362.8|AC009362 Homo sapiens chromosome 7 clone RP11-256C... 40 6.6
38dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
39dbj|AK112000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
40dbj|AK099105.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
41gb|AC127366.4| Mus musculus BAC clone RP23-10E9 from 8, complete... 40 6.6
42emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chr... 40 6.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                           
Query: 267     gagtgcttcgcaatgagtttatcaacgtggatgataatgtcgtcgatatggggacgaact 326
               |||| ||| |||||||| ||||||||||||||||| || || || || ||||||||||||
Sbjct: 2860938 gagtactttgcaatgagcttatcaacgtggatgatgatatcatcaatgtggggacgaact 2860997

                                                                    
Query: 327     gcaggatgtggctgcagcatccaggttacaaactggcggagagtatcaggata 379
               |||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 2860998 gcaggatgaggctgcagcatccaagttacaaactggcggagagaatcaggata 2861050



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 435     aagctttcgccagcagattcatcgagctcataatcaaatggggattttcc 484
               ||||| || ||||||| |||||| || |||||||||||||| ||||||||
Sbjct: 2861106 aagctctcaccagcagcttcatcaagttcataatcaaatggagattttcc 2861155



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 174     tcacttttaatgaatcaagcagatgttctataaacttaca 213
               |||| |||||||||||||| |||||||||||  |||||||
Sbjct: 2860855 tcacatttaatgaatcaagtagatgttctattgacttaca 2860894



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 326      tgcaggatgtggctgcagcatccaggttacaaactg 361
                |||||| |||||||| ||||||||||| | ||||||
Sbjct: 12377578 tgcaggttgtggctgaagcatccaggtaataaactg 12377613
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>dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0017O03
          Length = 180651

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                         
Query: 267   gagtgcttcgcaatgagtttatcaacgtggatgataatgtcgtcgatatggggacgaact 326
             |||| ||| |||||||| ||||||||||||||||| || || || || ||||||||||||
Sbjct: 51930 gagtactttgcaatgagcttatcaacgtggatgatgatatcatcaatgtggggacgaact 51989

                                                                  
Query: 327   gcaggatgtggctgcagcatccaggttacaaactggcggagagtatcaggata 379
             |||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 51990 gcaggatgaggctgcagcatccaagttacaaactggcggagagaatcaggata 52042



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 435   aagctttcgccagcagattcatcgagctcataatcaaatggggattttcc 484
             ||||| || ||||||| |||||| || |||||||||||||| ||||||||
Sbjct: 52098 aagctctcaccagcagcttcatcaagttcataatcaaatggagattttcc 52147



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 174   tcacttttaatgaatcaagcagatgttctataaacttaca 213
             |||| |||||||||||||| |||||||||||  |||||||
Sbjct: 51847 tcacatttaatgaatcaagtagatgttctattgacttaca 51886
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>dbj|AK112084.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A07, full
            insert sequence
          Length = 1615

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                        
Query: 267  gagtgcttcgcaatgagtttatcaacgtggatgataatgtcgtcgatatggggacgaact 326
            |||| ||| |||||||| ||||||||||||||||| || || || || ||||||||||||
Sbjct: 1214 gagtactttgcaatgagcttatcaacgtggatgatgatatcatcaatgtggggacgaact 1155

                                                                 
Query: 327  gcaggatgtggctgcagcatccaggttacaaactggcggagagtatcaggata 379
            |||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 1154 gcaggatgaggctgcagcatccaagttacaaactggcggagagaatcaggata 1102



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 435  aagctttcgccagcagattcatcgagctcataatcaaatggggattttcc 484
            ||||| || ||||||| |||||| || |||||||||||||| ||||||||
Sbjct: 1046 aagctctcaccagcagcttcatcaagttcataatcaaatggagattttcc 997



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 174  tcacttttaatgaatcaagcagatgttctataaacttaca 213
            |||| |||||||||||||| |||||||||||  |||||||
Sbjct: 1297 tcacatttaatgaatcaagtagatgttctattgacttaca 1258
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>gb|BT018293.1| Zea mays clone EL01T0205F02.c mRNA sequence
          Length = 1238

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                       
Query: 282 agtttatcaacgtggatgataatgtcgtcgatatggggacgaactgcaggatgtggctgc 341
           ||||||||||| || || || || || || ||||| ||||||||||| ||||||||||||
Sbjct: 946 agtttatcaacatgaattatgatatcatcaatatgaggacgaactgcgggatgtggctgc 887

                                              
Query: 342 agcatccaggttacaaactggcggagagtatcagg 376
           |||||||| |||| |||||||||||| | ||||||
Sbjct: 886 agcatccaagttataaactggcggagggaatcagg 852



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 434 caagctttcgccagcagattcatcgagctcataatcaaatggggattttccata 487
           ||||||||| |||| ||| ||||| ||||||||||||||||| || ||||||||
Sbjct: 794 caagctttcaccagaagactcatcaagctcataatcaaatggagactttccata 741
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>gb|AY109101.1| Zea mays PCO082934 mRNA sequence
          Length = 1538

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 282  agtttatcaacgtggatgataatgtcgtcgatatggggacgaactgcaggatgtggctgc 341
            ||||||||||| || || || || || || ||||| ||||||||||| ||||||||||||
Sbjct: 1255 agtttatcaacatgaattatgatatcatcaatatgaggacgaactgcgggatgtggctgc 1196

                                               
Query: 342  agcatccaggttacaaactggcggagagtatcagg 376
            |||||||| |||| |||||||||||| | ||||||
Sbjct: 1195 agcatccaagttataaactggcggagggaatcagg 1161



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 434  caagctttcgccagcagattcatcgagctcataatcaaatggggattttccata 487
            ||||||||| |||| ||| ||||| ||||||||||||||||| || ||||||||
Sbjct: 1103 caagctttcaccagaagactcatcaagctcataatcaaatggagactttccata 1050
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>gb|AC144772.2| Mus musculus BAC clone RP24-173G12 from chromosome 15, complete
             sequence
          Length = 160630

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 127   aaaatatcatctttcttccttcc 149
             |||||||||||||||||||||||
Sbjct: 72808 aaaatatcatctttcttccttcc 72830
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>ref|XM_383851.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03675.1)
            partial mRNA
          Length = 1590

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 214  cacgaattccttttcttctttctgtt 239
            ||||||||||||||||||| ||||||
Sbjct: 1321 cacgaattccttttcttctctctgtt 1346
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>gb|AC112180.2| Homo sapiens chromosome 5 clone RP11-130F17, complete sequence
          Length = 166720

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 54    aaaaaatacatacatctacagacataatgt 83
             ||||||||||||||||| |||| |||||||
Sbjct: 68821 aaaaaatacatacatcttcagaaataatgt 68792
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>gb|AC093295.2| Homo sapiens chromosome 5 clone RP11-535A15, complete sequence
          Length = 203831

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 54    aaaaaatacatacatctacagacataatgt 83
             ||||||||||||||||| |||| |||||||
Sbjct: 20581 aaaaaatacatacatcttcagaaataatgt 20610
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>gb|AC161358.8| Mus musculus chromosome 18, clone wi1-1930A12, complete sequence
          Length = 42218

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   atctttcttccttccatacaa 155
             |||||||||||||||||||||
Sbjct: 18853 atctttcttccttccatacaa 18833
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>emb|AL662897.6| Human DNA sequence from clone RP11-309C8 on chromosome X, complete
            sequence
          Length = 84987

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 54   aaaaaatacatacatctacag 74
            |||||||||||||||||||||
Sbjct: 3266 aaaaaatacatacatctacag 3286
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>emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chromosome 10p14-15.3,
              complete sequence
          Length = 172657

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     aaatacatacatctacagaca 77
              |||||||||||||||||||||
Sbjct: 166507 aaatacatacatctacagaca 166527
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>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence
          Length = 222682

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   attccttttcttctttctgt 238
             ||||||||||||||||||||
Sbjct: 63929 attccttttcttctttctgt 63948
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>ref|XM_450718.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1332

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 326  tgcaggatgtggctgcagcatccaggttacaaactg 361
            |||||| |||||||| ||||||||||| | ||||||
Sbjct: 1036 tgcaggttgtggctgaagcatccaggtaataaactg 1001
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>ref|XM_506657.1| PREDICTED Oryza sativa (japonica cultivar-group), P0599F09.13 mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 326  tgcaggatgtggctgcagcatccaggttacaaactg 361
            |||||| |||||||| ||||||||||| | ||||||
Sbjct: 1064 tgcaggttgtggctgaagcatccaggtaataaactg 1029
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>gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, complete cds
          Length = 206310

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     cacaaaaaatacatacatct 70
              ||||||||||||||||||||
Sbjct: 130323 cacaaaaaatacatacatct 130304
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>gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome 3, complete sequence
          Length = 185436

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gtggctgcagcatccaggtt 353
             ||||||||||||||||||||
Sbjct: 79330 gtggctgcagcatccaggtt 79311
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>gb|AC125466.4| Mus musculus BAC clone RP23-477O24 from chromosome 9, complete sequence
          Length = 150128

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    ttccttttcttctttctgtt 239
              ||||||||||||||||||||
Sbjct: 139134 ttccttttcttctttctgtt 139153
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>gb|AC127692.4| Mus musculus BAC clone RP23-49P3 from chromosome 5, complete sequence
          Length = 243940

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    agctcataatcaaatgggga 478
              ||||||||||||||||||||
Sbjct: 239396 agctcataatcaaatgggga 239377
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>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete sequence
          Length = 149451

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gtggctgcagcatccaggtt 353
              ||||||||||||||||||||
Sbjct: 145649 gtggctgcagcatccaggtt 145630
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>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence
          Length = 183428

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   ttccttttcttctttctgtt 239
             ||||||||||||||||||||
Sbjct: 76875 ttccttttcttctttctgtt 76856
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>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence
          Length = 214280

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    ttccttttcttctttctgtt 239
              ||||||||||||||||||||
Sbjct: 200912 ttccttttcttctttctgtt 200893
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>gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, complete sequence
          Length = 228717

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    agctcataatcaaatgggga 478
              ||||||||||||||||||||
Sbjct: 201504 agctcataatcaaatgggga 201523
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>gb|AF045642.2| Caenorhabditis elegans cosmid C17H12, complete sequence
          Length = 47345

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    atgatatcattttattgacc 33
             ||||||||||||||||||||
Sbjct: 40510 atgatatcattttattgacc 40491
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>gb|AC148765.24| Medicago truncatula clone mth2-34f9, complete sequence
          Length = 85199

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   tcatctttcttccttccatacaat 156
             |||||||||||||||||| |||||
Sbjct: 78821 tcatctttcttccttccaaacaat 78798
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>gb|AC137552.11| Medicago truncatula clone mth2-9k5, complete sequence
          Length = 122089

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   tcatctttcttccttccatacaat 156
             |||||||||||||||||| |||||
Sbjct: 13126 tcatctttcttccttccaaacaat 13103
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>gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete sequence
          Length = 125734

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   ttttcttctttctgttgaag 243
             ||||||||||||||||||||
Sbjct: 96064 ttttcttctttctgttgaag 96083
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>emb|AL590636.12| Human DNA sequence from clone RP11-50E19 on chromosome 10 Contains the 3'
              end of the ITGA8 gene for integrin alpha 8, complete
              sequence
          Length = 141790

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cacaaaaaatacatacatct 70
              ||||||||||||||||||||
Sbjct: 134336 cacaaaaaatacatacatct 134355
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>emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on chromosome 10 Contains the
              5' end of the gene for KIAA0940 protein, a succinate
              dehydrogenase complex pseudogene, the 5' end of a novel
              gene (FLJ20445), a nucleolar protein family A member 2
              pseudogene 1 (NOLA2P1) and a CpG island, complete sequence
          Length = 213648

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ttccatttacttgtcaagtc 266
              ||||||||||||||||||||
Sbjct: 189336 ttccatttacttgtcaagtc 189355
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>gb|AF506843.1| Papaya ringspot virus isolate VNW-48 coat protein (cp) gene,
           partial cds
          Length = 840

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 ttccttttcttctttctgtt 239
           ||||||||||||||||||||
Sbjct: 51  ttccttttcttctttctgtt 32
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>gb|AC104590.4| Homo sapiens chromosome 15, clone RP11-643M14, complete sequence
          Length = 191212

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   aatcaagcagatgttctata 205
             ||||||||||||||||||||
Sbjct: 92266 aatcaagcagatgttctata 92247
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>gb|AC090772.9| Homo sapiens chromosome 18, clone RP11-799B12, complete sequence
          Length = 189763

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   cctgctacagaaaatatcat 136
             ||||||||||||||||||||
Sbjct: 70110 cctgctacagaaaatatcat 70091
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>gb|AC018642.7| Homo sapiens chromosome 7 clone RP11-329I5, complete sequence
          Length = 194523

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     aaaaatacatacatctacag 74
              ||||||||||||||||||||
Sbjct: 124946 aaaaatacatacatctacag 124965
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>gb|AC009554.14| Homo sapiens, clone RP11-16B9, complete sequence
          Length = 197639

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  aatcaagcagatgttctata 205
            ||||||||||||||||||||
Sbjct: 7461 aatcaagcagatgttctata 7480
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>emb|BX511224.8| Zebrafish DNA sequence from clone CH211-113D14 in linkage group 2,
              complete sequence
          Length = 186709

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cacaaaaaatacatacatct 70
              ||||||||||||||||||||
Sbjct: 177998 cacaaaaaatacatacatct 178017
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>gb|AC018698.5|AC018698 Homo sapiens BAC clone RP11-579C11 from 12, complete sequence
          Length = 204713

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    aattccttttcttctttctg 237
              ||||||||||||||||||||
Sbjct: 131034 aattccttttcttctttctg 131015
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>gb|AC009362.8|AC009362 Homo sapiens chromosome 7 clone RP11-256C6, complete sequence
          Length = 160156

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   aaaaatacatacatctacag 74
            ||||||||||||||||||||
Sbjct: 4264 aaaaatacatacatctacag 4283
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>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0599F09
          Length = 157415

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 326   tgcaggatgtggctgcagcatccaggttacaaactg 361
             |||||| |||||||| ||||||||||| | ||||||
Sbjct: 43162 tgcaggttgtggctgaagcatccaggtaataaactg 43197
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>dbj|AK112000.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B07, full
            insert sequence
          Length = 1386

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 326  tgcaggatgtggctgcagcatccaggttacaaactg 361
            |||||| |||||||| ||||||||||| | ||||||
Sbjct: 1064 tgcaggttgtggctgaagcatccaggtaataaactg 1029
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>dbj|AK099105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026N24, full
            insert sequence
          Length = 1334

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 326  tgcaggatgtggctgcagcatccaggttacaaactg 361
            |||||| |||||||| ||||||||||| | ||||||
Sbjct: 1038 tgcaggttgtggctgaagcatccaggtaataaactg 1003
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>gb|AC127366.4| Mus musculus BAC clone RP23-10E9 from 8, complete sequence
          Length = 177375

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    attccttttcttctttctgt 238
              ||||||||||||||||||||
Sbjct: 108104 attccttttcttctttctgt 108123
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>emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chromosome X, complete
              sequence
          Length = 201060

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    ttccttttcttctttctgtt 239
              ||||||||||||||||||||
Sbjct: 122541 ttccttttcttctttctgtt 122522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,518,915
Number of Sequences: 3902068
Number of extensions: 5518915
Number of successful extensions: 137953
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137794
Number of HSP's gapped (non-prelim): 159
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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