ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF411228.1|AF411228 Hordeum vulgare ascorbate peroxidase mRNA... 141 4e-31
2gb|BT009090.1| Triticum aestivum clone wkm2c.pk0002.f7:fis, full... 78 5e-12
3gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 38 4.6
4gb|AC153140.5| Mus musculus BAC clone RP23-340P19 from chromosom... 38 4.6
5gb|AE009482.1| Brucella melitensis 16M chromosome I, section 39 ... 38 4.6
6gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 38 4.6
7gb|AC151533.3| Mus musculus BAC clone RP24-92D11 from 14, comple... 38 4.6
8gb|AC148978.3| Mus musculus BAC clone RP23-359K8 from 14, comple... 38 4.6
9emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 38 4.6

>gb|AF411228.1|AF411228 Hordeum vulgare ascorbate peroxidase mRNA, complete cds
          Length = 1138

 Score =  141 bits (71), Expect = 4e-31
 Identities = 80/83 (96%)
 Strand = Plus / Minus

                                                                        
Query: 22   catttcgtcctccacagggaaaaacaaccggaaaggaactacataacacttagcggttca 81
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 catttcgttctcgacagggaaaaacaaccggaaaggaactacataacacttagcggttca 1057

                                   
Query: 82   cactacaagcagggccatcacaa 104
            ||||||||||||| |||||||||
Sbjct: 1056 cactacaagcaggtccatcacaa 1034



to top

>gb|BT009090.1| Triticum aestivum clone wkm2c.pk0002.f7:fis, full insert mRNA
           sequence
          Length = 973

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 46  caaccggaaaggaactacataacacttagcggttcacactacaagcagggccatcacaa 104
           ||||||||||||||||||||||||||| || ||||| |||||||||| | |||||||||
Sbjct: 874 caaccggaaaggaactacataacacttggcagttcatactacaagcacgcccatcacaa 816



to top

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 33      ccacagggaaaaacaaccg 51
               |||||||||||||||||||
Sbjct: 1575048 ccacagggaaaaacaaccg 1575030



to top

>gb|AC153140.5| Mus musculus BAC clone RP23-340P19 from chromosome 12, complete
             sequence
          Length = 241834

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 37    agggaaaaacaaccggaaaggaa 59
             |||||||| ||||||||||||||
Sbjct: 73653 agggaaaaccaaccggaaaggaa 73675



to top

>gb|AE009482.1| Brucella melitensis 16M chromosome I, section 39 of 195 of the
            complete sequence
          Length = 10503

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   ccacagggaaaaacaaccg 51
            |||||||||||||||||||
Sbjct: 4957 ccacagggaaaaacaaccg 4975



to top

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 33      ccacagggaaaaacaaccg 51
               |||||||||||||||||||
Sbjct: 1592862 ccacagggaaaaacaaccg 1592844



to top

>gb|AC151533.3| Mus musculus BAC clone RP24-92D11 from 14, complete sequence
          Length = 230285

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     cacactacaagcagggcca 98
              |||||||||||||||||||
Sbjct: 173382 cacactacaagcagggcca 173364



to top

>gb|AC148978.3| Mus musculus BAC clone RP23-359K8 from 14, complete sequence
          Length = 241799

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    cacactacaagcagggcca 98
             |||||||||||||||||||
Sbjct: 22532 cacactacaagcagggcca 22514



to top

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 33      ccacagggaaaaacaaccg 51
               |||||||||||||||||||
Sbjct: 1590016 ccacagggaaaaacaaccg 1589998


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 528,897
Number of Sequences: 3902068
Number of extensions: 528897
Number of successful extensions: 31047
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31022
Number of HSP's gapped (non-prelim): 25
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top