ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470112.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1454 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Minus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 1222 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1163 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 1162 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 1103 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 1102 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 1043 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 1042 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 997
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Plus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 34007642 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 34007701 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 34007702 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 34007761 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 34007762 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 34007821 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 34007822 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 34007867 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagct 366 |||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 33986116 agctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggcgtagct 33986174 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 10124569 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 10124510 Query: 373 gtcgg 377 ||||| Sbjct: 10124509 gtcgg 10124505 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagc 365 |||||||| ||| ||||||||||||| |||||||||| ||||||||| ||||| Sbjct: 10092152 gttccatgtgtccggcacgccggggatgcaccagtggatgcagtcggtgtagc 10092100 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||| |||||| | ||| |||| ||||||||||||||||||| ||||||| Sbjct: 10079714 agctggttccacgtgtccggcaggccggggaggcaccagtggctgcagtc 10079665 Score = 44.1 bits (22), Expect = 0.42 Identities = 46/54 (85%) Strand = Plus / Plus Query: 335 gggaggcaccagtgggtgcagtcggcgtagctcttggggtcggcgagctgctcc 388 ||||||||||| || ||||| || ||||||||||| |||| |||| ||||||| Sbjct: 34017089 gggaggcaccaatgcgtgcaatccgcgtagctcttcgggttcgcgatctgctcc 34017142 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 303 acagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||| ||||||| || ||||| || || |||||||||||| |||| Sbjct: 10923575 acagcagctcattccatgtatctggcactccaggaaggcaccagtggctgca 10923524
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Plus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 34098114 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 34098173 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 34098174 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 34098233 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 34098234 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 34098293 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 34098294 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 34098339 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagct 366 |||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 34076588 agctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggcgtagct 34076646 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 10122690 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 10122631 Query: 373 gtcgg 377 ||||| Sbjct: 10122630 gtcgg 10122626 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagc 365 |||||||| ||| ||||||||||||| |||||||||| ||||||||| ||||| Sbjct: 10090273 gttccatgtgtccggcacgccggggatgcaccagtggatgcagtcggtgtagc 10090221 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||| |||||| | ||| |||| ||||||||||||||||||| ||||||| Sbjct: 10077835 agctggttccacgtgtccggcaggccggggaggcaccagtggctgcagtc 10077786 Score = 44.1 bits (22), Expect = 0.42 Identities = 46/54 (85%) Strand = Plus / Plus Query: 335 gggaggcaccagtgggtgcagtcggcgtagctcttggggtcggcgagctgctcc 388 ||||||||||| || ||||| || ||||||||||| |||| |||| ||||||| Sbjct: 34107561 gggaggcaccaatgcgtgcaatccgcgtagctcttcgggttcgcgatctgctcc 34107614 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 303 acagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||| ||||||| || ||||| || || |||||||||||| |||| Sbjct: 10921676 acagcagctcattccatgtatctggcactccaggaaggcaccagtggctgca 10921625
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Minus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 50049 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 49990 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 49989 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 49930 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 49929 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 49870 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 49869 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 49824 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagct 366 |||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 71575 agctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggcgtagct 71517 Score = 44.1 bits (22), Expect = 0.42 Identities = 46/54 (85%) Strand = Plus / Minus Query: 335 gggaggcaccagtgggtgcagtcggcgtagctcttggggtcggcgagctgctcc 388 ||||||||||| || ||||| || ||||||||||| |||| |||| ||||||| Sbjct: 40602 gggaggcaccaatgcgtgcaatccgcgtagctcttcgggttcgcgatctgctcc 40549
>dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A10, full insert sequence Length = 1392 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Minus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 1207 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1148 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 1147 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 1088 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 1087 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 1028 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 1027 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 982
>dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K07, full insert sequence Length = 3436 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Minus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 3190 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 3131 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 3130 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 3071 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 3070 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 3011 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 3010 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 2965
>dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A07, full insert sequence Length = 1437 Score = 202 bits (102), Expect = 8e-49 Identities = 196/226 (86%), Gaps = 6/226 (2%) Strand = Plus / Minus Query: 261 gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 320 |||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| | Sbjct: 1252 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1193 Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggggt---cgg 377 ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct: 1192 cgtcggggacgccggggaggcaccagtgggtgcagtcggcgtagctcctcgggtcggcgg 1133 Query: 378 cgagctgctccttggtcggcggcgccca---ctgctcgctatacacctgcgtgtgcgcgt 434 ||||||||||| |||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 1132 cgagctgctccgccgtcggcttcgcccaccgctgctccctgtacacctgcgtgtgcgcgt 1073 Query: 435 cccggcggtactcggacatctgcgtgacgttcaccacgccgacggg 480 | |||||| ||| |||||| | |||||||||||||| |||||||| Sbjct: 1072 cgcggcggagctccgacatccgggtgacgttcaccaccccgacggg 1027
>gb|AY108866.1| Zea mays PCO116267 mRNA sequence Length = 858 Score = 176 bits (89), Expect = 4e-41 Identities = 170/197 (86%) Strand = Plus / Minus Query: 284 gggaagaagagcttccagtacagcagctcgttccatgcgtcgggcacgccggggaggcac 343 |||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||| Sbjct: 537 gggaagaagagcttccagtagagcagctcgttccacgtgtccggcacgccggggaggcac 478 Query: 344 cagtgggtgcagtcggcgtagctcttggggtcggcgagctgctccttggtcggcggcgcc 403 ||||| |||||||||||||||||| ||||||||||| ||||||| |||||| | || Sbjct: 477 cagtgcgtgcagtcggcgtagctcctggggtcggcgcgctgctcggccgtcggctccacc 418 Query: 404 cactgctcgctatacacctgcgtgtgcgcgtcccggcggtactcggacatctgcgtgacg 463 ||||||| | || |||||||||||||||||||||||||||||||| | |||||| | Sbjct: 417 cactgcttcttgtaggtctgcgtgtgcgcgtcccggcggtactcggacagccgcgtgatg 358 Query: 464 ttcaccacgccgacggg 480 || |||| |||||||| Sbjct: 357 ttgaccagcccgacggg 341
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 119 bits (60), Expect = 9e-24 Identities = 135/160 (84%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctc 367 ||||||||||| | ||| ||| ||||||||||||||||||| ||||||||||||| || Sbjct: 86259 agctcgttccacgtgtcctgcaggccggggaggcaccagtggacgcagtcggcgtaggtc 86318 Query: 368 ttggggtcggcgagctgctccttggtcggcggcgcccactgctcgctatacacctgcgtg 427 ||||||||||||||||||||| |||||||||| |||||||| | |||||| |||| Sbjct: 86319 ttggggtcggcgagctgctccggcgtcggcggcgtccactgcttcttgtacaccgacgtg 86378 Query: 428 tgcgcgtcccggcggtactcggacatctgcgtgacgttca 467 ||||||||| ||||||| |||| |||||| ||||||| Sbjct: 86379 tgcgcgtccttgcggtacagcgacagctgcgtcacgttca 86418
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 119 bits (60), Expect = 9e-24 Identities = 135/160 (84%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctc 367 ||||||||||| | ||| ||| ||||||||||||||||||| ||||||||||||| || Sbjct: 16762149 agctcgttccacgtgtcctgcaggccggggaggcaccagtggacgcagtcggcgtaggtc 16762208 Query: 368 ttggggtcggcgagctgctccttggtcggcggcgcccactgctcgctatacacctgcgtg 427 ||||||||||||||||||||| |||||||||| |||||||| | |||||| |||| Sbjct: 16762209 ttggggtcggcgagctgctccggcgtcggcggcgtccactgcttcttgtacaccgacgtg 16762268 Query: 428 tgcgcgtcccggcggtactcggacatctgcgtgacgttca 467 ||||||||| ||||||| |||| |||||| ||||||| Sbjct: 16762269 tgcgcgtccttgcggtacagcgacagctgcgtcacgttca 16762308 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgta 363 ||||||| ||||||||||||||||||||| ||||||| ||||| Sbjct: 22936283 cgtcggggacgccggggaggcaccagtggatgcagtccgcgta 22936325 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 332 ccggggaggcaccagtgggtgcagtcggcgta 363 ||||| |||||||||||| ||||||||||||| Sbjct: 29064403 ccgggcaggcaccagtggctgcagtcggcgta 29064434 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 310 ctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||| |||| || || |||||||||||| ||||||| Sbjct: 16646913 ctcgttccatgtgtctggcaacccaggtaggcaccagtggatgcagtc 16646960
>dbj|AK071031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076I22, full insert sequence Length = 1551 Score = 119 bits (60), Expect = 9e-24 Identities = 135/160 (84%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctc 367 ||||||||||| | ||| ||| ||||||||||||||||||| ||||||||||||| || Sbjct: 1370 agctcgttccacgtgtcctgcaggccggggaggcaccagtggacgcagtcggcgtaggtc 1311 Query: 368 ttggggtcggcgagctgctccttggtcggcggcgcccactgctcgctatacacctgcgtg 427 ||||||||||||||||||||| |||||||||| |||||||| | |||||| |||| Sbjct: 1310 ttggggtcggcgagctgctccggcgtcggcggcgtccactgcttcttgtacaccgacgtg 1251 Query: 428 tgcgcgtcccggcggtactcggacatctgcgtgacgttca 467 ||||||||| ||||||| |||| |||||| ||||||| Sbjct: 1250 tgcgcgtccttgcggtacagcgacagctgcgtcacgttca 1211
>ref|XM_470109.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagct 366 |||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 1397 agctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggcgtagct 1339
>dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B10, full insert sequence Length = 1616 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagct 366 |||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 1473 agctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggcgtagct 1415
>ref|XM_479393.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1326 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct: 1292 agctcgttccacgcgtccggcacgccggggaggcaccagtggctgcagtc 1243
>gb|BT018101.1| Zea mays clone EL01N0553B02.c mRNA sequence Length = 730 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 335 gggaggcaccagtgggtgcagtcggcgtagctcttggggtcggcgagctgctcc 388 ||||||||||||||| |||||||||||||| ||||||||||||| |||||||| Sbjct: 563 gggaggcaccagtggatgcagtcggcgtaggtcttggggtcggcctgctgctcc 510
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct: 27533748 agctcgttccacgcgtccggcacgccggggaggcaccagtggctgcagtc 27533699 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtag 364 |||||| | |||||| | ||| ||||||||||||||| |||||||||||||| Sbjct: 29458928 gttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcgtag 29458979
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct: 97719 agctcgttccacgcgtccggcacgccggggaggcaccagtggctgcagtc 97670
>gb|AY111273.1| Zea mays CL33564_1 mRNA sequence Length = 545 Score = 73.8 bits (37), Expect = 5e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 310 ctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctctt 369 ||||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 310 ctcgttccagacgtcggggacgcctgggaggcaccagtgcgtgcagtccgcgtagctggc 369 Query: 370 ggggtcggcgagctgctccttggtc 394 ||||| |||| ||||||||||||| Sbjct: 370 cgggtccgcgatctgctccttggtc 394
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 307 cagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct: 26766904 cagctcgttccacgcgtccggcacgccggggaggcaccagtggctgca 26766857
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 307 cagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct: 21530 cagctcgttccacgcgtccggcacgccggggaggcaccagtggctgca 21483
>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047G05 Length = 145431 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 307 cagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct: 124367 cagctcgttccacgcgtccggcacgccggggaggcaccagtggctgca 124320
>dbj|AK106651.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F10, full insert sequence Length = 1621 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 307 cagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct: 1427 cagctcgttccacgcgtccggcacgccggggaggcaccagtggctgca 1380
>ref|NM_192390.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcg 358 |||||||||||| |||||||||| ||||||||||||| |||||||| Sbjct: 1149 gttccatgcgtccggcacgccggcgaggcaccagtggctgcagtcg 1104
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcg 358 |||||||||||| |||||||||| ||||||||||||| |||||||| Sbjct: 26363100 gttccatgcgtccggcacgccggcgaggcaccagtggctgcagtcg 26363145 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 329 acgccggggaggcaccagtgggtgcagtcggcgtag 364 ||||||||||||||||||||| |||||||||||||| Sbjct: 35537180 acgccggggaggcaccagtggatgcagtcggcgtag 35537145 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 331 gccggggaggcaccagtgggtgcagtcg 358 ||||| || ||||||||||||||||||| Sbjct: 6387054 gccggcgacgcaccagtgggtgcagtcg 6387081
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcg 358 |||||||||||| |||||||||| ||||||||||||| |||||||| Sbjct: 36965 gttccatgcgtccggcacgccggcgaggcaccagtggctgcagtcg 37010
>dbj|AK073036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147O12, full insert sequence Length = 2659 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcg 358 |||||||||||| |||||||||| ||||||||||||| |||||||| Sbjct: 1215 gttccatgcgtccggcacgccggcgaggcaccagtggctgcagtcg 1170
>dbj|AK069291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013B17, full insert sequence Length = 1557 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcg 358 |||||||||||| |||||||||| ||||||||||||| |||||||| Sbjct: 1197 gttccatgcgtccggcacgccggcgaggcaccagtggctgcagtcg 1152
>ref|XM_473115.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 301 gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||||||||||||||||| | || ||||||||||| |||||||||||| ||||||| Sbjct: 2094 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccagtggctgcagtc 2038
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 301 gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||||||||||||||||| | || ||||||||||| |||||||||||| ||||||| Sbjct: 139390 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccagtggctgcagtc 139446
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 301 gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||||||||||||||||| | || ||||||||||| |||||||||||| ||||||| Sbjct: 82010 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccagtggctgcagtc 82066
>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078C05, complete sequence Length = 122116 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 70190 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 70131 Query: 373 gtcgg 377 ||||| Sbjct: 70130 gtcgg 70126 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagc 365 |||||||| ||| ||||||||||||| |||||||||| ||||||||| ||||| Sbjct: 37773 gttccatgtgtccggcacgccggggatgcaccagtggatgcagtcggtgtagc 37721 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||| |||||| | ||| |||| ||||||||||||||||||| ||||||| Sbjct: 25335 agctggttccacgtgtccggcaggccggggaggcaccagtggctgcagtc 25286
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 301 gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||||||||||||||||| | || ||||||||||| |||||||||||| ||||||| Sbjct: 25355451 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccagtggctgcagtc 25355507
>dbj|AK110898.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A08, full insert sequence Length = 1567 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagc 365 |||||||| ||| ||||||||||||| |||||||||| ||||||||| ||||| Sbjct: 1362 gttccatgtgtccggcacgccggggatgcaccagtggatgcagtcggtgtagc 1310
>dbj|AK099139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B10, full insert sequence Length = 2263 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 1760 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 1701 Query: 373 gtcgg 377 ||||| Sbjct: 1700 gtcgg 1696
>dbj|AK071432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092D01, full insert sequence Length = 2488 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 301 gtacagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||||||||||||||||| | || ||||||||||| |||||||||||| ||||||| Sbjct: 2186 gtacagcagctcgttccaggaatccggcacgccgggcaggcaccagtggctgcagtc 2130
>dbj|AK070365.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A10, full insert sequence Length = 2263 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 1760 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 1701 Query: 373 gtcgg 377 ||||| Sbjct: 1700 gtcgg 1696
>dbj|AK064880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J23, full insert sequence Length = 1747 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 1253 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 1194 Query: 373 gtcgg 377 ||||| Sbjct: 1193 gtcgg 1189
>dbj|AK060829.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C02, full insert sequence Length = 1189 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtagctcttggg 372 |||||| | |||||| | ||| ||||||||||||||| ||||||||||||| ||||||| Sbjct: 687 gttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggcgtacgtcttggg 628 Query: 373 gtcgg 377 ||||| Sbjct: 627 gtcgg 623
>ref|NM_190441.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1569 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 329 acgccggggaggcaccagtgggtgcagtcggcgtag 364 ||||||||||||||||||||| |||||||||||||| Sbjct: 1508 acgccggggaggcaccagtggatgcagtcggcgtag 1473
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 329 acgccggggaggcaccagtgggtgcagtcggcgtag 364 ||||||||||||||||||||| |||||||||||||| Sbjct: 67367 acgccggggaggcaccagtggatgcagtcggcgtag 67332
>dbj|AK105654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G05, full insert sequence Length = 1965 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 329 acgccggggaggcaccagtgggtgcagtcggcgtag 364 ||||||||||||||||||||| |||||||||||||| Sbjct: 1573 acgccggggaggcaccagtggatgcagtcggcgtag 1538
>dbj|AK101671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D09, full insert sequence Length = 2020 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 329 acgccggggaggcaccagtgggtgcagtcggcgtag 364 ||||||||||||||||||||| |||||||||||||| Sbjct: 1615 acgccggggaggcaccagtggatgcagtcggcgtag 1580
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgta 363 ||||||| ||||||||||||||||||||| ||||||| ||||| Sbjct: 40296 cgtcggggacgccggggaggcaccagtggatgcagtccgcgta 40338
>dbj|AK065359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007F12, full insert sequence Length = 2034 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 321 cgtcgggcacgccggggaggcaccagtgggtgcagtcggcgta 363 ||||||| ||||||||||||||||||||| ||||||| ||||| Sbjct: 1476 cgtcggggacgccggggaggcaccagtggatgcagtccgcgta 1434
>ref|NM_185574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1527 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtag 364 |||||| | |||||| | ||| ||||||||||||||| |||||||||||||| Sbjct: 1488 gttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcgtag 1437
>dbj|AK119589.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D01, full insert sequence Length = 2056 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtag 364 |||||| | |||||| | ||| ||||||||||||||| |||||||||||||| Sbjct: 1780 gttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcgtag 1729
>dbj|AK108401.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G04, full insert sequence Length = 884 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtag 364 |||||| | |||||| | ||| ||||||||||||||| |||||||||||||| Sbjct: 189 gttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcgtag 240
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtcggcgtag 364 |||||| | |||||| | ||| ||||||||||||||| |||||||||||||| Sbjct: 121850 gttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcgtag 121901
>gb|BT024109.1| Zea mays clone EL01N0518E03 mRNA sequence Length = 1885 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||| | ||| |||||||||||||||||||||||| |||| Sbjct: 1658 gttccacgtgtccggcacgccggggaggcaccagtggatgca 1617
>dbj|AK063646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H07, full insert sequence Length = 1399 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 |||| |||||| | ||| |||| ||||||||||||||||||| ||||||| Sbjct: 1164 agctggttccacgtgtccggcaggccggggaggcaccagtggctgcagtc 1115
>gb|AY111065.1| Zea mays CL4363_2 mRNA sequence Length = 1402 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||| | ||| |||||||||||||||||||||||| |||| Sbjct: 1078 gttccacgtgtccggcacgccggggaggcaccagtggatgca 1037
>ref|XM_475989.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 332 ccggggaggcaccagtgggtgcagtcggcgta 363 ||||| |||||||||||| ||||||||||||| Sbjct: 797 ccgggcaggcaccagtggctgcagtcggcgta 766
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 332 ccggggaggcaccagtgggtgcagtcggcgta 363 ||||| |||||||||||| ||||||||||||| Sbjct: 74458 ccgggcaggcaccagtggctgcagtcggcgta 74489
>dbj|AK064730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A12, full insert sequence Length = 1982 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 332 ccggggaggcaccagtgggtgcagtcggcgta 363 ||||| |||||||||||| ||||||||||||| Sbjct: 1850 ccgggcaggcaccagtggctgcagtcggcgta 1819
>emb|BX842655.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 10/11 Length = 349965 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 447 cggacatctgcgtgacgttcaccacgc 473 ||||||||||||||| ||||||||||| Sbjct: 236793 cggacatctgcgtgaagttcaccacgc 236767
>ref|XM_470113.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2012 Score = 44.1 bits (22), Expect = 0.42 Identities = 46/54 (85%) Strand = Plus / Minus Query: 335 gggaggcaccagtgggtgcagtcggcgtagctcttggggtcggcgagctgctcc 388 ||||||||||| || ||||| || ||||||||||| |||| |||| ||||||| Sbjct: 1271 gggaggcaccaatgcgtgcaatccgcgtagctcttcgggttcgcgatctgctcc 1218
>ref|XM_468039.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Minus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||| ||||| | |||||| || || ||||||||||||||| ||||||| Sbjct: 2054 agctcattccaggagtcgggtactccagggaggcaccagtggctgcagtc 2005
>gb|BT017701.1| Zea mays clone EL01N0445F09.c mRNA sequence Length = 1039 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 313 gttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||| | ||| |||||||||| ||||||||||||| |||| Sbjct: 823 gttccacgtgtccggcacgccggcgaggcaccagtggctgca 782
>emb|X15078.1|HCRPLCLU Halobium cutirubrum L11, L1, L10 and L12 equivalent ribosomal protein gene cluster Length = 5146 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 cgtgacgttcaccacgccgacg 478 |||||||||||||||||||||| Sbjct: 3070 cgtgacgttcaccacgccgacg 3049
>emb|X13008.1|HHRAPO H.halobium ribosomal A protein operon (ORF C, A, and B genes) for ribosomal A protein and two other ribosomal proteins Length = 2962 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 cgtgacgttcaccacgccgacg 478 |||||||||||||||||||||| Sbjct: 1383 cgtgacgttcaccacgccgacg 1362
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||| ||||| | |||||| || || ||||||||||||||| ||||||| Sbjct: 32689714 agctcattccaggagtcgggtactccagggaggcaccagtggctgcagtc 32689763
>gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the complete genome Length = 10615 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 cgtgacgttcaccacgccgacg 478 |||||||||||||||||||||| Sbjct: 1383 cgtgacgttcaccacgccgacg 1404
>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1448_G06 Length = 136823 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||| ||||| | |||||| || || ||||||||||||||| ||||||| Sbjct: 17949 agctcattccaggagtcgggtactccagggaggcaccagtggctgcagtc 17998
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Plus Query: 308 agctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||| ||||| | |||||| || || ||||||||||||||| ||||||| Sbjct: 117085 agctcattccaggagtcgggtactccagggaggcaccagtggctgcagtc 117134
>gb|AF109220.1|AF109220 Ramalina culbersoniorum strain 5a 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 25S ribosomal RNA gene, partial sequence Length = 527 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 tcgggcacgccggggaggcacc 344 |||||||||||||||||||||| Sbjct: 383 tcgggcacgccggggaggcacc 362
>dbj|AK071479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093O16, full insert sequence Length = 2028 Score = 44.1 bits (22), Expect = 0.42 Identities = 46/54 (85%) Strand = Plus / Minus Query: 335 gggaggcaccagtgggtgcagtcggcgtagctcttggggtcggcgagctgctcc 388 ||||||||||| || ||||| || ||||||||||| |||| |||| ||||||| Sbjct: 1571 gggaggcaccaatgcgtgcaatccgcgtagctcttcgggttcgcgatctgctcc 1518
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 tcggcgtagctcttggggtcg 376 ||||||||||||||||||||| Sbjct: 1016980 tcggcgtagctcttggggtcg 1016960
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 gctcttggggtcggcgagctg 384 ||||||||||||||||||||| Sbjct: 1932529 gctcttggggtcggcgagctg 1932549
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4244239 cctggtcgctggccgggaag 4244258
>ref|NM_188463.1| Oryza sativa (japonica cultivar-group), Ozsa8158 predicted mRNA Length = 1353 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 gccggggaggcaccagtgggtgcagtcg 358 ||||| || ||||||||||||||||||| Sbjct: 1299 gccggcgacgcaccagtgggtgcagtcg 1272
>gb|AC104281.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1537_B05, complete sequence Length = 129890 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 310 ctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||| |||| || || |||||||||||| ||||||| Sbjct: 56529 ctcgttccatgtgtctggcaacccaggtaggcaccagtggatgcagtc 56576
>gb|BT017395.1| Zea mays clone EL01N0328B07.c mRNA sequence Length = 1004 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 gggaggcaccagtgggtgcagtcg 358 ||||||||||||||| |||||||| Sbjct: 779 gggaggcaccagtggatgcagtcg 756
>gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, complete sequence Length = 228206 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cagggaacacacatttgatc 149 |||||||||||||||||||| Sbjct: 117369 cagggaacacacatttgatc 117350
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4755438 cctggtcgctggccgggaag 4755457
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4472310 cctggtcgctggccgggaag 4472329
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4224708 cctggtcgctggccgggaag 4224727
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 40.1 bits (20), Expect = 6.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 303 acagcagctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgca 354 |||||||||| ||||||| || ||||| || || |||||||||||| |||| Sbjct: 57454 acagcagctcattccatgtatctggcactccaggaaggcaccagtggctgca 57505
>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes Length = 176195 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 91927 cctggtcgctggccgggaag 91946
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4230275 cctggtcgctggccgggaag 4230294
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 3527982 cctggtcgctggccgggaag 3527963
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 331 gccggggaggcaccagtgggtgcagtcg 358 ||||| || ||||||||||||||||||| Sbjct: 9449 gccggcgacgcaccagtgggtgcagtcg 9476
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 331 gccggggaggcaccagtgggtgcagtcg 358 ||||| || ||||||||||||||||||| Sbjct: 158120 gccggcgacgcaccagtgggtgcagtcg 158147
>emb|X16584.1|ECMTHM E. coli metH gene for 5-Methyltetrahydrofolate-homocysteine (vitamin B12) methyltransferase (E.C. 2.1.1.13) Length = 4098 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 3080 cctggtcgctggccgggaag 3099
>dbj|AK105803.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B01, full insert sequence Length = 1391 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 gccggggaggcaccagtgggtgcagtcg 358 ||||| || ||||||||||||||||||| Sbjct: 1197 gccggcgacgcaccagtgggtgcagtcg 1170
>dbj|AK070775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072A02, full insert sequence Length = 1654 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 331 gccggggaggcaccagtgggtgcagtcg 358 ||||| || ||||||||||||||||||| Sbjct: 1291 gccggcgacgcaccagtgggtgcagtcg 1264
>dbj|AK065144.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A20, full insert sequence Length = 2212 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 310 ctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||| |||| || || |||||||||||| ||||||| Sbjct: 1721 ctcgttccatgtgtctggcaacccaggtaggcaccagtggatgcagtc 1674
>dbj|AK061810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A11, full insert sequence Length = 983 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 310 ctcgttccatgcgtcgggcacgccggggaggcaccagtgggtgcagtc 357 ||||||||||| ||| |||| || || |||||||||||| ||||||| Sbjct: 492 ctcgttccatgtgtctggcaacccaggtaggcaccagtggatgcagtc 445
>gb|AY108652.1| Zea mays PCO078358 mRNA sequence Length = 347 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 gggaggcaccagtgggtgcagtcg 358 ||||||||||||||| |||||||| Sbjct: 152 gggaggcaccagtggatgcagtcg 129
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 5103831 cctggtcgctggccgggaag 5103850
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 5035086 cctggtcgctggccgggaag 5035105
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4049648 cctggtcgctggccgggaag 4049629
>gb|DQ272318.1| Escherichia coli strain B834 cobalamin-dependent homocysteine transmethylase (metH) gene, complete cds Length = 4153 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 3118 cctggtcgctggccgggaag 3137
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4083325 cctggtcgctggccgggaag 4083344
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 4442155 cctggtcgctggccgggaag 4442174
>gb|J04975.1|ECOMETH E.coli methionine synthase (metH) gene, complete cds Length = 4097 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctggtcgctggccgggaag 289 |||||||||||||||||||| Sbjct: 3080 cctggtcgctggccgggaag 3099 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,765,244 Number of Sequences: 3902068 Number of extensions: 2765244 Number of successful extensions: 50894 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50119 Number of HSP's gapped (non-prelim): 760 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
