ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC ... 60 4e-09
2YAE9_YEAST (P39721) Protein YAL049C 48 1e-05
3YACK_RHIME (Q9X447) Hypothetical 80.6 kDa protein in ackA 5'regi... 33 0.41
4METX_CARHZ (Q3AAW2) Homoserine O-acetyltransferase (EC 2.3.1.31)... 30 3.5
5Y1205_HAEIN (P44127) UPF0208 membrane protein HI1205 30 3.5
6MATK_NYMAL (Q6EW67) Maturase K (Intron maturase) 29 6.0
7MATK_EURFE (O98639) Maturase K (Intron maturase) 29 6.0
8MATK_NYMOD (O98637) Maturase K (Intron maturase) 29 6.0

>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)|
          Length = 303

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = -1

Query: 496 HPSAVTTDDMKEIKSPIEILGAENDAVTPPALVDQLVETLHQRNQIQY 353
           HP +VT DDMKE+K PIEILGA+ND  TPP  V + V  L +R+++ +
Sbjct: 174 HPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPF 221



to top

>YAE9_YEAST (P39721) Protein YAL049C|
          Length = 246

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = -1

Query: 496 HPSAVTTDDMKEI--KSPIEILGAENDAVTPPALVDQLVETLHQRNQIQYYAKIFPEVAH 323
           HPS V+ ++++ I  K PI I  AE D + P A +  L E   + N   Y   +F  VAH
Sbjct: 154 HPSFVSIEEIEAIDSKKPILISAAEEDHIFP-ANLRHLTEEKLKDNHATYQLDLFSGVAH 212

Query: 322 GFACRYNVTNPFAVKTAEQALGLMLGWFHKY 230
           GFA R +++ P      E+ L   + WF+ +
Sbjct: 213 GFAARGDISIPAVKYAKEKVLLDQIYWFNHF 243



to top

>YACK_RHIME (Q9X447) Hypothetical 80.6 kDa protein in ackA 5'region (ORFA)|
          Length = 733

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 481 TTDDMKEIKSPIEILGAENDAVTPPALVDQLVETLH 374
           TT DM+ I+SPI +  ++ D +TPPA     +  LH
Sbjct: 311 TTIDMRNIRSPIVVFCSKGDNITPPAQALDWILDLH 346



to top

>METX_CARHZ (Q3AAW2) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 379

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 469 MKEIKSPIEILGAENDAVTPPALVDQLVETLHQRNQIQYYAKIFPEVAH-GFACRYNVTN 293
           +KE+K+P+  +G + D + P     ++VE L +  +  YY ++     H  F   ++   
Sbjct: 301 LKELKTPLLAIGIDTDFLYPTYQQKEIVEALKEAKKEAYYWELSSPHGHDAFLIEFSKMA 360

Query: 292 PFAVKTAEQALG 257
           P      E   G
Sbjct: 361 PILSNFLEYVAG 372



to top

>Y1205_HAEIN (P44127) UPF0208 membrane protein HI1205|
          Length = 147

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 126 IWLQYVCFTL*SLHIAMPFIQNNARDLSLSEIMKK 22
           +W   +C  L  LH  +PF+Q       L+E++KK
Sbjct: 100 VWFYDICERLKQLHEPLPFVQEKPTYQHLAEVLKK 134



to top

>MATK_NYMAL (Q6EW67) Maturase K (Intron maturase)|
          Length = 507

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
 Frame = -1

Query: 451 PIEILGAENDAVTPPALVDQLVETLHQRNQI--------------QYYAKIFPEVAHGFA 314
           P E LG +ND  +   +V +L+  LHQ+N +               +Y++  PE   GFA
Sbjct: 49  PTENLGYDNDNKSSSLIVKRLITRLHQQNHLTISVNDSRFVGPNRSFYSQTIPE---GFA 105

Query: 313 CRYNVTNPFAVK 278
               +  PF+V+
Sbjct: 106 GIMEI--PFSVR 115



to top

>MATK_EURFE (O98639) Maturase K (Intron maturase)|
          Length = 507

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
 Frame = -1

Query: 451 PIEILGAENDAVTPPALVDQLVETLHQRNQI--------------QYYAKIFPEVAHGFA 314
           P E LG +ND  +   +V +L+  LHQ+N +               +Y++  PE   GFA
Sbjct: 49  PTENLGYDNDNKSSSLIVKRLITRLHQQNHLTISVNDSRFVGPNRSFYSQTIPE---GFA 105

Query: 313 CRYNVTNPFAVK 278
               +  PF+V+
Sbjct: 106 GIMEI--PFSVR 115



to top

>MATK_NYMOD (O98637) Maturase K (Intron maturase)|
          Length = 509

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
 Frame = -1

Query: 451 PIEILGAENDAVTPPALVDQLVETLHQRNQI--------------QYYAKIFPEVAHGFA 314
           P E LG +ND  +   +V +L+  LHQ+N +               +Y++  PE   GFA
Sbjct: 49  PTENLGYDNDNKSSSLIVKRLITRLHQQNHLTISVNDSRFVGPNRSFYSQTIPE---GFA 105

Query: 313 CRYNVTNPFAVK 278
               +  PF+V+
Sbjct: 106 GIMEI--PFSVR 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,613,180
Number of Sequences: 219361
Number of extensions: 1459102
Number of successful extensions: 4151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4151
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top