ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SECA_GUITH (O78441) Preprotein translocase secA subunit 32 0.77
2FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Pepti... 31 2.2
3DAXX_CERAE (O18805) Death domain-associated protein 6 (Daxx) 30 2.9
4DAXX_HUMAN (Q9UER7) Death domain-associated protein 6 (Daxx) (hD... 30 2.9
5LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Le... 30 2.9
6ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2... 30 5.0
7DAXX_CANFA (Q5TJE1) Death domain-associated protein 6 (Daxx) 29 6.5
8SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 29 6.5
9TRI41_HUMAN (Q8WV44) Tripartite motif protein 41 29 8.5
10AGL11_ARATH (Q38836) Agamous-like MADS-box protein AGL11 29 8.5
11MURI_FUSNN (Q8REE6) Glutamate racemase (EC 5.1.1.3) 29 8.5

>SECA_GUITH (O78441) Preprotein translocase secA subunit|
          Length = 877

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 27/65 (41%), Positives = 33/65 (50%)
 Frame = +1

Query: 1   NRDGPVLIRTTSDNKTKLLEKHSCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALH 180
           N   PVLI TTS  K++LL      Y +P   N L  KP+   NV+ EA+I    GR   
Sbjct: 424 NLGRPVLIGTTSVEKSELLSSLLKEYGVP--HNLLNAKPE---NVQREAEIVAQAGRLGA 478

Query: 181 VTHRT 195
           VT  T
Sbjct: 479 VTIAT 483



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>FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 437

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 502 EEEEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENE 395
           EE E     + ++E  K+K  +  H HHH HD +++
Sbjct: 240 EEIEASEEEESEEEEKKSKHKKHDHHHHHDHDHDHD 275



 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 508 DAEEEEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEELARK 365
           +A EEEE    + K +  K       H HHH HD +++ D   +   K
Sbjct: 243 EASEEEESEEEEKKSKHKK-------HDHHHHHDHDHDHDHEHKSKNK 283



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>DAXX_CERAE (O18805) Death domain-associated protein 6 (Daxx)|
          Length = 736

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 508 DAEEEEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEELARKLGE 356
           +++EEEE+   ++++E T  +      Q     + + E +E EE A K G+
Sbjct: 442 ESDEEEEEEEEEEEEEATDFEEEEDLEQMQEGQEDDEEEEEEEEAAGKDGD 492



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>DAXX_HUMAN (Q9UER7) Death domain-associated protein 6 (Daxx) (hDaxx) (Fas|
           death domain-associated protein) (ETS1-associated
           protein 1) (EAP1)
          Length = 740

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 508 DAEEEEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEELA 371
           +++EEEE+   ++++E T ++      Q     + + E DE EE A
Sbjct: 442 ESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAA 487



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>LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Legumin B|
           acidic chain); Legumin B beta chain (Legumin B basic
           chain)] (Fragment)
          Length = 338

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 508 DAEEEEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEE 377
           + +EEEE  H Q K+E  + +  R  H+ H   + E+E +E EE
Sbjct: 50  ELQEEEEQSHSQRKEEEEEEQEQR--HRKHSKKEDEDEDEEEEE 91



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>ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 20) (DHHC-20)
          Length = 380

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 200 CCVRCVTWSALPFPTFIFASYSTLHYHLGLCVSLFVRVG 84
           CC R V W  + F TF+   +S   Y + LCVS   R G
Sbjct: 9   CCQRVVGWVPVLFITFVVV-WSYYAYVVELCVSTISRTG 46



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>DAXX_CANFA (Q5TJE1) Death domain-associated protein 6 (Daxx)|
          Length = 737

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 508 DAEEEEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEELARKLGE 356
           ++EEEEE+   ++++E T ++      Q       + E +E EE A + G+
Sbjct: 442 ESEEEEEEEEEEEEEEATDSEEEEDLEQMQEGQGDDEEEEEEEEEAGQDGD 492



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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 496 EEEDGHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEE 377
           EEE+    D DEG   +  R     H  H  E + D+ +E
Sbjct: 260 EEEEDEEDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDE 299



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>TRI41_HUMAN (Q8WV44) Tripartite motif protein 41|
          Length = 630

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 508 DAEEEEEDGHRQDKDE-GTKAKLFRRFHQHHHAHDSENEVDEVEE 377
           D EEEEEDG  ++ +  G  A          +  D E EV+E EE
Sbjct: 60  DREEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEVEEEEE 104



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>AGL11_ARATH (Q38836) Agamous-like MADS-box protein AGL11|
          Length = 230

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 457 TKAKLFRRFHQHHHAHDSENEVDEVEELARK 365
           TK     R+ QHHH   S +E++ +E LA +
Sbjct: 169 TKVAEVERYQQHHHQMVSGSEINAIEALASR 199



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>MURI_FUSNN (Q8REE6) Glutamate racemase (EC 5.1.1.3)|
          Length = 264

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 31  TSDNKTKLLEKH--SCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALHVTHRTQQ 201
           T DN+ +LL K+    P N  TL    TH P    ++E   KIKV +  A+ +  RT Q
Sbjct: 160 TFDNRKELLNKYLSEIPKNADTLVLGCTHYPLIREDIEKNIKIKVVD-PAVEIVERTIQ 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,142,765
Number of Sequences: 219361
Number of extensions: 1091589
Number of successful extensions: 4734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4535
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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