ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27d07 |
|---|---|
| Clone Library Name | barley_pub |
>CO8A_MOUSE (Q8K182) Complement component C8 alpha chain precursor (Complement| component 8 alpha subunit) Length = 587 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 337 PVVLLRDIRCGSSF--RNPGEHLKS-MVINGDQECISGS 444 P LR +CG F R G LK +V NGD +C+ GS Sbjct: 87 PTPCLRQAQCGQDFQCRETGRCLKRHLVCNGDNDCLDGS 125
>TOK1_YEAST (P40310) Outward-rectifier potassium channel TOK1 (Two-domain| outward rectifier K(+) channel YORK) Length = 691 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -2 Query: 399 EVLARVPERATAPDVPQQYHWKEFRFTFKEAVKDVEEFCRMLVELEE 259 E R PE +PD P ++ E F F K++EE LVE EE Sbjct: 627 EEYTRGPEFWISPDTPLKFPLNEPHFAFMMLFKNIEELVGNLVEDEE 673
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +1 Query: 49 ENDGDIQT*LLILNRMMSFYNANHLQNRIQVIFFR*SIIITEDLNLVPFGLRKVS 213 E DG I T LL LN ++FYN I ++ I+ T D+ + G VS Sbjct: 1223 EADGSITTDLLTLNGDVTFYNNGDFTGSIAGTSYQQEIVNTGDMTVAEDGKSLVS 1277
>CO8A_HUMAN (P07357) Complement component C8 alpha chain precursor (Complement| component 8 alpha subunit) Length = 584 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = +1 Query: 349 LRDIRCGSSF--RNPGEHLKS-MVINGDQECISGS 444 +R +CG F + G LK +V NGDQ+C+ GS Sbjct: 91 VRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGS 125
>YH25_SCHPO (O74338) Protein C1A4.05 in chromosome II| Length = 700 Score = 29.6 bits (65), Expect = 5.0 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 4/116 (3%) Frame = -2 Query: 459 EYFDVTARDALLVSIDHHGFEVLARVPERATAPDVPQQYHWKEFRFTFKEAVKDV-EEFC 283 +YF+V+ +D LL S++ E + + R D P HW E FKE ++ E F Sbjct: 196 QYFNVS-KDKLL-SLE----ESIKLLSARLEETDTPSSTHWIEINAGFKEVGDELSENFQ 249 Query: 282 R---MLVELEEEALHSVKSYSGLG*KRYLSQTKGHKIQIFSYDNRSSKEYNLNSIL 124 R +L L+ + + +G S G + Q+ S D ++Y LNS+L Sbjct: 250 RKQEILSGLQNNVILRTNNRKPVGSDGSNSNFNGGEEQMDSKDQEEIQDY-LNSLL 304
>RL1_WIGBR (Q8D236) 50S ribosomal protein L1| Length = 242 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +1 Query: 82 ILNRMMSFYNANHLQNRIQVIFFR*SIIITEDLNLVPFGLRKVSLST 222 I++ + N N+L+ +I +++F ++ T+ NL ++KVSLST Sbjct: 171 IIHTTIGKINFNNLELKINLLYFLNHLVKTKPTNLKGVFIKKVSLST 217
>CO8A_RABIT (P98136) Complement component C8 alpha chain precursor (Complement| component 8 alpha subunit) Length = 585 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 337 PVVLLRDIRCGSSF--RNPGEHLKS-MVINGDQECISGS 444 P LR +CG F + G LK +V NG+ +C+ GS Sbjct: 87 PTACLRPAQCGQDFQCKETGRCLKRHLVCNGENDCLDGS 125
>ILVB_PORUM (P69684) Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase large subunit) (ALS) Length = 590 Score = 29.3 bits (64), Expect = 6.5 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = -2 Query: 444 TARDALLVSIDHHGFEVLARVPERATAPDVPQQYHWKEFRFTFKEAVKDVEEFCRMLVEL 265 T R ALL SI HG + P A P + Y W+E +K++ LV Sbjct: 12 TGRFALLDSIVRHGVIHIFGYPGGAILPIYDELYAWEEL-----SLIKNI------LVRH 60 Query: 264 EEEALHSVKSYS 229 E+ A H+ +YS Sbjct: 61 EQGASHAADAYS 72
>ILVB_PORPU (P69683) Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase large subunit) (ALS) Length = 590 Score = 29.3 bits (64), Expect = 6.5 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = -2 Query: 444 TARDALLVSIDHHGFEVLARVPERATAPDVPQQYHWKEFRFTFKEAVKDVEEFCRMLVEL 265 T R ALL SI HG + P A P + Y W+E +K++ LV Sbjct: 12 TGRFALLDSIVRHGVIHIFGYPGGAILPIYDELYAWEEL-----SLIKNI------LVRH 60 Query: 264 EEEALHSVKSYS 229 E+ A H+ +YS Sbjct: 61 EQGASHAADAYS 72
>RPOB_CHLCH (Q3ATP5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1300 Score = 29.3 bits (64), Expect = 6.5 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -2 Query: 408 HGFEVLARVPERATAPDVPQQYHWKEFRFTFKEAVKDVEEFCRMLVELEEEALHSV 241 + FE + ER DV H EF ++ + E+F R + + EEAL ++ Sbjct: 801 YNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEEALRNL 856
>RPOBC_HELPJ (Q9ZK23) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2890 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = -2 Query: 408 HGFEVLARVPERATAPDVPQQYHWKEFRFTFKEAVKDVEEFCRMLVELEEEAL 250 + FE V ER T DV H E +E VEEF + +++EEAL Sbjct: 820 YNFEDAIVVSERITKDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEAL 872 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,491,991 Number of Sequences: 219361 Number of extensions: 1322595 Number of successful extensions: 3546 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3546 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
