ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 5e-44
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 133 6e-28
3gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 133 6e-28
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
5gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare str... 133 6e-28
6gb|AY109099.1| Zea mays PCO085724 mRNA sequence 92 2e-15
7gb|AC023669.8| Homo sapiens BAC clone RP11-432O19 from 7, comple... 46 0.11
8gb|AC027700.11| Mus musculus chromosome 10, clone RP23-145G7, co... 44 0.44
9emb|CR352244.8| Zebrafish DNA sequence from clone CH211-131E11 i... 42 1.7
10dbj|AP006436.1| Sus scrofa CC chemokine receptor genes(CCR3, CCR... 42 1.7
11gb|AC007564.10| Homo sapiens 12 BAC RP11-513P18 (Roswell Park Ca... 42 1.7
12gb|L43967.2| Mycoplasma genitalium G37, complete genome 42 1.7
13gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 6.9
14gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, comp... 40 6.9
15emb|CR847924.7| Zebrafish DNA sequence from clone CH211-261H11 i... 40 6.9
16gb|AC122333.2| Mus musculus BAC clone RP23-346J12 from chromosom... 40 6.9
17gb|AC006026.2| Homo sapiens BAC clone GS1-96J14 from 7, complete... 40 6.9
18gb|AY305519.1| Paralamyctes sp. JCR-2003 elongation factor-2 mRN... 40 6.9
19gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Ho... 40 6.9
20gb|AC018931.9| Homo sapiens chromosome 18, clone RP11-418K9, com... 40 6.9
21gb|AC107979.7| Homo sapiens chromosome 15, clone CTD-3049M7, com... 40 6.9
22emb|BX276108.6| Zebrafish DNA sequence from clone CH211-265M17 i... 40 6.9
23gb|AC090762.9| Homo sapiens chromosome 15, clone RP11-387E8, com... 40 6.9
24gb|AC091980.4| Homo sapiens chromosome 5 clone RP11-546B8, compl... 40 6.9
25ref|XM_694528.1| PREDICTED: Danio rerio similar to Rotavirus X a... 40 6.9
26gb|AF319167.1|AF319167 Prunus persica unknown mRNA, partial cds 40 6.9
27gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 40 6.9
28gb|AC129887.3| Atelerix albiventris clone LB4-416G11, complete s... 40 6.9
29gb|AF332579.1|AF332579 Mus musculus small nuclear ribonucleoprot... 40 6.9
30ref|NM_066360.2| Caenorhabditis elegans DiCer Related family mem... 40 6.9
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
32gb|AC154574.2| Mus musculus BAC clone RP23-399K3 from chromosome... 40 6.9
33gb|L14331.1| Caenorhabditis elegans cosmid K12H4, complete sequence 40 6.9
34dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
35emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 i... 40 6.9
36emb|BX469899.6| Zebrafish DNA sequence from clone CH211-155K24 i... 40 6.9
37gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p2... 40 6.9
38emb|BX005313.4| Zebrafish DNA sequence from clone CH211-119C24, ... 40 6.9
39emb|CR392338.16| Zebrafish DNA sequence from clone DKEY-262M9 in... 40 6.9
40gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosom... 40 6.9 
>dbj|AK066437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067M23, full
            insert sequence
          Length = 1304

 Score =  186 bits (94), Expect = 5e-44
 Identities = 237/282 (84%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                        
Query: 227  ccgctatagctctttacgctgtgcagagcttcttcttctagctcgaccaacatgcggcag 286
            |||||||||||||| |  || || |||||||||||||||| ||| |||||||||||||||
Sbjct: 1165 ccgctatagctcttcatactctggagagcttcttcttctaactcaaccaacatgcggcag 1106

                                                                        
Query: 287  aattcctcaacatccttaactgcttccttgaatgtgaacctgaactctttccagtggtat 346
            || ||||||| ||||||  | ||||| |||||||  |||||||||||| |||||  ||| 
Sbjct: 1105 aagtcctcaatatccttggcagcttctttgaatgaaaacctgaactctctccagacgtac 1046

                                                                        
Query: 347  tgctgagggacatca-ggtgcggtagctctttcaggaaccctggcgagcacctcaaatcc 405
            ||  | ||||||||| || ||  | ||| ||||||| ||| |||||||||| ||||||||
Sbjct: 1045 tgtcgtgggacatcaaggagcact-gctttttcagggaccttggcgagcacatcaaatcc 987

                                                                        
Query: 406  atggtgatcaatggagaccaagagtgcatctctggcagtcacatcaaaatactcaaaaca 465
            |||||||||||| |||| ||||||||| ||  | ||||| |||| ||||||||| || ||
Sbjct: 986  atggtgatcaatagagagcaagagtgcgtccgttgcagtgacattaaaatactcgaagca 927

                                                      
Query: 466  gaaaagtataagtgctctccgccttgggtcactcctgttgat 507
            |||||  |||||||||||||| ||||||||||||| ||||||
Sbjct: 926  gaaaaagataagtgctctccgtcttgggtcactccggttgat 885
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  133 bits (67), Expect = 6e-28
 Identities = 174/207 (84%), Gaps = 2/207 (0%)
 Strand = Plus / Plus

                                                                           
Query: 227     ccgctatagctctttacgctgtgcagagcttcttcttctagctcgaccaacatgcggcag 286
               |||||||||||||| |  || || |||||||||||||||| ||| |||||||||||||||
Sbjct: 9345504 ccgctatagctcttcatactctggagagcttcttcttctaactcaaccaacatgcggcag 9345563

                                                                           
Query: 287     aattcctcaacatccttaactgcttccttgaatgtgaacctgaactctttccagtggtat 346
               || ||||||| ||||||  | ||||| |||||||  |||||||||||| |||||  ||| 
Sbjct: 9345564 aagtcctcaatatccttggcagcttctttgaatgaaaacctgaactctctccagacgtac 9345623

                                                                           
Query: 347     tgctgagggacatc-aggtgcggtagctctttcaggaaccctggcgagcacctcaaatcc 405
               ||  | |||||||| ||| ||  | ||| ||||||| ||| |||||||||| ||||||||
Sbjct: 9345624 tgtcgtgggacatcaaggagcact-gctttttcagggaccttggcgagcacatcaaatcc 9345682

                                          
Query: 406     atggtgatcaatggagaccaagagtgc 432
               |||||||||||| |||| |||||||||
Sbjct: 9345683 atggtgatcaatagagagcaagagtgc 9345709



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                           
Query: 440     gcagtcacatcaaaatactcaaaacagaaaagtataagtgctctccgccttgggtcactc 499
               ||||| |||| ||||||||| || |||||||  |||||||||||||| ||||||||||||
Sbjct: 9345891 gcagtgacattaaaatactcgaagcagaaaaagataagtgctctccgtcttgggtcactc 9345950

                       
Query: 500     ctgttgat 507
               | ||||||
Sbjct: 9345951 cggttgat 9345958
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score =  133 bits (67), Expect = 6e-28
 Identities = 174/207 (84%), Gaps = 2/207 (0%)
 Strand = Plus / Plus

                                                                         
Query: 227   ccgctatagctctttacgctgtgcagagcttcttcttctagctcgaccaacatgcggcag 286
             |||||||||||||| |  || || |||||||||||||||| ||| |||||||||||||||
Sbjct: 42904 ccgctatagctcttcatactctggagagcttcttcttctaactcaaccaacatgcggcag 42963

                                                                         
Query: 287   aattcctcaacatccttaactgcttccttgaatgtgaacctgaactctttccagtggtat 346
             || ||||||| ||||||  | ||||| |||||||  |||||||||||| |||||  ||| 
Sbjct: 42964 aagtcctcaatatccttggcagcttctttgaatgaaaacctgaactctctccagacgtac 43023

                                                                         
Query: 347   tgctgagggacatc-aggtgcggtagctctttcaggaaccctggcgagcacctcaaatcc 405
             ||  | |||||||| ||| ||  | ||| ||||||| ||| |||||||||| ||||||||
Sbjct: 43024 tgtcgtgggacatcaaggagcact-gctttttcagggaccttggcgagcacatcaaatcc 43082

                                        
Query: 406   atggtgatcaatggagaccaagagtgc 432
             |||||||||||| |||| |||||||||
Sbjct: 43083 atggtgatcaatagagagcaagagtgc 43109



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 440   gcagtcacatcaaaatactcaaaacagaaaagtataagtgctctccgccttgggtcactc 499
             ||||| |||| ||||||||| || |||||||  |||||||||||||| ||||||||||||
Sbjct: 43291 gcagtgacattaaaatactcgaagcagaaaaagataagtgctctccgtcttgggtcactc 43350

                     
Query: 500   ctgttgat 507
             | ||||||
Sbjct: 43351 cggttgat 43358
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  133 bits (67), Expect = 6e-28
 Identities = 174/207 (84%), Gaps = 2/207 (0%)
 Strand = Plus / Plus

                                                                           
Query: 227     ccgctatagctctttacgctgtgcagagcttcttcttctagctcgaccaacatgcggcag 286
               |||||||||||||| |  || || |||||||||||||||| ||| |||||||||||||||
Sbjct: 9343625 ccgctatagctcttcatactctggagagcttcttcttctaactcaaccaacatgcggcag 9343684

                                                                           
Query: 287     aattcctcaacatccttaactgcttccttgaatgtgaacctgaactctttccagtggtat 346
               || ||||||| ||||||  | ||||| |||||||  |||||||||||| |||||  ||| 
Sbjct: 9343685 aagtcctcaatatccttggcagcttctttgaatgaaaacctgaactctctccagacgtac 9343744

                                                                           
Query: 347     tgctgagggacatc-aggtgcggtagctctttcaggaaccctggcgagcacctcaaatcc 405
               ||  | |||||||| ||| ||  | ||| ||||||| ||| |||||||||| ||||||||
Sbjct: 9343745 tgtcgtgggacatcaaggagcact-gctttttcagggaccttggcgagcacatcaaatcc 9343803

                                          
Query: 406     atggtgatcaatggagaccaagagtgc 432
               |||||||||||| |||| |||||||||
Sbjct: 9343804 atggtgatcaatagagagcaagagtgc 9343830



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                           
Query: 440     gcagtcacatcaaaatactcaaaacagaaaagtataagtgctctccgccttgggtcactc 499
               ||||| |||| ||||||||| || |||||||  |||||||||||||| ||||||||||||
Sbjct: 9344012 gcagtgacattaaaatactcgaagcagaaaaagataagtgctctccgtcttgggtcactc 9344071

                       
Query: 500     ctgttgat 507
               | ||||||
Sbjct: 9344072 cggttgat 9344079
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>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0014A21, from chromosome 3, complete sequence
          Length = 134014

 Score =  133 bits (67), Expect = 6e-28
 Identities = 174/207 (84%), Gaps = 2/207 (0%)
 Strand = Plus / Minus

                                                                         
Query: 227   ccgctatagctctttacgctgtgcagagcttcttcttctagctcgaccaacatgcggcag 286
             |||||||||||||| |  || || |||||||||||||||| ||| |||||||||||||||
Sbjct: 10461 ccgctatagctcttcatactctggagagcttcttcttctaactcaaccaacatgcggcag 10402

                                                                         
Query: 287   aattcctcaacatccttaactgcttccttgaatgtgaacctgaactctttccagtggtat 346
             || ||||||| ||||||  | ||||| |||||||  |||||||||||| |||||  ||| 
Sbjct: 10401 aagtcctcaatatccttggcagcttctttgaatgaaaacctgaactctctccagacgtac 10342

                                                                         
Query: 347   tgctgagggacatc-aggtgcggtagctctttcaggaaccctggcgagcacctcaaatcc 405
             ||  | |||||||| ||| ||  | ||| ||||||| ||| |||||||||| ||||||||
Sbjct: 10341 tgtcgtgggacatcaaggagcact-gctttttcagggaccttggcgagcacatcaaatcc 10283

                                        
Query: 406   atggtgatcaatggagaccaagagtgc 432
             |||||||||||| |||| |||||||||
Sbjct: 10282 atggtgatcaatagagagcaagagtgc 10256



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 440   gcagtcacatcaaaatactcaaaacagaaaagtataagtgctctccgccttgggtcactc 499
             ||||| |||| ||||||||| || |||||||  |||||||||||||| ||||||||||||
Sbjct: 10074 gcagtgacattaaaatactcgaagcagaaaaagataagtgctctccgtcttgggtcactc 10015

                     
Query: 500   ctgttgat 507
             | ||||||
Sbjct: 10014 cggttgat 10007
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>gb|AY109099.1| Zea mays PCO085724 mRNA sequence
          Length = 1033

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                       
Query: 227 ccgctatagctctttacgctgtgcagagcttcttcttctagctcgaccaacatgcggcag 286
           |||||| ||||||| ||| | |||| | | ||||| |||| | | |||| ||||||||||
Sbjct: 733 ccgctacagctcttcacggtctgcaaaccctcttcctctaacccaaccagcatgcggcag 674

                                                                       
Query: 287 aattcctcaacatccttaactgcttccttgaatgtgaacctgaactctttccagtggtat 346
           || |||||| |||||||  | | |||||||||||||||||||||||| ||||||||||||
Sbjct: 673 aagtcctcagcatccttggcaggttccttgaatgtgaacctgaactccttccagtggtat 614

             
Query: 347 tg 348
           ||
Sbjct: 613 tg 612



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 272 accaacatgcggcagaattcctcaacatccttaactgcttccttgaatgtgaacct 327
           |||| ||||||||||| | ||||| |||||||  ||| ||||||||||||||||||
Sbjct: 811 accagcatgcggcagagt-cctcagcatccttggctggttccttgaatgtgaacct 757
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>gb|AC023669.8| Homo sapiens BAC clone RP11-432O19 from 7, complete sequence
          Length = 207806

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 296    acatccttaactgcttccttgaatgtg 322
              ||||||||||||||||||||| |||||
Sbjct: 130506 acatccttaactgcttccttgtatgtg 130532
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>gb|AC027700.11| Mus musculus chromosome 10, clone RP23-145G7, complete sequence
          Length = 227454

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 93    aatgatgtcattttacaatgca 114
             ||||||||||||||||||||||
Sbjct: 51721 aatgatgtcattttacaatgca 51742
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>emb|CR352244.8| Zebrafish DNA sequence from clone CH211-131E11 in linkage group 2,
            complete sequence
          Length = 160001

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 421  gaccaagagtgcatctctggc 441
            |||||||||||||||||||||
Sbjct: 3102 gaccaagagtgcatctctggc 3082
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>dbj|AP006436.1| Sus scrofa CC chemokine receptor genes(CCR3, CCR1, CCXCR1, FYCO1),
            complete and partial cds, clone: 0659A02
          Length = 167298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 141  tatattctttagatgatctat 161
            |||||||||||||||||||||
Sbjct: 9484 tatattctttagatgatctat 9464
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>gb|AC007564.10| Homo sapiens 12 BAC RP11-513P18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 194397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 15    tttctgatatgtaaaaaagtacaaa 39
             ||||| |||||||||||||||||||
Sbjct: 78506 tttctcatatgtaaaaaagtacaaa 78530
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>gb|L43967.2| Mycoplasma genitalium G37, complete genome
          Length = 580076

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 113    caaaccatctacaaaatcgaattcaagtt 141
              ||||||||||| |||||| ||||||||||
Sbjct: 326126 caaaccatctaaaaaatcaaattcaagtt 326098
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     aattcaagttatattcttta 151
               ||||||||||||||||||||
Sbjct: 3797745 aattcaagttatattcttta 3797764
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>gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, complete sequence
          Length = 206433

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttctgatatgtaaaaaagta 35
             ||||||||||||||||||||
Sbjct: 91189 ttctgatatgtaaaaaagta 91170
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>emb|CR847924.7| Zebrafish DNA sequence from clone CH211-261H11 in linkage group 18,
             complete sequence
          Length = 150088

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 361   aggtgcggtagctctttcaggaac 384
             |||||| |||||||||||||||||
Sbjct: 64092 aggtgcagtagctctttcaggaac 64115
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>gb|AC122333.2| Mus musculus BAC clone RP23-346J12 from chromosome 6, complete sequence
          Length = 174665

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    acctaactgttgattctcaa 89
             ||||||||||||||||||||
Sbjct: 94221 acctaactgttgattctcaa 94240
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>gb|AC006026.2| Homo sapiens BAC clone GS1-96J14 from 7, complete sequence
          Length = 149869

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   ccaagagtgcatctctggca 442
             ||||||||||||||||||||
Sbjct: 80951 ccaagagtgcatctctggca 80932
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>gb|AY305519.1| Paralamyctes sp. JCR-2003 elongation factor-2 mRNA, partial cds
          Length = 2182

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 432  catctctggcagtcacatca 451
            ||||||||||||||||||||
Sbjct: 1820 catctctggcagtcacatca 1801
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>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 217690

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 448    atcaaaatactcaaaacagaaaag 471
              |||||||||| |||||||||||||
Sbjct: 115829 atcaaaatacccaaaacagaaaag 115806
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>gb|AC018931.9| Homo sapiens chromosome 18, clone RP11-418K9, complete sequence
          Length = 185117

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    tttgagaaaggtatctctttcaac 221
              |||||| |||||||||||||||||
Sbjct: 164135 tttgagtaaggtatctctttcaac 164112
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>gb|AC107979.7| Homo sapiens chromosome 15, clone CTD-3049M7, complete sequence
          Length = 148290

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    acaaaacacaggctgaaaat 54
             ||||||||||||||||||||
Sbjct: 76047 acaaaacacaggctgaaaat 76028
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>emb|BX276108.6| Zebrafish DNA sequence from clone CH211-265M17 in linkage group 24,
             complete sequence
          Length = 144165

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    atatgtaaaaaagtacaaaacaca 44
             |||| |||||||||||||||||||
Sbjct: 77979 atatctaaaaaagtacaaaacaca 78002
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>gb|AC090762.9| Homo sapiens chromosome 15, clone RP11-387E8, complete sequence
          Length = 192826

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acaaaacacaggctgaaaat 54
              ||||||||||||||||||||
Sbjct: 182486 acaaaacacaggctgaaaat 182467
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>gb|AC091980.4| Homo sapiens chromosome 5 clone RP11-546B8, complete sequence
          Length = 153133

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    gaatgatgtcattttacaat 111
             ||||||||||||||||||||
Sbjct: 26726 gaatgatgtcattttacaat 26745
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>ref|XM_694528.1| PREDICTED: Danio rerio similar to Rotavirus X associated
            non-structural protein (RoXaN) (LOC570979), mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  gaccaagagtgcatctctgg 440
            ||||||||||||||||||||
Sbjct: 1754 gaccaagagtgcatctctgg 1735
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>gb|AF319167.1|AF319167 Prunus persica unknown mRNA, partial cds
          Length = 550

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 287 aattcctcaacatccttaactgct 310
           |||||||| |||||||||||||||
Sbjct: 35  aattcctcgacatccttaactgct 12
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     atatgtaaaaaagtacaaaa 40
              ||||||||||||||||||||
Sbjct: 292397 atatgtaaaaaagtacaaaa 292378
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>gb|AC129887.3| Atelerix albiventris clone LB4-416G11, complete sequence
          Length = 169193

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    atatgtaaaaaagtacaaaa 40
             ||||||||||||||||||||
Sbjct: 88466 atatgtaaaaaagtacaaaa 88447
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>gb|AF332579.1|AF332579 Mus musculus small nuclear ribonucleoprotein N (Snrpn) gene, upstream
             reading frame exons U1, 1, 2, and 3
          Length = 80730

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaaagtttcctttctgatat 24
             ||||||||||||||||||||
Sbjct: 31603 aaaagtttcctttctgatat 31584
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>ref|NM_066360.2| Caenorhabditis elegans DiCer Related family member (dcr-1) (dcr-1)
            mRNA, complete cds
          Length = 5732

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  ctgtgcagagcttcttcttc 264
            ||||||||||||||||||||
Sbjct: 1626 ctgtgcagagcttcttcttc 1645
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 183     tcttgtgccctttggtttgagaaa 206
               ||||||||| ||||||||||||||
Sbjct: 7274463 tcttgtgccttttggtttgagaaa 7274440
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>gb|AC154574.2| Mus musculus BAC clone RP23-399K3 from chromosome 14, complete sequence
          Length = 180263

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    tattgctgagggacatcagg 363
              ||||||||||||||||||||
Sbjct: 103981 tattgctgagggacatcagg 103962
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>gb|L14331.1| Caenorhabditis elegans cosmid K12H4, complete sequence
          Length = 38582

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ctgtgcagagcttcttcttc 264
             ||||||||||||||||||||
Sbjct: 35531 ctgtgcagagcttcttcttc 35512
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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 183   tcttgtgccctttggtttgagaaa 206
             ||||||||| ||||||||||||||
Sbjct: 75893 tcttgtgccttttggtttgagaaa 75870
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>emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 in linkage group 18,
              complete sequence
          Length = 180248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 361    aggtgcggtagctctttcaggaac 384
              |||||| |||||||||||||||||
Sbjct: 133807 aggtgcagtagctctttcaggaac 133784
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>emb|BX469899.6| Zebrafish DNA sequence from clone CH211-155K24 in linkage group 4,
             complete sequence
          Length = 184184

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 448   atcaaaatactcaaaacagaaaag 471
             |||||| |||||||||||||||||
Sbjct: 86137 atcaaactactcaaaacagaaaag 86114
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>gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p21-p22, complete sequence
          Length = 109359

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttctgatatgtaaaaaagta 35
             ||||||||||||||||||||
Sbjct: 22344 ttctgatatgtaaaaaagta 22363
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>emb|BX005313.4| Zebrafish DNA sequence from clone CH211-119C24, complete sequence
          Length = 173719

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 361    aggtgcggtagctctttcaggaac 384
              |||||| |||||||||||||||||
Sbjct: 118314 aggtgcagtagctctttcaggaac 118291
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>emb|CR392338.16| Zebrafish DNA sequence from clone DKEY-262M9 in linkage group 3,
             complete sequence
          Length = 138425

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 361   aggtgcggtagctctttcaggaac 384
             |||||| |||||||||||||||||
Sbjct: 14118 aggtgcagtagctctttcaggaac 14095
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>gb|AC167813.4| Mus musculus BAC clone RP24-233L18 from chromosome 7, complete sequence
          Length = 172485

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aaaagtttcctttctgatat 24
              ||||||||||||||||||||
Sbjct: 123358 aaaagtttcctttctgatat 123377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,100,031
Number of Sequences: 3902068
Number of extensions: 6100031
Number of successful extensions: 113918
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113690
Number of HSP's gapped (non-prelim): 228
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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