ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27d06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 284 ttccagtcggcgaccacgttcctgaggtcgtgcatcttggtcccgagcctgaggcagcag 343 ||||||||||||| ||||||| |||||||| ||| |||| || | |||| || ||||||| Sbjct: 40199991 ttccagtcggcgagcacgttcttgaggtcgagcaccttgttctccagcccgacgcagcag 40199932 Query: 344 ttggcgtgcatcgtgcacaccctgtccatctcgccgtggtactcgcagaagccgtcgaag 403 |||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||||| Sbjct: 40199931 ttggcgtgcaccgtgcacaccctgccggcgtcggggcggtactcgcagaagccggcgaag 40199872 Query: 404 agcaccgtatcgaggaac 421 | | |||| || |||||| Sbjct: 40199871 accgccgtgtccaggaac 40199854 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 307 gaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 ||||||||||| ||||| ||||| | || |||||||||||||||||| Sbjct: 40187878 gaggtcgtgcagcttggcgccgaggccgacgcagcagttggcgtgcat 40187831 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 cgtggtactcgcagaagccgtcgaag 403 |||||||||||||||||||| ||||| Sbjct: 40206350 cgtggtactcgcagaagccgccgaag 40206325 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccct 366 |||||||||||||||||| |||||| |||| Sbjct: 40196776 gcagcagttggcgtgcatggtgcacgccct 40196747 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 306 tgaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 |||||||||||| |||||| |||| | || |||||||| ||||||||| Sbjct: 40206422 tgaggtcgtgcaccttggtgtcgaggccgacgcagcagtcggcgtgcat 40206374
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 284 ttccagtcggcgaccacgttcctgaggtcgtgcatcttggtcccgagcctgaggcagcag 343 ||||||||||||| ||||||| |||||||| ||| |||| || | |||| || ||||||| Sbjct: 143075 ttccagtcggcgagcacgttcttgaggtcgagcaccttgttctccagcccgacgcagcag 143016 Query: 344 ttggcgtgcatcgtgcacaccctgtccatctcgccgtggtactcgcagaagccgtcgaag 403 |||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||||| Sbjct: 143015 ttggcgtgcaccgtgcacaccctgccggcgtcggggcggtactcgcagaagccggcgaag 142956 Query: 404 agcaccgtatcgaggaac 421 | | |||| || |||||| Sbjct: 142955 accgccgtgtccaggaac 142938 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 307 gaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 ||||||||||| ||||| ||||| | || |||||||||||||||||| Sbjct: 130962 gaggtcgtgcagcttggcgccgaggccgacgcagcagttggcgtgcat 130915 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 cgtggtactcgcagaagccgtcgaag 403 |||||||||||||||||||| ||||| Sbjct: 149434 cgtggtactcgcagaagccgccgaag 149409 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccct 366 |||||||||||||||||| |||||| |||| Sbjct: 139860 gcagcagttggcgtgcatggtgcacgccct 139831 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 306 tgaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 |||||||||||| |||||| |||| | || |||||||| ||||||||| Sbjct: 149506 tgaggtcgtgcaccttggtgtcgaggccgacgcagcagtcggcgtgcat 149458
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 284 ttccagtcggcgaccacgttcctgaggtcgtgcatcttggtcccgagcctgaggcagcag 343 ||||||||||||| ||||||| |||||||| ||| |||| || | |||| || ||||||| Sbjct: 65769 ttccagtcggcgagcacgttcttgaggtcgagcaccttgttctccagcccgacgcagcag 65710 Query: 344 ttggcgtgcatcgtgcacaccctgtccatctcgccgtggtactcgcagaagccgtcgaag 403 |||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||||| Sbjct: 65709 ttggcgtgcaccgtgcacaccctgccggcgtcggggcggtactcgcagaagccggcgaag 65650 Query: 404 agcaccgtatcgaggaac 421 | | |||| || |||||| Sbjct: 65649 accgccgtgtccaggaac 65632 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 307 gaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 ||||||||||| ||||| ||||| | || |||||||||||||||||| Sbjct: 53656 gaggtcgtgcagcttggcgccgaggccgacgcagcagttggcgtgcat 53609 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 cgtggtactcgcagaagccgtcgaag 403 |||||||||||||||||||| ||||| Sbjct: 72128 cgtggtactcgcagaagccgccgaag 72103 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccct 366 |||||||||||||||||| |||||| |||| Sbjct: 62554 gcagcagttggcgtgcatggtgcacgccct 62525 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 306 tgaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 |||||||||||| |||||| |||| | || |||||||| ||||||||| Sbjct: 72200 tgaggtcgtgcaccttggtgtcgaggccgacgcagcagtcggcgtgcat 72152
>ref|XM_463633.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 696 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 284 ttccagtcggcgaccacgttcctgaggtcgtgcatcttggtcccgagcctgaggcagcag 343 ||||||||||||| ||||||| |||||||| ||| |||| || | |||| || ||||||| Sbjct: 596 ttccagtcggcgagcacgttcttgaggtcgagcaccttgttctccagcccgacgcagcag 537 Query: 344 ttggcgtgcatcgtgcacaccctg 367 |||||||||| ||||||||||||| Sbjct: 536 ttggcgtgcaccgtgcacaccctg 513
>ref|XM_493813.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 804 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacacc 364 |||||||||||||||||| ||||||||| Sbjct: 681 gcagcagttggcgtgcatggtgcacacc 654
>ref|XM_468593.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1554 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacacc 364 |||||||||||||||||| ||||||||| Sbjct: 1215 gcagcagttggcgtgcatggtgcacacc 1188
>ref|XM_463631.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 307 gaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 ||||||||||| ||||| ||||| | || |||||||||||||||||| Sbjct: 999 gaggtcgtgcagcttggcgccgaggccgacgcagcagttggcgtgcat 952
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 337 gcagcagttggcgtgcatcgtgcacacc 364 |||||||||||||||||| ||||||||| Sbjct: 1648007 gcagcagttggcgtgcatggtgcacacc 1648034 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 gtactcactccatctcaaaata 59 |||||||||||||||||||||| Sbjct: 35205381 gtactcactccatctcaaaata 35205360 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 32822293 tactcactccatctcaaaata 32822273 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 35464767 gcagcagttggcgtgcatggtgca 35464744 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atataatttatttagggatggagg 141 ||||||| |||||||||||||||| Sbjct: 30448112 atataatatatttagggatggagg 30448135 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 9589026 tagtactcactccatcccaaaata 9589049
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07, complete sequence Length = 87592 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 337 gcagcagttggcgtgcatcgtgcacacc 364 |||||||||||||||||| ||||||||| Sbjct: 55453 gcagcagttggcgtgcatggtgcacacc 55480
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 337 gcagcagttggcgtgcatcgtgcacacc 364 |||||||||||||||||| ||||||||| Sbjct: 1648005 gcagcagttggcgtgcatggtgcacacc 1648032 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 gtactcactccatctcaaaata 59 |||||||||||||||||||||| Sbjct: 35295453 gtactcactccatctcaaaata 35295432 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 32912803 tactcactccatctcaaaata 32912783 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 35554839 gcagcagttggcgtgcatggtgca 35554816 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atataatttatttagggatggagg 141 ||||||| |||||||||||||||| Sbjct: 30539534 atataatatatttagggatggagg 30539557 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 9587147 tagtactcactccatcccaaaata 9587170
>dbj|AK107508.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E08, full insert sequence Length = 729 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 307 gaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 ||||||||||| ||||| ||||| | || |||||||||||||||||| Sbjct: 407 gaggtcgtgcagcttggcgccgaggccgacgcagcagttggcgtgcat 360
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 337 gcagcagttggcgtgcatcgtgcacacc 364 |||||||||||||||||| ||||||||| Sbjct: 60470 gcagcagttggcgtgcatggtgcacacc 60497
>gb|AC107531.8| Rattus norvegicus 1 BAC CH230-158N3 (Children's Hospital Oakland Research Institute) complete sequence Length = 173190 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 133 ggatggaggcaatagtaaataaaaaat 159 |||||||| |||||||||||||||||| Sbjct: 59529 ggatggagtcaatagtaaataaaaaat 59503
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 cgtggtactcgcagaagccgtcgaag 403 |||||||||||||||||||| ||||| Sbjct: 916 cgtggtactcgcagaagccgccgaag 891 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 306 tgaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 |||||||||||| |||||| |||| | || |||||||| ||||||||| Sbjct: 988 tgaggtcgtgcaccttggtgtcgaggccgacgcagcagtcggcgtgcat 940
>ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccct 366 |||||||||||||||||| |||||| |||| Sbjct: 936 gcagcagttggcgtgcatggtgcacgccct 907
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 gtactcactccatctcaaaata 59 |||||||||||||||||||||| Sbjct: 84142 gtactcactccatctcaaaata 84121
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 cgtggtactcgcagaagccgtcgaag 403 |||||||||||||||||||| ||||| Sbjct: 5302 cgtggtactcgcagaagccgccgaag 5277 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 306 tgaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 |||||||||||| |||||| |||| | || |||||||| ||||||||| Sbjct: 5374 tgaggtcgtgcaccttggtgtcgaggccgacgcagcagtcggcgtgcat 5326
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 cgtggtactcgcagaagccgtcgaag 403 |||||||||||||||||||| ||||| Sbjct: 944 cgtggtactcgcagaagccgccgaag 919 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 306 tgaggtcgtgcatcttggtcccgagcctgaggcagcagttggcgtgcat 354 |||||||||||| |||||| |||| | || |||||||| ||||||||| Sbjct: 1016 tgaggtcgtgcaccttggtgtcgaggccgacgcagcagtcggcgtgcat 968
>ref|XM_483471.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccctgtccatctcgc 377 ||||||||||||||| | |||||| |||||| |||| |||| Sbjct: 876 gcagcagttggcgtggagcgtgcagaccctggccatgtcgc 836
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 57248 tactcactccatctcaaaata 57268
>ref|XM_386339.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06163.1) partial mRNA Length = 924 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tcatcttctccggcggcgtca 269 ||||||||||||||||||||| Sbjct: 50 tcatcttctccggcggcgtca 70
>emb|CR382377.10| Zebrafish DNA sequence from clone DKEY-238I13 in linkage group 17, complete sequence Length = 105441 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 catctcaaaatagatgtggca 68 ||||||||||||||||||||| Sbjct: 44983 catctcaaaatagatgtggca 44963
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence Length = 175163 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 76235 tactcactccatctcaaaata 76215
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 29795 tactcactccatctcaaaata 29815
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 19553 tactcactccatctcaaaata 19573
>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence Length = 150465 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 49823 tactcactccatctcaaaata 49803
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 28427560 tactcactccatctcaaaata 28427540
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 21314806 tactcactccatctcaaaata 21314786 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 17644836 tactcactccatctcaaaata 17644816 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 8794751 tactcactccatctcaaaata 8794731
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccctgtccatctcgc 377 ||||||||||||||| | |||||| |||||| |||| |||| Sbjct: 26393728 gcagcagttggcgtggagcgtgcagaccctggccatgtcgc 26393688
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 gtatattaagttacagagaaaatac 187 ||||||||||||||| ||||||||| Sbjct: 27432886 gtatattaagttacaaagaaaatac 27432910 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||| ||||||||||||||| Sbjct: 18935809 tagtactccctccatctcaaaata 18935832
>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003M19 Length = 171790 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 gtatattaagttacagagaaaatac 187 ||||||||||||||| ||||||||| Sbjct: 138547 gtatattaagttacaaagaaaatac 138571
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccctgtccatctcgc 377 ||||||||||||||| | |||||| |||||| |||| |||| Sbjct: 43280 gcagcagttggcgtggagcgtgcagaccctggccatgtcgc 43240
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccctgtccatctcgc 377 ||||||||||||||| | |||||| |||||| |||| |||| Sbjct: 123309 gcagcagttggcgtggagcgtgcagaccctggccatgtcgc 123269
>dbj|AK121908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105O06, full insert sequence Length = 1513 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 gtatattaagttacagagaaaatac 187 ||||||||||||||| ||||||||| Sbjct: 1457 gtatattaagttacaaagaaaatac 1433
>dbj|AK066822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077F20, full insert sequence Length = 762 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgcacaccctgtccatctcgc 377 ||||||||||||||| | |||||| |||||| |||| |||| Sbjct: 250 gcagcagttggcgtggagcgtgcagaccctggccatgtcgc 210
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 gaggcaatagtaaataaaaaa 158 ||||||||||||||||||||| Sbjct: 867065 gaggcaatagtaaataaaaaa 867085
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 21326070 tactcactccatctcaaaata 21326050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 17653876 tactcactccatctcaaaata 17653856 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tactcactccatctcaaaata 59 ||||||||||||||||||||| Sbjct: 8799890 tactcactccatctcaaaata 8799870
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gtactttttccagtcggcga 296 |||||||||||||||||||| Sbjct: 48354 gtactttttccagtcggcga 48373
>ref|NM_185177.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1447 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 1113 gcagcagttggcgtgcatggtgca 1090
>gb|AC068501.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-23C4, complete sequence Length = 196175 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcaatagtaaataaaaaatg 160 |||||||||||||||||||| Sbjct: 144820 gcaatagtaaataaaaaatg 144839
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ccggcggcgtcaggttcgag 277 |||||||||||||||||||| Sbjct: 5809779 ccggcggcgtcaggttcgag 5809760
>gb|AY318871.1| Canarypox virus strain ATCC VR-111, complete genome Length = 359853 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 ataaaaaatgtcgtatatta 170 |||||||||||||||||||| Sbjct: 286815 ataaaaaatgtcgtatatta 286834
>emb|Z83731.1|CEM04C9 Caenorhabditis elegans Cosmid M04C9, complete sequence Length = 31363 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 aatagtaaataaaaaatgtc 162 |||||||||||||||||||| Sbjct: 19940 aatagtaaataaaaaatgtc 19921
>gb|AC162031.12| Medicago truncatula clone mth2-194a22, complete sequence Length = 123712 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 37 agtactcactccatctcaaaatagatgt 64 ||||||| |||||||||||| ||||||| Sbjct: 36912 agtactctctccatctcaaattagatgt 36885
>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence Length = 97982 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 123 atttatttagggatggaggcaatagtaaataa 154 ||||||||||||||||||| | ||| |||||| Sbjct: 85194 atttatttagggatggagggagtagaaaataa 85225
>emb|BX293535.3| Human DNA sequence from clone RP4-752I6 on chromosome 1 Contains the 5' end of the WASF2 gene for WAS protein family, member 2 and a novel gene, complete sequence Length = 71971 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 gagcctgaggcagcagttgg 347 |||||||||||||||||||| Sbjct: 34843 gagcctgaggcagcagttgg 34862
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 aactcgcccttgattgcctc 471 |||||||||||||||||||| Sbjct: 560019 aactcgcccttgattgcctc 560000
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 9925 tagtactcactccatcccaaaata 9948
>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence Length = 149380 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 atataatttatttagggatggagg 141 ||||||| |||||||||||||||| Sbjct: 28903 atataatatatttagggatggagg 28880
>gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, complete sequence Length = 187914 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tggaggcaatagtaaataaa 155 |||||||||||||||||||| Sbjct: 8180 tggaggcaatagtaaataaa 8161
>gb|AC010261.5| Homo sapiens chromosome 5 clone CTC-459M5, complete sequence Length = 146017 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggaggcaatagtaaataaa 155 |||||||||||||||||||| Sbjct: 39203 tggaggcaatagtaaataaa 39222
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gaagagcaccgtatcgagga 419 |||||||||||||||||||| Sbjct: 2453978 gaagagcaccgtatcgagga 2453959 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cggcgacgaactcgcccttg 463 |||||||||||||||||||| Sbjct: 1248186 cggcgacgaactcgcccttg 1248205
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 3528477 tagtactcactccatcccaaaata 3528500
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||| ||||||||||| Sbjct: 7326386 tagtactcactctatctcaaaata 7326363
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gtactttttccagtcggcga 296 |||||||||||||||||||| Sbjct: 26534879 gtactttttccagtcggcga 26534898
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 actcactccatctcaaaata 59 |||||||||||||||||||| Sbjct: 33612012 actcactccatctcaaaata 33612031 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 125 ttatttagggatggaggcaatagtaaat 152 ||||||||||||||||| | |||||||| Sbjct: 10908372 ttatttagggatggaggtactagtaaat 10908399
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 22859 gcagcagttggcgtgcatggtgca 22882
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 tgcagctcgccggcgacgaactcg 457 ||||||||||||||||||| |||| Sbjct: 2013221 tgcagctcgccggcgacgatctcg 2013244
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 23660 tagtactcactccatcccaaaata 23637
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0062A09 Length = 173541 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||| ||||||||||| Sbjct: 60349 tagtactcactctatctcaaaata 60326
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||| ||||||||||||||| Sbjct: 37794 tagtactccctccatctcaaaata 37817
>dbj|BS000025.1| Pan troglodytes chromosome 22 clone:PTB-017K18, map 22, complete sequences Length = 144566 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tatattaagttacagagaaa 183 |||||||||||||||||||| Sbjct: 35207 tatattaagttacagagaaa 35188
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 125 ttatttagggatggaggcaatagtaaat 152 ||||||||||||||||| | |||||||| Sbjct: 114571 ttatttagggatggaggtactagtaaat 114598
>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1046_F07 Length = 114184 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 actcactccatctcaaaata 59 |||||||||||||||||||| Sbjct: 82683 actcactccatctcaaaata 82702
>dbj|AK105978.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F09, full insert sequence Length = 1474 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 1131 gcagcagttggcgtgcatggtgca 1108
>dbj|AK104518.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D02, full insert sequence Length = 1433 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 1101 gcagcagttggcgtgcatggtgca 1078
>dbj|AK071606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J20, full insert sequence Length = 1470 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 gcagcagttggcgtgcatcgtgca 360 |||||||||||||||||| ||||| Sbjct: 1127 gcagcagttggcgtgcatggtgca 1104
>dbj|AP001666.1| Homo sapiens genomic DNA, chromosome 21q, section 10/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tatattaagttacagagaaa 183 |||||||||||||||||||| Sbjct: 266872 tatattaagttacagagaaa 266853
>emb|AJ535078.1|OSA535078 Oryza sativa (japonica cultivar-group) mrp4 gene for MRP-like ABC transporter, exons 1-12 Length = 7960 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 ttatttagggatggaggcaatagtaaat 152 ||||||||||||||||| | |||||||| Sbjct: 7117 ttatttagggatggaggtactagtaaat 7090
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tctccggcggcgtcaggttc 274 |||||||||||||||||||| Sbjct: 1309807 tctccggcggcgtcaggttc 1309826
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 3528422 tagtactcactccatcccaaaata 3528445
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 43405 tagtactcactccatcccaaaata 43428
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 tagtactcactccatctcaaaata 59 |||||||||||||||| ||||||| Sbjct: 3439 tagtactcactccatcccaaaata 3416
>dbj|AP001172.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B812E1, LL56-APP region, complete sequence Length = 149114 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tatattaagttacagagaaa 183 |||||||||||||||||||| Sbjct: 7952 tatattaagttacagagaaa 7933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,113,638 Number of Sequences: 3902068 Number of extensions: 5113638 Number of successful extensions: 272671 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 271153 Number of HSP's gapped (non-prelim): 1518 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
