ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27d04 |
|---|---|
| Clone Library Name | barley_pub |
>PURB_BRARE (Q6PHK6) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) Length = 296 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/57 (42%), Positives = 34/57 (59%) Frame = -3 Query: 448 IRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKD 278 I D KRFFFD+GSN G +LR+SEV + R+SI +P +F + + MK+ Sbjct: 216 IMVDSKRFFFDVGSNKYGVFLRVSEVKPSYRNSITIPFKAWGKFGGAFSRYAEEMKE 272
>PURBA_XENLA (Q6PAC9) Transcriptional activator protein Pur-beta-A (Purine-rich| element-binding protein B-A) Length = 322 Score = 48.9 bits (115), Expect = 8e-06 Identities = 25/57 (43%), Positives = 35/57 (61%) Frame = -3 Query: 448 IRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKD 278 I D KRFFFD+GSN G +LR+SEV + R+SI +PL +F + + MK+ Sbjct: 227 ITVDSKRFFFDVGSNKYGVFLRVSEVKPSYRNSITVPLKAWGKFGGAFCRYSEEMKE 283
>PURBB_XENLA (Q8AVS4) Transcriptional activator protein Pur-beta-B (Purine-rich| element binding protein B-B) Length = 327 Score = 48.9 bits (115), Expect = 8e-06 Identities = 25/57 (43%), Positives = 35/57 (61%) Frame = -3 Query: 448 IRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKD 278 I D KRFFFD+GSN G +LR+SEV + R+SI +PL +F + + MK+ Sbjct: 230 ITVDSKRFFFDVGSNKYGVFLRVSEVKPSYRNSITVPLKAWGKFGGAFCRYSEEMKE 286
>PURB_MOUSE (O35295) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) (Vascular actin single-stranded DNA-binding factor 2 p44 component) Length = 323 Score = 46.6 bits (109), Expect = 4e-05 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = -3 Query: 448 IRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKD 278 I D KRFFFD+G N G +LR+SEV + R++I +P +F + D MK+ Sbjct: 236 ITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKE 292 Score = 42.4 bits (98), Expect = 7e-04 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = -3 Query: 493 GPPIEEFSGMGLSKVIRADQKRFFFDLGSNNRGHYLRISEV-AGADRSSIILPLSGLKQF 317 GP E+ + SK + KRF+ D+ N +G +L+I+EV AG +S + L ++ +F Sbjct: 35 GPGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEF 94 Query: 316 HEMVGHFVD 290 + +G F++ Sbjct: 95 RDSLGDFIE 103
>PURB_RAT (Q68A21) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) Length = 314 Score = 46.6 bits (109), Expect = 4e-05 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = -3 Query: 448 IRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKD 278 I D KRFFFD+G N G +LR+SEV + R++I +P +F + D MK+ Sbjct: 227 ITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKE 283 Score = 42.4 bits (98), Expect = 7e-04 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = -3 Query: 493 GPPIEEFSGMGLSKVIRADQKRFFFDLGSNNRGHYLRISEV-AGADRSSIILPLSGLKQF 317 GP E+ + SK + KRF+ D+ N +G +L+I+EV AG +S + L ++ +F Sbjct: 26 GPGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEF 85 Query: 316 HEMVGHFVD 290 + +G F++ Sbjct: 86 RDSLGDFIE 94
>PURB_HUMAN (Q96QR8) Transcriptional activator protein Pur-beta (Purine-rich| element-binding protein B) Length = 311 Score = 46.6 bits (109), Expect = 4e-05 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = -3 Query: 448 IRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVDIMKD 278 I D KRFFFD+G N G +LR+SEV + R++I +P +F + D MK+ Sbjct: 224 ITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKE 280
>PURA_HUMAN (Q00577) Transcriptional activator protein Pur-alpha (Purine-rich| single-stranded DNA-binding protein alpha) Length = 322 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/73 (36%), Positives = 38/73 (52%) Frame = -3 Query: 499 VDGPPIEEFSGMGLSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQ 320 V+ P E G L+ D KRFFFD+GSN G ++R+SEV R+SI +P + Sbjct: 211 VEEEPAELPEGTSLT----VDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAK 266 Query: 319 FHEMVGHFVDIMK 281 F + + MK Sbjct: 267 FGHTFCKYSEEMK 279
>PURA_MOUSE (P42669) Transcriptional activator protein Pur-alpha (Purine-rich| single-stranded DNA-binding protein alpha) Length = 321 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/73 (36%), Positives = 38/73 (52%) Frame = -3 Query: 499 VDGPPIEEFSGMGLSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQ 320 V+ P E G L+ D KRFFFD+GSN G ++R+SEV R+SI +P + Sbjct: 210 VEEEPAELPEGTSLT----VDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAK 265 Query: 319 FHEMVGHFVDIMK 281 F + + MK Sbjct: 266 FGHTFCKYSEEMK 278
>LY6D_MOUSE (P35459) Lymphocyte antigen Ly-6D precursor (Thymocyte B-cell| antigen) (ThB) Length = 127 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +1 Query: 271 QVCPSLY-----LQSVPPSHGTASNQKAARLSTNDQLQQPRKSSNNDPCCCC 411 QVCPS + + SV P +G ++ A T+D QQ SS ++ CC Sbjct: 36 QVCPSNFYFCKTVTSVEPLNGNLVRKECANSCTSDYSQQGHVSSGSEVTQCC 87
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 30.4 bits (67), Expect = 2.9 Identities = 21/60 (35%), Positives = 30/60 (50%) Frame = +1 Query: 40 EKVPSKSILATEFKKKKTKHQTLLSPSDELILHDLRNHTPHHLHKS*RRHNSSKGHKVEL 219 +K+ KS+L T+ KKK L+ DE ++H T H NSS+GH VE+ Sbjct: 238 KKLIPKSVLNTQKKKK------LVIDLDETLIHSASRSTTHS--------NSSQGHLVEV 283
>MURD_CHLPN (Q9Z705) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 417 Score = 29.3 bits (64), Expect = 6.5 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +2 Query: 98 IKHYYPHQMN*YCMIYATTHHITYTNPRGDITAVR 202 +K Y H + YC YA + + + +P G + A+R Sbjct: 237 LKPIYLHDRDNYCAAYALANEVGWVSPEGFLKAIR 271
>YDHF_SCHPO (Q92360) Hypothetical protein C6G9.15c in chromosome I| Length = 498 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 265 FLQVCPSLYLQSVPPSHGTASNQKAARLSTND 360 F V PSL ++PP G AS+ A L+ ND Sbjct: 69 FQAVLPSLISPTLPPGFGMASDDSEASLAEND 100
>MSL1_DROME (P50535) Protein male-specific lethal-1| Length = 1039 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +1 Query: 37 TEKVPSKSILATEFKKKKTKHQTLLSPSDELILHDLRNHTPHHLHK 174 T+ + SKS+L + KKT +T SP E+ + +R HL K Sbjct: 662 TKTIKSKSMLVND---KKTTSETSQSPDQEIDVETVRRKLAEHLKK 704
>HMDH_SCHMA (P16237) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 948 Score = 28.9 bits (63), Expect = 8.5 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Frame = +2 Query: 248 HVRARHSFKSVLHYIYKVSH--------HLMELLQTRKRQDYRRTISSS--NLGNPQIMT 397 H+ A + S+ H+IY + H +L L KR + I+S NL P+I Sbjct: 328 HITA-YEVTSIFHFIYNIFHVINANLVVYLFLGLFLFKRIRLNKPINSQLRNLNIPKIKE 386 Query: 398 PVVAAQVKEKPFL 436 +++ QVK+ P L Sbjct: 387 TLISDQVKQSPVL 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,850,942 Number of Sequences: 219361 Number of extensions: 1382334 Number of successful extensions: 4037 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3909 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4035 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
