ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106329.1| Zea mays PCO108877 mRNA sequence 333 3e-88
2ref|NM_187950.1| Oryza sativa (japonica cultivar-group), Ozsa837... 311 1e-81
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
4dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
5gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, com... 44 0.44
6gb|AC122801.3| Mus musculus BAC clone RP23-471L3 from chromosome... 42 1.7
7gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete s... 42 1.7
8emb|AL929601.4|CNS08CCG Human chromosome 14 DNA sequence Partial... 42 1.7
9emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chrom... 42 1.7
10gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, com... 40 6.9
11gb|AC146000.4| Pan troglodytes BAC clone RP43-147L18 from 7, com... 40 6.9
12gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosom... 40 6.9
13gb|AC135604.29| Medicago truncatula clone mth2-32p10, complete s... 40 6.9
14gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G... 40 6.9
15emb|CR812469.6| Zebrafish DNA sequence from clone DKEY-286F3 in ... 40 6.9
16gb|AC105057.7| Homo sapiens 3 BAC RP11-543P4 (Roswell Park Cance... 40 6.9
17gb|AC092314.2| Homo sapiens chromosome 19 clone LLNLR-305H12, co... 40 6.9
18gb|AF165693.1|AF165693 Rangifer tarandus protein kinase C iota g... 40 6.9
19gb|AC012616.7| Homo sapiens chromosome 19 clone CTD-2557P19, com... 40 6.9
20gb|AC024084.4|AC024084 Human Chromosome 7 clone RP11-212C18, com... 40 6.9
21gb|AC009784.2|AC009784 Homo sapiens clone RP11-277F10 from 7q31,... 40 6.9
22emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 i... 40 6.9
23emb|AL162551.4|CNS01RHW Human chromosome 14 DNA sequence BAC R-4... 40 6.9
24emb|AL121576.5|CNS01DRW Human chromosome 14 DNA sequence BAC R-4... 40 6.9
25gb|AC008734.7| Homo sapiens chromosome 19 clone CTD-2529P6, comp... 40 6.9
26gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 40 6.9
27emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chr... 40 6.9
28emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chr... 40 6.9
29emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chr... 40 6.9
30emb|AL672200.10| Mouse DNA sequence from clone RP23-37G19 on chr... 40 6.9 
>gb|AY106329.1| Zea mays PCO108877 mRNA sequence
          Length = 842

 Score =  333 bits (168), Expect = 3e-88
 Identities = 240/264 (90%)
 Strand = Plus / Minus

                                                                       
Query: 218 taatcatctctggctgggctcgactgtgcgcacgttcgcgcccgtcattccttcaagtct 277
           |||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||
Sbjct: 596 taatcatctctggctgggctcgacagtgcgcacgttagctcctgtcattccttcaagcct 537

                                                                       
Query: 278 gtccttcattatatctacaaagtgtcccaccatctcatggaactgcttcaaaccagaaag 337
           |||||||||||||||||||||||| || ||||| |||||||| ||||||||||| || ||
Sbjct: 536 gtccttcattatatctacaaagtgaccaaccatttcatggaattgcttcaaacccgagag 477

                                                                       
Query: 338 cggcaagattatcgacgaacgatcagctccagcaacctcggaaatcctcaaataatgacc 397
           ||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 476 cggcaagataatagacgaacgatcagctccagccacctcagaaatcctcaaataatggcc 417

                                                                       
Query: 398 cctgttgttgctgcccaggtcaaagaaaaaccttttttgatctgccctaatcaccttaga 457
           ||||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 416 cctgttgttgctgcccaggtcgaagaagaaccttttctgatctgccctgataaccttaga 357

                                   
Query: 458 cagccccatgccactaaattcttc 481
           ||  ||||||||||||| ||||||
Sbjct: 356 catacccatgccactaatttcttc 333



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 103 acattattatccccatcagatgaattaatactgcatgatctacgcaaccacacaccacat 162
           ||||||||||||||| ||||||||||||||| || ||||||||   ||||||||||||||
Sbjct: 709 acattattatccccaccagatgaattaatacggcgtgatctacattaccacacaccacat 650



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 41  aaaaggtcccaagcaaatcaatcctcgccacagaattc 78
           |||| ||||||| |||||||||||||||||| ||||||
Sbjct: 768 aaaaagtcccaaacaaatcaatcctcgccactgaattc 731
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>ref|NM_187950.1| Oryza sativa (japonica cultivar-group), Ozsa8370 predicted mRNA
          Length = 927

 Score =  311 bits (157), Expect = 1e-81
 Identities = 235/261 (90%)
 Strand = Plus / Minus

                                                                       
Query: 221 tcatctctggctgggctcgactgtgcgcacgttcgcgcccgtcattccttcaagtctgtc 280
           ||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct: 927 tcatctctgactggactccactgtgcgcacgttcgcgcccgtcatcccttccagcctgtc 868

                                                                       
Query: 281 cttcattatatctacaaagtgtcccaccatctcatggaactgcttcaaaccagaaagcgg 340
           ||||||||||||||||||||| || ||||| |||||||| |||||||| || || || ||
Sbjct: 867 cttcattatatctacaaagtggccaaccatttcatggaattgcttcaacccggagagtgg 808

                                                                       
Query: 341 caagattatcgacgaacgatcagctccagcaacctcggaaatcctcaaataatgacccct 400
           |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||
Sbjct: 807 caagattatcgacgaacgatcagctccagcaacctcagaaatcctcaggtaatgacccct 748

                                                                       
Query: 401 gttgttgctgcccaggtcaaagaaaaaccttttttgatctgccctaatcaccttagacag 460
           ||||||||| || ||||||||||| ||||| |||||||||||||| || |||||||||| 
Sbjct: 747 gttgttgcttccaaggtcaaagaagaacctcttttgatctgcccttatgaccttagacat 688

                                
Query: 461 ccccatgccactaaattcttc 481
            ||||||||||||| ||||||
Sbjct: 687 gcccatgccactaatttcttc 667
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  200 bits (101), Expect = 3e-48
 Identities = 143/157 (91%)
 Strand = Plus / Minus

                                                                           
Query: 219     aatcatctctggctgggctcgactgtgcgcacgttcgcgcccgtcattccttcaagtctg 278
               ||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || |||
Sbjct: 8762232 aatcatctctgactggactccactgtgcgcacgttcgcgcccgtcatcccttccagcctg 8762173

                                                                           
Query: 279     tccttcattatatctacaaagtgtcccaccatctcatggaactgcttcaaaccagaaagc 338
               ||||||||||||||||||||||| || ||||| |||||||| |||||||| || || || 
Sbjct: 8762172 tccttcattatatctacaaagtggccaaccatttcatggaattgcttcaacccggagagt 8762113

                                                    
Query: 339     ggcaagattatcgacgaacgatcagctccagcaacct 375
               |||||||||||||||||||||||||||||||||||||
Sbjct: 8762112 ggcaagattatcgacgaacgatcagctccagcaacct 8762076



 Score =  123 bits (62), Expect = 6e-25
 Identities = 98/110 (89%)
 Strand = Plus / Minus

                                                                           
Query: 372     acctcggaaatcctcaaataatgacccctgttgttgctgcccaggtcaaagaaaaacctt 431
               ||||| ||||||||||  |||||||||||||||||||| || ||||||||||| ||||| 
Sbjct: 8761993 acctcagaaatcctcaggtaatgacccctgttgttgcttccaaggtcaaagaagaacctc 8761934

                                                                 
Query: 432     ttttgatctgccctaatcaccttagacagccccatgccactaaattcttc 481
               |||||||||||||| || ||||||||||  ||||||||||||| ||||||
Sbjct: 8761933 ttttgatctgcccttatgaccttagacatgcccatgccactaatttcttc 8761884



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 17      atactgcttattattcctcaacagaaaaggtcccaagcaaatcaatcctcgccacagaat 76
               ||||||||||||||||||| |||  ||| ||||||| ||||||||||||| |||| ||||
Sbjct: 8762436 atactgcttattattcctcgacaagaaaagtcccaaacaaatcaatcctcaccactgaat 8762377

                 
Query: 77      tc 78
               ||
Sbjct: 8762376 tc 8762375



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 176     cctagaggagacataacagcagtaagggcca 206
               |||||||||| |||||||||||||| |||||
Sbjct: 8762284 cctagaggaggcataacagcagtaacggcca 8762254
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>dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0699D11
          Length = 140825

 Score =  200 bits (101), Expect = 3e-48
 Identities = 143/157 (91%)
 Strand = Plus / Minus

                                                                         
Query: 219   aatcatctctggctgggctcgactgtgcgcacgttcgcgcccgtcattccttcaagtctg 278
             ||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || |||
Sbjct: 79689 aatcatctctgactggactccactgtgcgcacgttcgcgcccgtcatcccttccagcctg 79630

                                                                         
Query: 279   tccttcattatatctacaaagtgtcccaccatctcatggaactgcttcaaaccagaaagc 338
             ||||||||||||||||||||||| || ||||| |||||||| |||||||| || || || 
Sbjct: 79629 tccttcattatatctacaaagtggccaaccatttcatggaattgcttcaacccggagagt 79570

                                                  
Query: 339   ggcaagattatcgacgaacgatcagctccagcaacct 375
             |||||||||||||||||||||||||||||||||||||
Sbjct: 79569 ggcaagattatcgacgaacgatcagctccagcaacct 79533



 Score =  123 bits (62), Expect = 6e-25
 Identities = 98/110 (89%)
 Strand = Plus / Minus

                                                                         
Query: 372   acctcggaaatcctcaaataatgacccctgttgttgctgcccaggtcaaagaaaaacctt 431
             ||||| ||||||||||  |||||||||||||||||||| || ||||||||||| ||||| 
Sbjct: 79450 acctcagaaatcctcaggtaatgacccctgttgttgcttccaaggtcaaagaagaacctc 79391

                                                               
Query: 432   ttttgatctgccctaatcaccttagacagccccatgccactaaattcttc 481
             |||||||||||||| || ||||||||||  ||||||||||||| ||||||
Sbjct: 79390 ttttgatctgcccttatgaccttagacatgcccatgccactaatttcttc 79341



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 17    atactgcttattattcctcaacagaaaaggtcccaagcaaatcaatcctcgccacagaat 76
             ||||||||||||||||||| |||  ||| ||||||| ||||||||||||| |||| ||||
Sbjct: 79893 atactgcttattattcctcgacaagaaaagtcccaaacaaatcaatcctcaccactgaat 79834

               
Query: 77    tc 78
             ||
Sbjct: 79833 tc 79832



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 176   cctagaggagacataacagcagtaagggcca 206
             |||||||||| |||||||||||||| |||||
Sbjct: 79741 cctagaggaggcataacagcagtaacggcca 79711
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>gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, complete sequence
          Length = 201126

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 190   aacagcagtaagggccacaaag 211
             ||||||||||||||||||||||
Sbjct: 17015 aacagcagtaagggccacaaag 17036
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>gb|AC122801.3| Mus musculus BAC clone RP23-471L3 from chromosome 18, complete sequence
          Length = 187926

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    agcagtaagggccacaaagtc 213
              |||||||||||||||||||||
Sbjct: 116946 agcagtaagggccacaaagtc 116966
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>gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete sequence
          Length = 141672

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 391   aatgacccctgttgttgctgcccaggtcaaagaaaaaccttttttgatc 439
             |||| ||||| |||||| | || || ||||||||||| |||||||||||
Sbjct: 19800 aatggcccctattgttgttcccaagatcaaagaaaaatcttttttgatc 19752
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>emb|AL929601.4|CNS08CCG Human chromosome 14 DNA sequence Partial sequence from BAC R-244H18 of
             library RPCI-11 from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 176156

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   cttcattatatctacaaagtg 301
             |||||||||||||||||||||
Sbjct: 40021 cttcattatatctacaaagtg 40041
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>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete sequence
          Length = 220201

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    tattatccccatcagatgaat 127
              |||||||||||||||||||||
Sbjct: 173040 tattatccccatcagatgaat 173020
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>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence
          Length = 236143

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    taacagcagtaagggccacaaagt 212
              ||||||||||||||| ||||||||
Sbjct: 160568 taacagcagtaagggacacaaagt 160545
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>gb|AC146000.4| Pan troglodytes BAC clone RP43-147L18 from 7, complete sequence
          Length = 176192

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   catgccactaaattcttcaa 483
             ||||||||||||||||||||
Sbjct: 91418 catgccactaaattcttcaa 91399
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>gb|AC161246.2| Mus musculus BAC clone RP24-421E18 from chromosome 9, complete sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   caaacattattatccccatc 119
             ||||||||||||||||||||
Sbjct: 96575 caaacattattatccccatc 96594
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>gb|AC135604.29| Medicago truncatula clone mth2-32p10, complete sequence
          Length = 136735

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   tcaaagaaaaaccttttttg 436
             ||||||||||||||||||||
Sbjct: 59327 tcaaagaaaaaccttttttg 59346
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>gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G10, complete sequence
          Length = 228160

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    ttcattatatctacaaagtg 301
              ||||||||||||||||||||
Sbjct: 218980 ttcattatatctacaaagtg 218999
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>emb|CR812469.6| Zebrafish DNA sequence from clone DKEY-286F3 in linkage group 5,
             complete sequence
          Length = 162086

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   aagaaaaaccttttttgatc 439
             ||||||||||||||||||||
Sbjct: 33716 aagaaaaaccttttttgatc 33735
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>gb|AC105057.7| Homo sapiens 3 BAC RP11-543P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165602

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tattcctcaacagaaaaggt 47
             ||||||||||||||||||||
Sbjct: 66089 tattcctcaacagaaaaggt 66108
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>gb|AC092314.2| Homo sapiens chromosome 19 clone LLNLR-305H12, complete sequence
          Length = 44426

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   agcagtaagggccacaaagt 212
             ||||||||||||||||||||
Sbjct: 10869 agcagtaagggccacaaagt 10850
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>gb|AF165693.1|AF165693 Rangifer tarandus protein kinase C iota gene, partial sequence
          Length = 538

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  taaacatcaaacattattat 112
           ||||||||||||||||||||
Sbjct: 277 taaacatcaaacattattat 296
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>gb|AC012616.7| Homo sapiens chromosome 19 clone CTD-2557P19, complete sequence
          Length = 95328

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   agcagtaagggccacaaagt 212
             ||||||||||||||||||||
Sbjct: 22590 agcagtaagggccacaaagt 22609
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>gb|AC024084.4|AC024084 Human Chromosome 7 clone RP11-212C18, complete sequence
          Length = 183709

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    catgccactaaattcttcaa 483
              ||||||||||||||||||||
Sbjct: 177953 catgccactaaattcttcaa 177972
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>gb|AC009784.2|AC009784 Homo sapiens clone RP11-277F10 from 7q31, complete sequence
          Length = 165822

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   catgccactaaattcttcaa 483
             ||||||||||||||||||||
Sbjct: 53998 catgccactaaattcttcaa 54017
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>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18,
             complete sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   agaaaaaccttttttgatct 440
             ||||||||||||||||||||
Sbjct: 13389 agaaaaaccttttttgatct 13408
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>emb|AL162551.4|CNS01RHW Human chromosome 14 DNA sequence BAC R-479H16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 182960

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    aaagaaaaaccttttttgat 438
              ||||||||||||||||||||
Sbjct: 100275 aaagaaaaaccttttttgat 100294
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>emb|AL121576.5|CNS01DRW Human chromosome 14 DNA sequence BAC R-476J6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 221004

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   aaagaaaaaccttttttgat 438
             ||||||||||||||||||||
Sbjct: 59751 aaagaaaaaccttttttgat 59770
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>gb|AC008734.7| Homo sapiens chromosome 19 clone CTD-2529P6, complete sequence
          Length = 183137

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  agcagtaagggccacaaagt 212
            ||||||||||||||||||||
Sbjct: 5514 agcagtaagggccacaaagt 5495
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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    ataatgacccctgttgttgc 408
              ||||||||||||||||||||
Sbjct: 962498 ataatgacccctgttgttgc 962479
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>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete
             sequence
          Length = 164883

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   caaagaaaaaccttttttga 437
             ||||||||||||||||||||
Sbjct: 85112 caaagaaaaaccttttttga 85131
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>emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete
              sequence
          Length = 132775

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    taacagcagtaagggccacaaagt 212
              ||||||||||||||| ||||||||
Sbjct: 132201 taacagcagtaagggacacaaagt 132178
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>emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chromosome 2, complete
              sequence
          Length = 200141

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     tcaacagaaaaggtcccaag 53
              ||||||||||||||||||||
Sbjct: 166508 tcaacagaaaaggtcccaag 166527
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>emb|AL672200.10| Mouse DNA sequence from clone RP23-37G19 on chromosome 3, complete
            sequence
          Length = 89129

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  taacagcagtaagggccacaaagt 212
            ||||||||||||||| ||||||||
Sbjct: 1426 taacagcagtaagggacacaaagt 1403


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,617,318
Number of Sequences: 3902068
Number of extensions: 4617318
Number of successful extensions: 84202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84115
Number of HSP's gapped (non-prelim): 87
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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