ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart27d01 |
|---|---|
| Clone Library Name | barley_pub |
>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor| Length = 250 Score = 77.8 bits (190), Expect = 2e-14 Identities = 36/79 (45%), Positives = 58/79 (73%), Gaps = 1/79 (1%) Frame = -3 Query: 539 DELAIETMRLLNRDANLTDN-AYEGPQFSDLDESLQKSFHRYLEVRGIKHSLHDWLLEYM 363 DE+AI+ + + + +L D A EGP F DLDE+L+K+F+++LE+RG+K S ++L EYM Sbjct: 170 DEIAIDALSVKHPGDSLEDQLANEGPDFEDLDENLKKTFYKFLEIRGVKASTTNFLHEYM 229 Query: 362 MGKDEKEYVVWLKNMRDFI 306 K +EY +WLKN+++F+ Sbjct: 230 TRKVNREYFLWLKNVKEFM 248
>MAM33_YEAST (P40513) Mitochondrial acidic protein MAM33, mitochondrial| precursor Length = 266 Score = 57.4 bits (137), Expect = 3e-08 Identities = 25/56 (44%), Positives = 34/56 (60%) Frame = -3 Query: 476 YEGPQFSDLDESLQKSFHRYLEVRGIKHSLHDWLLEYMMGKDEKEYVVWLKNMRDF 309 Y GP FS+LDE LQ+S YLE RG+ L ++ Y K+ EY+ WL+ M+ F Sbjct: 209 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKF 264
>Y2979_ARATH (O22288) Hypothetical protein At2g39790, mitochondrial precursor| Length = 240 Score = 53.5 bits (127), Expect = 4e-07 Identities = 23/54 (42%), Positives = 40/54 (74%) Frame = -3 Query: 467 PQFSDLDESLQKSFHRYLEVRGIKHSLHDWLLEYMMGKDEKEYVVWLKNMRDFI 306 P+F +LD++L+K+FHRYL R + ++ L +YM+ K ++EY++WLKN+ F+ Sbjct: 186 PRFKNLDDNLKKAFHRYLATR-LDANITKLLHKYMVSKIKREYLLWLKNVNKFV 238
>C1QBP_MOUSE (O35658) Complement component 1, Q subcomponent-binding protein,| mitochondrial precursor (Glycoprotein gC1qBP) (C1qBP) (GC1q-R protein) Length = 278 Score = 34.3 bits (77), Expect = 0.24 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = -3 Query: 503 RDANLTDNAYEGPQFSDLDESLQKSFHRYLEVRGIKHSLHDWLLEYMMGKDEKEYVVWLK 324 RD N T N LD +L +L RG+ ++ D L+E + +EY+ +L+ Sbjct: 216 RDTNYTLNT------DSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLE 269 Query: 323 NMRDFIGN 300 +++ F+ N Sbjct: 270 DLKSFVKN 277
>C1QBP_RAT (O35796) Complement component 1, Q subcomponent-binding protein,| mitochondrial precursor (Glycoprotein gC1qBP) (C1qBP) (GC1q-R protein) Length = 278 Score = 32.7 bits (73), Expect = 0.69 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -3 Query: 503 RDANLTDNAYEGPQFSDLDESLQKSFHRYLEVRGIKHSLHDWLLEYMMGKDEKEYVVWLK 324 RD N T N LD +L +L RG+ ++ D L+E + +EY+ +L+ Sbjct: 216 RDTNYTLNT------DSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLE 269 Query: 323 NMRDFI 306 +++ F+ Sbjct: 270 DLKSFV 275
>PKSL_BACSU (Q05470) Putative polyketide synthase pksL (PKS)| Length = 4538 Score = 32.7 bits (73), Expect = 0.69 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -1 Query: 250 PGAPCQT-CLIIIVHCFLARQVLVNAEVDLCFAGPVSCRNVSASYL 116 P P T C +V LARQ L+N E+D+ G VS SY+ Sbjct: 3032 PAIPIDTACSSSLVGTHLARQALINKEIDMALVGGVSLYLTPESYM 3077
>TKT_RAT (P50137) Transketolase (EC 2.2.1.1) (TK)| Length = 623 Score = 32.3 bits (72), Expect = 0.90 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 129 ETFLQLTGPAKHKSTSAFTKTWRARKQCTIMIRQVWHGAP 248 E + G AKH+ T+ KT++ R I ++ WHG P Sbjct: 222 EELCKAFGQAKHQPTAIIAKTFKGRGITGIEDKEAWHGKP 261
>TKT_MOUSE (P40142) Transketolase (EC 2.2.1.1) (TK) (P68)| Length = 623 Score = 32.3 bits (72), Expect = 0.90 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 129 ETFLQLTGPAKHKSTSAFTKTWRARKQCTIMIRQVWHGAP 248 E + G AKH+ T+ KT++ R I ++ WHG P Sbjct: 222 EELCKAFGQAKHQPTAIIAKTFKGRGITGIEDKEAWHGKP 261
>C1QBP_HUMAN (Q07021) Complement component 1, Q subcomponent-binding protein,| mitochondrial precursor (Glycoprotein gC1qBP) (C1qBP) (GC1q-R protein) (Hyaluronan-binding protein 1) (p32) (p33) Length = 282 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = -3 Query: 503 RDANLTDNAYEGPQFSDLDESLQKSFHRYLEVRGIKHSLHDWLLEYMMGKDEKEYVVWLK 324 +D N T N LD +L +L RG+ ++ D L+E + +EY+ +L+ Sbjct: 220 KDTNYTLNT------DSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLE 273 Query: 323 NMRDFI 306 +++ F+ Sbjct: 274 DLKSFV 279
>TKT_MACFA (Q60HC7) Transketolase (EC 2.2.1.1) (TK)| Length = 623 Score = 31.2 bits (69), Expect = 2.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 129 ETFLQLTGPAKHKSTSAFTKTWRARKQCTIMIRQVWHGAP 248 E + G AKH+ T+ KT++ R + ++ WHG P Sbjct: 222 EELCKAFGQAKHQPTAIIAKTFKGRGITGVEDKESWHGKP 261
>TKT_HUMAN (P29401) Transketolase (EC 2.2.1.1) (TK)| Length = 623 Score = 31.2 bits (69), Expect = 2.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 129 ETFLQLTGPAKHKSTSAFTKTWRARKQCTIMIRQVWHGAP 248 E + G AKH+ T+ KT++ R + ++ WHG P Sbjct: 222 EELCKAFGQAKHQPTAIIAKTFKGRGITGVEDKESWHGKP 261
>TKT_PANTR (Q5R1W6) Transketolase (EC 2.2.1.1) (TK)| Length = 623 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 129 ETFLQLTGPAKHKSTSAFTKTWRARKQCTIMIRQVWHGAP 248 E + G AKH+ T+ KT++ R + ++ WHG P Sbjct: 222 EELCKAFGQAKHQPTAIIAKTFKGRGITGVEGKESWHGKP 261
>CI068_RAT (Q6AYJ3) Protein C9orf68 homolog| Length = 398 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +1 Query: 367 YSSSQSWSECLIPLTSRYLWNDFCKL-SSRSENCGPS 474 +S+ + EC+ P +R+LW + CKL S S+ GP+ Sbjct: 139 FSTRTAILECVFPCKNRFLWEERCKLQQSFSKLNGPA 175
>BGAL_STAXY (O33815) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 994 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 325 FNQTTYSFSSLPIMYSSSQSWSECLIPLTSRYLWNDFCKLSSRSENCGPSYALSVRLASR 504 FN T YS L + + + L P YL+ D+ + S +CGP + RL +R Sbjct: 929 FNTTHYSLKQL-----TETTHKDALEPEDQTYLYIDYAQSGIGSNSCGPELNEAYRLNNR 983 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,896,105 Number of Sequences: 219361 Number of extensions: 1706676 Number of successful extensions: 4119 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4115 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
