ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 398 bits (201), Expect = e-108 Identities = 342/389 (87%) Strand = Plus / Minus Query: 138 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 197 ||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 4287941 ttgacacgaatgacttggccgttgatccacccggcggcgtcggtgcagaggaagcccacc 4287882 Query: 198 accggcgccacgtccgccggctcgccgatgcgcttcatggggcacccgctggcgacggcc 257 ||||||||||||||| |||||||||||| ||| ||| |||||| ||| ||||||||| Sbjct: 4287881 accggcgccacgtccatcggctcgccgatccgccccatcgggcactcgccggcgacggca 4287822 Query: 258 ctcacgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgcc 317 |||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 4287821 gcgacgcgctcctcgctcttgccggcgtagaacatcggcgtcgcgaccggccccggcgcc 4287762 Query: 318 acgctgttggccgtgatgcccgtcccggcgagctccttggccagcaccttggtcatcgcc 377 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4287761 acgctgttcgccgtgatccccgtcccggcgagctccttggccagcaccttcgtcatcgcc 4287702 Query: 378 tccacggccgccttcgtcgccacgtacgcgccatagcctggccggagcgaccccacgttc 437 ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| Sbjct: 4287701 tccaccgccgccttcgtcgccacgtacgcgccgtacccgggccggagggaccccacgttg 4287642 Query: 438 gacgacgagaaggtgactatccgcccgccgccgcctctgacgagccgccgggccgcctgc 497 ||||||||||||||||| | |||||||||||||| | | |||||||| ||||||| Sbjct: 4287641 gacgacgagaaggtgacgacgcgcccgccgccgccgcgcgccagccgccgcgccgcctcg 4287582 Query: 498 cggcagcacaggaacgtgccgcgcgcgtt 526 ||||||||||||||||||||||||||||| Sbjct: 4287581 cggcagcacaggaacgtgccgcgcgcgtt 4287553
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 398 bits (201), Expect = e-108 Identities = 342/389 (87%) Strand = Plus / Minus Query: 138 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 197 ||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 133162 ttgacacgaatgacttggccgttgatccacccggcggcgtcggtgcagaggaagcccacc 133103 Query: 198 accggcgccacgtccgccggctcgccgatgcgcttcatggggcacccgctggcgacggcc 257 ||||||||||||||| |||||||||||| ||| ||| |||||| ||| ||||||||| Sbjct: 133102 accggcgccacgtccatcggctcgccgatccgccccatcgggcactcgccggcgacggca 133043 Query: 258 ctcacgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgcc 317 |||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 133042 gcgacgcgctcctcgctcttgccggcgtagaacatcggcgtcgcgaccggccccggcgcc 132983 Query: 318 acgctgttggccgtgatgcccgtcccggcgagctccttggccagcaccttggtcatcgcc 377 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 132982 acgctgttcgccgtgatccccgtcccggcgagctccttggccagcaccttcgtcatcgcc 132923 Query: 378 tccacggccgccttcgtcgccacgtacgcgccatagcctggccggagcgaccccacgttc 437 ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| Sbjct: 132922 tccaccgccgccttcgtcgccacgtacgcgccgtacccgggccggagggaccccacgttg 132863 Query: 438 gacgacgagaaggtgactatccgcccgccgccgcctctgacgagccgccgggccgcctgc 497 ||||||||||||||||| | |||||||||||||| | | |||||||| ||||||| Sbjct: 132862 gacgacgagaaggtgacgacgcgcccgccgccgccgcgcgccagccgccgcgccgcctcg 132803 Query: 498 cggcagcacaggaacgtgccgcgcgcgtt 526 ||||||||||||||||||||||||||||| Sbjct: 132802 cggcagcacaggaacgtgccgcgcgcgtt 132774
>ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA Length = 804 Score = 67.9 bits (34), Expect = 3e-08 Identities = 130/162 (80%) Strand = Plus / Minus Query: 365 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 424 |||||||||| ||||||| |||||||| ||||| ||||||| | || || |||||||| Sbjct: 561 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 502 Query: 425 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 484 |||||| ||| |||||||||||| || || || ||||| | |||||| | | ||||| Sbjct: 501 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 442 Query: 485 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 526 || |||| |||||||||||||| |||||||||||||| Sbjct: 441 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 400
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 3e-08 Identities = 130/162 (80%) Strand = Plus / Minus Query: 365 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 424 |||||||||| ||||||| |||||||| ||||| ||||||| | || || |||||||| Sbjct: 30496626 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 30496567 Query: 425 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 484 |||||| ||| |||||||||||| || || || ||||| | |||||| | | ||||| Sbjct: 30496566 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 30496507 Query: 485 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 526 || |||| |||||||||||||| |||||||||||||| Sbjct: 30496506 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 30496465
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 67.9 bits (34), Expect = 3e-08 Identities = 130/162 (80%) Strand = Plus / Minus Query: 365 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 424 |||||||||| ||||||| |||||||| ||||| ||||||| | || || |||||||| Sbjct: 28199 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 28140 Query: 425 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 484 |||||| ||| |||||||||||| || || || ||||| | |||||| | | ||||| Sbjct: 28139 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 28080 Query: 485 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 526 || |||| |||||||||||||| |||||||||||||| Sbjct: 28079 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 28038
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 3e-08 Identities = 130/162 (80%) Strand = Plus / Minus Query: 365 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 424 |||||||||| ||||||| |||||||| ||||| ||||||| | || || |||||||| Sbjct: 30588048 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 30587989 Query: 425 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 484 |||||| ||| |||||||||||| || || || ||||| | |||||| | | ||||| Sbjct: 30587988 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 30587929 Query: 485 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 526 || |||| |||||||||||||| |||||||||||||| Sbjct: 30587928 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 30587887
>dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full insert sequence Length = 1022 Score = 67.9 bits (34), Expect = 3e-08 Identities = 130/162 (80%) Strand = Plus / Minus Query: 365 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 424 |||||||||| ||||||| |||||||| ||||| ||||||| | || || |||||||| Sbjct: 665 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 606 Query: 425 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 484 |||||| ||| |||||||||||| || || || ||||| | |||||| | | ||||| Sbjct: 605 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 546 Query: 485 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 526 || |||| |||||||||||||| |||||||||||||| Sbjct: 545 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 504
>ref|XM_476748.1| Oryza sativa (japonica cultivar-group), mRNA Length = 786 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 138 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 197 ||||| ||||||||||||||||| | |||| |||||||||| ||||| ||||||||| Sbjct: 770 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 711 Query: 198 accgg 202 ||||| Sbjct: 710 accgg 706
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 138 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 197 ||||| ||||||||||||||||| | |||| |||||||||| ||||| ||||||||| Sbjct: 3744831 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 3744772 Query: 198 accgg 202 ||||| Sbjct: 3744771 accgg 3744767 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 124 acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||||| || ||||||||||| || ||||||||||| | |||| |||||||||| Sbjct: 22363512 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 22363458 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 371 catcgcctccacggccgccttcgtcgccacgtacgcg 407 ||||||||||||||||||||||| |||| ||||||| Sbjct: 22363265 catcgcctccacggccgccttcgacgccgtgtacgcg 22363229 Score = 48.1 bits (24), Expect = 0.030 Identities = 63/76 (82%) Strand = Plus / Minus Query: 261 acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 320 |||||||||||| |||||||||| |||||||| ||| || | ||||||||| ||| Sbjct: 22363375 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 22363316 Query: 321 ctgttggccgtgatgc 336 | |||||||||||||| Sbjct: 22363315 cagttggccgtgatgc 22363300 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 126 acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||| || |||||||| || || ||||||||||| ||||| |||||||||| Sbjct: 3745454 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 3745506
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 138 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 197 ||||| ||||||||||||||||| | |||| |||||||||| ||||| ||||||||| Sbjct: 89182 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 89123 Query: 198 accgg 202 ||||| Sbjct: 89122 accgg 89118 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 126 acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||| || |||||||| || || ||||||||||| ||||| |||||||||| Sbjct: 89805 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 89857
>ref|XM_478715.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 124 acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||||| || ||||||||||| || ||||||||||| | |||| |||||||||| Sbjct: 796 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 742 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 371 catcgcctccacggccgccttcgtcgccacgtacgcg 407 ||||||||||||||||||||||| |||| ||||||| Sbjct: 549 catcgcctccacggccgccttcgacgccgtgtacgcg 513 Score = 48.1 bits (24), Expect = 0.030 Identities = 63/76 (82%) Strand = Plus / Minus Query: 261 acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 320 |||||||||||| |||||||||| |||||||| ||| || | ||||||||| ||| Sbjct: 659 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 600 Query: 321 ctgttggccgtgatgc 336 | |||||||||||||| Sbjct: 599 cagttggccgtgatgc 584
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 124 acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||||| || ||||||||||| || ||||||||||| | |||| |||||||||| Sbjct: 168758 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 168704 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 371 catcgcctccacggccgccttcgtcgccacgtacgcg 407 ||||||||||||||||||||||| |||| ||||||| Sbjct: 168511 catcgcctccacggccgccttcgacgccgtgtacgcg 168475 Score = 48.1 bits (24), Expect = 0.030 Identities = 63/76 (82%) Strand = Plus / Minus Query: 261 acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 320 |||||||||||| |||||||||| |||||||| ||| || | ||||||||| ||| Sbjct: 168621 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 168562 Query: 321 ctgttggccgtgatgc 336 | |||||||||||||| Sbjct: 168561 cagttggccgtgatgc 168546
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 124 acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||||| || ||||||||||| || ||||||||||| | |||| |||||||||| Sbjct: 24579 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 24525 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 371 catcgcctccacggccgccttcgtcgccacgtacgcg 407 ||||||||||||||||||||||| |||| ||||||| Sbjct: 24332 catcgcctccacggccgccttcgacgccgtgtacgcg 24296 Score = 48.1 bits (24), Expect = 0.030 Identities = 63/76 (82%) Strand = Plus / Minus Query: 261 acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 320 |||||||||||| |||||||||| |||||||| ||| || | ||||||||| ||| Sbjct: 24442 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 24383 Query: 321 ctgttggccgtgatgc 336 | |||||||||||||| Sbjct: 24382 cagttggccgtgatgc 24367
>gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of the complete genome Length = 11684 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 298 tggcgaccggccccggcgccacg 320 ||||||||||||||||||||||| Sbjct: 9869 tggcgaccggccccggcgccacg 9891
>gb|DQ058415.1| Rhizobium etli strain 8C-3 plasmid clone REB01, partial sequence Length = 118287 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 492 gcctgccggcagcacaggaacgtgccgcgc 521 |||||||||||||| |||| |||||||||| Sbjct: 56993 gcctgccggcagcaaaggagcgtgccgcgc 56964
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 368 ggtcatcgcctccacggccgccttcg 393 ||||||||| |||||||||||||||| Sbjct: 1004067 ggtcatcgcttccacggccgccttcg 1004042 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 307 gccccggcgccacgctgttggccgtgat 334 ||||||||||||||| |||| ||||||| Sbjct: 841860 gccccggcgccacgcagttgaccgtgat 841833
>gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasmid p42d, complete sequence Length = 371254 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 492 gcctgccggcagcacaggaacgtgccgcgc 521 |||||||||||||| |||| |||||||||| Sbjct: 269822 gcctgccggcagcaaaggagcgtgccgcgc 269851
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 372 atcgcctccacggccgccttcg 393 |||||||||||||||||||||| Sbjct: 854306 atcgcctccacggccgccttcg 854327
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 cggccccggcgccacgctgttg 326 |||||||||||||||||||||| Sbjct: 3286018 cggccccggcgccacgctgttg 3285997
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 accggccccggcgccacgctg 323 ||||||||||||||||||||| Sbjct: 602785 accggccccggcgccacgctg 602805
>ref|XM_476749.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Minus Query: 126 acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 178 ||||| || |||||||| || || ||||||||||| ||||| |||||||||| Sbjct: 791 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 739
>ref|XM_547634.2| PREDICTED: Canis familiaris similar to Histamine H4 receptor (HH4R) (GPRv53) (G-protein coupled receptor 105) (GPCR105) (SP9144) (AXOR35) (LOC490512), mRNA Length = 1188 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 cattaaaattgctagagtaatgcga 32 |||||||| |||||||||||||||| Sbjct: 66 cattaaaaatgctagagtaatgcga 42
>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster, complete sequence Length = 49461 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 ggcgagctccttggccagcac 364 ||||||||||||||||||||| Sbjct: 17352 ggcgagctccttggccagcac 17372
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 343 cggcgagctccttggccagcacctt 367 |||||||||||||||||||| |||| Sbjct: 6483473 cggcgagctccttggccagcgcctt 6483497 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 cgagctccttggccagcacct 366 ||||||||||||||||||||| Sbjct: 964439 cgagctccttggccagcacct 964459
>dbj|AK110469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-G12, full insert sequence Length = 3020 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 cggcgagctccttggccagca 363 ||||||||||||||||||||| Sbjct: 2583 cggcgagctccttggccagca 2563
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 204 gccacgtccgccggctcgccgatgcgctt 232 ||||| ||| ||||||||||||||||||| Sbjct: 2964840 gccacctcctccggctcgccgatgcgctt 2964868
>ref|XM_483028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 948 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cccgccgccgcctctgacga 480 |||||||||||||||||||| Sbjct: 406 cccgccgccgcctctgacga 425
>ref|NM_196814.1| Oryza sativa (japonica cultivar-group) putative short-chain alcohol dehydrogenase (OSJNBa0018F16.12), mRNA Length = 786 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 caggaacgtgccgcgcgcgttgac 529 |||||||||||||||| ||||||| Sbjct: 405 caggaacgtgccgcgcacgttgac 382
>ref|NM_193622.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 ttcgtcgccacgtacgcgcc 409 |||||||||||||||||||| Sbjct: 978 ttcgtcgccacgtacgcgcc 959
>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBb0061M13, complete sequence Length = 174910 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 ccgccgccgcctctgacgag 481 |||||||||||||||||||| Sbjct: 110612 ccgccgccgcctctgacgag 110631
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 503 gcacaggaacgtgccgcgcgcgttgacc 530 ||||||||| ||||||||||||||||| Sbjct: 4062883 gcacaggaaactgccgcgcgcgttgacc 4062910
>emb|AL157395.17| Human DNA sequence from clone RP11-414H17 on chromosome 10 Contains the 5' end of the IL2RA gene for interleukin 2 receptor, alpha (CD25,IL2R,TCGFR), a ribosomal protein L32 (RPL32) pseudogene, the gene for splicing factor (45kD) (SPF45)(MGC14439), the 5' end of the PFKFB3 gene for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, four novel genes and five CpG islands, complete sequence Length = 174839 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tccgcccgccgccgcctctg 476 |||||||||||||||||||| Sbjct: 33491 tccgcccgccgccgcctctg 33510
>emb|CR680878.1|CNS0FOBE Tetraodon nigroviridis full-length cDNA Length = 1525 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctccttggccagcaccttgg 369 |||||||||||||||||||| Sbjct: 198 ctccttggccagcaccttgg 179
>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis Length = 265677 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 acgcgctcctcggacttccc 280 |||||||||||||||||||| Sbjct: 44909 acgcgctcctcggacttccc 44928
>gb|BC039322.1| Homo sapiens RNA binding motif protein 17, mRNA (cDNA clone MGC:43415 IMAGE:5267008), complete cds Length = 2063 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tccgcccgccgccgcctctg 476 |||||||||||||||||||| Sbjct: 51 tccgcccgccgccgcctctg 70
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 gtggcgaccggccccggcgccacg 320 ||||| |||||||||||||||||| Sbjct: 293230 gtggccaccggccccggcgccacg 293253
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cagcaccttggtcatcgcct 378 |||||||||||||||||||| Sbjct: 276831 cagcaccttggtcatcgcct 276812
>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence Length = 265677 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 acgcgctcctcggacttccc 280 |||||||||||||||||||| Sbjct: 44909 acgcgctcctcggacttccc 44928
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 caggaacgtgccgcgcgcgttgac 529 |||||||||||||||| ||||||| Sbjct: 29060 caggaacgtgccgcgcacgttgac 29037
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 caggaacgtgccgcgcgcgttgac 529 |||||||||||||||| ||||||| Sbjct: 16150171 caggaacgtgccgcgcacgttgac 16150148
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cccgccgccgcctctgacga 480 |||||||||||||||||||| Sbjct: 23944931 cccgccgccgcctctgacga 23944950
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 ccgccgccgcctctgacgag 481 |||||||||||||||||||| Sbjct: 10941408 ccgccgccgcctctgacgag 10941427
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ttcgtcgccacgtacgcgcc 409 |||||||||||||||||||| Sbjct: 22189012 ttcgtcgccacgtacgcgcc 22189031
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 cgagccgccgggccgcctgccggc 501 |||| ||||||||||||||||||| Sbjct: 2853432 cgagtcgccgggccgcctgccggc 2853409
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 agcctggccggagcgacccc 431 |||||||||||||||||||| Sbjct: 463864 agcctggccggagcgacccc 463845
>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1112D09 Length = 125920 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ttcgtcgccacgtacgcgcc 409 |||||||||||||||||||| Sbjct: 84498 ttcgtcgccacgtacgcgcc 84517
>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0419H09 Length = 143533 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cccgccgccgcctctgacga 480 |||||||||||||||||||| Sbjct: 78082 cccgccgccgcctctgacga 78101
>dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118E15, full insert sequence Length = 1184 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 caggaacgtgccgcgcgcgttgac 529 |||||||||||||||| ||||||| Sbjct: 460 caggaacgtgccgcgcacgttgac 483
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ccggcgccacgtccgccggc 218 |||||||||||||||||||| Sbjct: 2030584 ccggcgccacgtccgccggc 2030603 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctccttggccagcaccttgg 369 |||||||||||||||||||| Sbjct: 1341871 ctccttggccagcaccttgg 1341852
>gb|AY103687.1| Zea mays PCO106710 mRNA sequence Length = 1242 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 cctccacggccgccttcgtcgcca 399 |||||||||||||||||| ||||| Sbjct: 119 cctccacggccgccttcgccgcca 142
>gb|AY104176.1| Zea mays PCO083783 mRNA sequence Length = 1312 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 cgcctccacggccgccttcg 393 |||||||||||||||||||| Sbjct: 455 cgcctccacggccgccttcg 436
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 caggaacgtgccgcgcgcgttgac 529 |||||||||||||||| ||||||| Sbjct: 16158412 caggaacgtgccgcgcacgttgac 16158389 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,735,554 Number of Sequences: 3902068 Number of extensions: 3735554 Number of successful extensions: 76445 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73730 Number of HSP's gapped (non-prelim): 2706 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
