ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCX3_MESTA (P83400) Neurotoxin BtITx3 precursor (Neurotoxin BTChl1) 30 3.3
2NOX3_HUMAN (Q9HBY0) NADPH oxidase 3 (EC 1.6.3.-) (gp91phox homol... 30 4.4
3SRY_ELADA (Q863B7) Sex-determining region Y protein (Testis-dete... 30 5.7
4SRY_CERAL (Q863C0) Sex-determining region Y protein (Testis-dete... 30 5.7
5SRY_AXIPR (Q863C2) Sex-determining region Y protein (Testis-dete... 29 9.7

>SCX3_MESTA (P83400) Neurotoxin BtITx3 precursor (Neurotoxin BTChl1)|
          Length = 60

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 299 SLLPCLFWRLFVPTNSSACCPVCFGTRPSVE 207
           ++L   F  + + T+S A CP CF T P++E
Sbjct: 7   TILIAFFLTVMIATHSEARCPPCFTTNPNME 37



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>NOX3_HUMAN (Q9HBY0) NADPH oxidase 3 (EC 1.6.3.-) (gp91phox homolog 3) (GP91-3)|
           (Mitogenic oxidase 2)
          Length = 568

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 2   YNLHLYHEKESQ*GTCLLFLLKKIGNNSQESY 97
           +NL  YH  +S+    LL  L K+GN   ESY
Sbjct: 122 FNLERYHWSQSEEAQGLLAALSKLGNTPNESY 153



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>SRY_ELADA (Q863B7) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 229

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 194 TWAPFQLKDGCQNKQGSRLMS--*LAQTVSRTN 286
           T  PF  +DGC N  GSR+ S   L+Q+V+ TN
Sbjct: 151 TLQPFTYRDGCANTTGSRMESQLSLSQSVTITN 183



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>SRY_CERAL (Q863C0) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 229

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 194 TWAPFQLKDGCQNKQGSRLMS--*LAQTVSRTN 286
           T  PF  +DGC N  GSR+ S   L+Q+V+ TN
Sbjct: 151 TLQPFTYRDGCANTTGSRMESQLSLSQSVTITN 183



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>SRY_AXIPR (Q863C2) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 229

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 194 TWAPFQLKDGCQNKQGSRLMS--*LAQTVSRTN 286
           T  PF  +DGC N  GSR+ S   L+Q+V+ TN
Sbjct: 151 TLQPFIYRDGCANTTGSRMESQLSLSQSVTITN 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,855,557
Number of Sequences: 219361
Number of extensions: 1545570
Number of successful extensions: 3382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3382
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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