ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27c04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ238590.1|TSP238590 Triticum sp. mRNA for E2F protein Length = 1974 Score = 299 bits (151), Expect = 5e-78 Identities = 256/288 (88%), Gaps = 6/288 (2%) Strand = Plus / Minus Query: 1 gtataacctccatttatatcatgaaaaagagtcacaataggggacttgcctactgttttt 60 |||||| |||||||||||| |||||| ||||||||| ||||||||| |||||||||||| Sbjct: 1941 gtataaactccatttatataatgaaa--gagtcacaacaggggacttccctactgttttt 1884 Query: 61 gctcaaaaagattggtaataattcccaagagagctacaaagccactattgccttgcaaaa 120 ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1883 gctcaaaaagattcgtattaattcccaagagagctacagagccactattgccttgcaaaa 1824 Query: 121 tatactcaattagaaattaaataagacagacaccggaatgttcatagtggtccgaattca 180 |||||||| ||||| |||||| |||| ||| |||||| ||||| | ||||||||| Sbjct: 1823 tatactcagttaga---gaaataaagcagatacc-gaatgtgcatagcagcccgaattca 1768 Query: 181 cggtgcaatatgcacatgggcgccttttcaactgaaggacgggtgccaaaacaaacaggg 240 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || Sbjct: 1767 aggtgcaatatgcacatgggcgccttttcaactgaaggacaggtgccagaacaaacaagg 1708 Query: 241 cagcaggctgatgagttagttggcacaaacagtctccagaacaaacag 288 |||||| ||||| ||||||||||||| || ||||||| ||||||||| Sbjct: 1707 cagcagactgataagttagttggcaccaatcgtctccataacaaacag 1660 Score = 196 bits (99), Expect = 5e-47 Identities = 114/119 (95%) Strand = Plus / Minus Query: 426 ctgaaacagcactccaggaatttcagatgtcaagttttcaccgccatgaccttatggtcg 485 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 1593 ctgaaacagcactccaggaattccatatgtcaagttttcaccgccatgaccttatggttg 1534 Query: 486 atccatgcttggaacctccatccgcggactatgatgtgcatgtgggctgctaacatctt 544 ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct: 1533 atccatgcttggaacctgcatccgcggactatgatgtgcatgtgggatgctaacatctt 1475 Score = 182 bits (92), Expect = 8e-43 Identities = 119/128 (92%) Strand = Plus / Minus Query: 276 ccagaacaaacagggcagcagactgataggttagttagcaccaacagtctccacaacaaa 335 |||||||||||| ||||||||||||||| ||||||| ||||||| ||||||| |||||| Sbjct: 1722 ccagaacaaacaaggcagcagactgataagttagttggcaccaatcgtctccataacaaa 1663 Query: 336 caacaaattcagaacggtgatcagtctaaacttgctgccctgatctttcaattttgaaat 395 || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 1662 cagcaaattcagaacggtgatcagtctgaacttgctgccctgatctttccattttgaaat 1603 Query: 396 cagtattt 403 |||||||| Sbjct: 1602 cagtattt 1595
>dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05M24, TM0338, complete sequence Length = 94745 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 agtctccacaacaaacaacaaat 343 ||||||||||||||||||||||| Sbjct: 56590 agtctccacaacaaacaacaaat 56568
>dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079c, complete sequence Length = 109022 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 agtctccacaacaaacaacaaat 343 ||||||||||||||||||||||| Sbjct: 30046 agtctccacaacaaacaacaaat 30068
>dbj|AP004250.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47K21, TM0260, complete sequence Length = 79947 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 agtctccacaacaaacaacaaat 343 ||||||||||||||||||||||| Sbjct: 11044 agtctccacaacaaacaacaaat 11066
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 444 aatttcagatgtcaagttttca 465 |||||||||||||||||||||| Sbjct: 388561 aatttcagatgtcaagttttca 388540
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 444 aatttcagatgtcaagttttca 465 |||||||||||||||||||||| Sbjct: 388561 aatttcagatgtcaagttttca 388540
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 444 aatttcagatgtcaagttttca 465 |||||||||||||||||||||| Sbjct: 95879 aatttcagatgtcaagttttca 95858
>dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01C14, TM0359, complete sequence Length = 112181 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 67129 gtctccacaacaaacaacaaat 67150
>dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT05D12, TM0303, complete sequence Length = 123806 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 51827 gtctccacaacaaacaacaaat 51806
>dbj|AP006131.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28E04, TM0229, complete sequence Length = 95108 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 13782 gtctccacaacaaacaacaaat 13761
>dbj|AP006118.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT47H13, TM0201, complete sequence Length = 79882 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 37776 gtctccacaacaaacaacaaat 37797
>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181, complete sequence Length = 185320 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 172112 gtctccacaacaaacaacaaat 172091
>dbj|AP006076.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19M07, TM0114, complete sequence Length = 94533 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 71851 gtctccacaacaaacaacaaat 71830
>dbj|AP004936.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02L13, TM0095c, complete sequence Length = 63750 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 59877 gtctccacaacaaacaacaaat 59898
>dbj|AP004471.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT15H09, TM0005, complete sequence Length = 97710 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 gtctccacaacaaacaacaaat 343 |||||||||||||||||||||| Sbjct: 14182 gtctccacaacaaacaacaaat 14203
>gb|AE014313.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 10 of 11 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 aaaaagattggtaataattcccaag 89 ||||||||| ||||||||||||||| Sbjct: 225624 aaaaagattagtaataattcccaag 225648
>emb|AL445123.11| Human DNA sequence from clone RP11-242F11 on chromosome 6 Contains the 3' part of a novel gene and a novel gene, complete sequence Length = 120709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 tcaattagaaattaaataaga 146 ||||||||||||||||||||| Sbjct: 17253 tcaattagaaattaaataaga 17273
>emb|AL159982.17| Human DNA sequence from clone RP11-94P17 on chromosome 13 Contains the 3' end of a novel gene (FLJ25324) and a novel gene, complete sequence Length = 162414 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 aaaaagattggtaataattcccaag 89 ||||||||| ||||||||||||||| Sbjct: 25952 aaaaagattagtaataattcccaag 25976
>gb|AC078874.13| Homo sapiens 12 BAC RP11-781C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166450 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 atctttcaattttgaaatcag 398 ||||||||||||||||||||| Sbjct: 129209 atctttcaattttgaaatcag 129229
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 atttcagatgtcaagttttca 465 ||||||||||||||||||||| Sbjct: 1615010 atttcagatgtcaagttttca 1614990
>gb|AC016257.22|AC016257 Homo sapiens 12 BAC RP11-61E11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161096 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 atctttcaattttgaaatcag 398 ||||||||||||||||||||| Sbjct: 101856 atctttcaattttgaaatcag 101876
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 atttcagatgtcaagttttca 465 ||||||||||||||||||||| Sbjct: 142498 atttcagatgtcaagttttca 142478
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 atttcagatgtcaagttttca 465 ||||||||||||||||||||| Sbjct: 14510 atttcagatgtcaagttttca 14490
>gb|AC122117.10| Mus musculus chromosome 18, clone RP23-61O22, complete sequence Length = 207024 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 atactcaattagaaattaaa 141 |||||||||||||||||||| Sbjct: 105155 atactcaattagaaattaaa 105136
>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence Length = 195273 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aaggacgggtgccaaaacaa 234 |||||||||||||||||||| Sbjct: 93514 aaggacgggtgccaaaacaa 93533
>gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, complete sequence Length = 173087 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaattaaataagacagacac 153 |||||||||||||||||||| Sbjct: 101784 aaattaaataagacagacac 101765
>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence Length = 262483 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aacaaacaacaaattcagaa 349 |||||||||||||||||||| Sbjct: 5102 aacaaacaacaaattcagaa 5083
>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence Length = 211515 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aacaaacaacaaattcagaa 349 |||||||||||||||||||| Sbjct: 155040 aacaaacaacaaattcagaa 155021
>emb|AL357619.15| Human DNA sequence from clone RP11-703H16 on chromosome 6 Contains the 3' end of the PPIL4 gene for peptidylprolyl isomerase (cyclophilin)-like 4 (HDCME13P), complete sequence Length = 28805 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ctttcaattttgaaatcagt 399 |||||||||||||||||||| Sbjct: 6818 ctttcaattttgaaatcagt 6799
>gb|AC093120.4| Mus musculus Strain C57BL6/J Chromosome 6 BAC, RP23-125A24, Complete Sequence, complete sequence Length = 187794 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 caaaacaaacagggcagcaggctg 250 ||||||||||||||||| |||||| Sbjct: 43830 caaaacaaacagggcaggaggctg 43853
>gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosome 6, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 caaaacaaacagggcagcaggctg 250 ||||||||||||||||| |||||| Sbjct: 126486 caaaacaaacagggcaggaggctg 126509
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence Length = 134519 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 ctttcaattttgaaatcagtattt 403 |||||||||||||||||| ||||| Sbjct: 54425 ctttcaattttgaaatcaatattt 54448
>gb|AC079596.11| Homo sapiens 12 BAC RP11-632N20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 103998 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 aaatatactcaattagaaattaaa 141 ||||| |||||||||||||||||| Sbjct: 42911 aaataaactcaattagaaattaaa 42934
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 ccgccatgaccttatggtcgatcc 489 |||||||||||||||| ||||||| Sbjct: 859445 ccgccatgaccttatgctcgatcc 859468
>gb|AC025835.7| Homo sapiens chromosome 18, clone RP11-185H18, complete sequence Length = 146399 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 atgtgcatgtgggctgctaa 538 |||||||||||||||||||| Sbjct: 100803 atgtgcatgtgggctgctaa 100784
>dbj|AK147610.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1088M20 product:hypothetical protein, full insert sequence Length = 9711 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 atactcaattagaaattaaa 141 |||||||||||||||||||| Sbjct: 335 atactcaattagaaattaaa 354
>gb|AC092706.3| Homo sapiens chromosome 18, clone RP11-658P14, complete sequence Length = 178059 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 atgtgcatgtgggctgctaa 538 |||||||||||||||||||| Sbjct: 19011 atgtgcatgtgggctgctaa 18992
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tttcagatgtcaagttttca 465 |||||||||||||||||||| Sbjct: 430283 tttcagatgtcaagttttca 430264
>gb|AC016543.6|AC016543 Homo sapiens chromosome 14q24.3 clone RP11-516J2 containing hERRB2 gene, partial cds, complete sequence Length = 196784 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tagaaattaaataagacaga 150 |||||||||||||||||||| Sbjct: 10280 tagaaattaaataagacaga 10299
>emb|AL928990.4| Zebrafish DNA sequence from clone CH211-11F8, complete sequence Length = 185618 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 caattagaaattaaataaga 146 |||||||||||||||||||| Sbjct: 51251 caattagaaattaaataaga 51232
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tttcagatgtcaagttttca 465 |||||||||||||||||||| Sbjct: 430283 tttcagatgtcaagttttca 430264
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 tttcagatgtcaagttttca 465 |||||||||||||||||||| Sbjct: 116489 tttcagatgtcaagttttca 116508
>gb|AC000123.1|HSAC000123 Human Cosmid g0771a106, complete sequence Length = 42879 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 aacaaacaacaaattcagaa 349 |||||||||||||||||||| Sbjct: 12572 aacaaacaacaaattcagaa 12591
>dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0489a, complete sequence Length = 72531 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gtctccacaacaaacaacaa 341 |||||||||||||||||||| Sbjct: 29174 gtctccacaacaaacaacaa 29155
>dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39E03, TM0266, complete sequence Length = 113459 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gtctccacaacaaacaacaa 341 |||||||||||||||||||| Sbjct: 18343 gtctccacaacaaacaacaa 18362
>gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, complete sequence Length = 150101 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaattaaataagacagacac 153 |||||||||||||||||||| Sbjct: 18494 aaattaaataagacagacac 18475 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,605,870 Number of Sequences: 3902068 Number of extensions: 5605870 Number of successful extensions: 109914 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109634 Number of HSP's gapped (non-prelim): 279 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
