ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNS2_ARATH (P42814) Ribonuclease 2 precursor (EC 3.1.27.1) 57 4e-08
2SYE_PYRAE (Q8ZU33) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 30 5.3
3YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region 29 6.9
4R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like prot... 29 9.0
5YKX2_CAEEL (P34327) Hypothetical protein C13G5.2 29 9.0

>RNS2_ARATH (P42814) Ribonuclease 2 precursor (EC 3.1.27.1)|
          Length = 259

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 22/51 (43%), Positives = 36/51 (70%)
 Frame = -2

Query: 521 ICKKGSVQELRLCFTKDLKPRDCLTTSAMYKNLSKSKHCPRKISLPTYDPI 369
           +CK+ ++ E+R+CF KD KPRDC+ +    ++L+  K CP+ +SLP Y P+
Sbjct: 197 VCKRDAIDEIRICFYKDFKPRDCVGS----QDLTSRKSCPKYVSLPEYTPL 243



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>SYE_PYRAE (Q8ZU33) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 570

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 341 QSPVVNWRVRWDHMLAGRFFEGNALISI 424
           Q P VN  + WD ML GRF EG A++ I
Sbjct: 223 QPPEVNLEL-WDKMLEGRFKEGEAVLRI 249



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>YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region|
          Length = 132

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 497 ELRLCFTKDLKPRDCLTTSAMYKNLSKSKHC 405
           E+R CF+  L+ R C +TSA     S  K C
Sbjct: 3   EVRSCFSSALRRRQCASTSAAVSATSSPKTC 33



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>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1|
          Length = 1054

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -3

Query: 427  TYRNQSIALEKSPCQHMIPSYSPIHHWRLSQKPATMGCTSLHPKILSIAGLRGNRCLHGP 248
            +YRN      KS C  ++    P++H+    K     CTSL+   LS      N  L GP
Sbjct: 922  SYRNLQTLSIKSSCDTLVKF--PLNHFANLDKLEVDQCTSLYSLELS------NEHLRGP 973

Query: 247  DCLQDL 230
            + L++L
Sbjct: 974  NALRNL 979



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>YKX2_CAEEL (P34327) Hypothetical protein C13G5.2|
          Length = 351

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 322 LSLASGTISSGELASTMGSYVGREIFRG 405
           L+  SGT SSG + +  GS +G  IF G
Sbjct: 238 LAATSGTYSSGSIGAYAGSVIGTSIFPG 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,240,258
Number of Sequences: 219361
Number of extensions: 1549218
Number of successful extensions: 3775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3773
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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