Clone Name | rbart27b04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK121862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103A19, full insert sequence Length = 1113 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 444 agtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttcttgaac 503 |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 751 agtagtaaggcaatcaaggggcttcaaatctttgtcaaagcataacctcagttcttcaac 692 Query: 504 tgagcccttcttgca 518 ||||||||||||||| Sbjct: 691 tgagcccttcttgca 677 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 365 gtacgatgggatcatatgttggcagggagatttttcgagggcaat 409 |||| ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 830 gtactatggggtcatatgttggcagggtgatgtatcgagggcaat 786
>dbj|AK105061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-H09, full insert sequence Length = 1245 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 444 agtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttcttgaac 503 |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 781 agtagtaaggcaatcaaggggcttcaaatctttgtcaaagcataacctcagttcttcaac 722 Query: 504 tgagcccttcttgca 518 ||||||||||||||| Sbjct: 721 tgagcccttcttgca 707 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 365 gtacgatgggatcatatgttggcagggagatttttcgagggcaat 409 |||| ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 860 gtactatggggtcatatgttggcagggtgatgtatcgagggcaat 816
>dbj|AK100403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086O14, full insert sequence Length = 1222 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 444 agtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttcttgaac 503 |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 771 agtagtaaggcaatcaaggggcttcaaatctttgtcaaagcataacctcagttcttcaac 712 Query: 504 tgagcccttcttgca 518 ||||||||||||||| Sbjct: 711 tgagcccttcttgca 697 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 365 gtacgatgggatcatatgttggcagggagatttttcgagggcaat 409 |||| ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 850 gtactatggggtcatatgttggcagggtgatgtatcgagggcaat 806
>dbj|AK065055.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J04, full insert sequence Length = 1107 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 444 agtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttcttgaac 503 |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 780 agtagtaaggcaatcaaggggcttcaaatctttgtcaaagcataacctcagttcttcaac 721 Query: 504 tgagcccttcttgca 518 ||||||||||||||| Sbjct: 720 tgagcccttcttgca 706 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 365 gtacgatgggatcatatgttggcagggagatttttcgagggcaat 409 |||| ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 859 gtactatggggtcatatgttggcagggtgatgtatcgagggcaat 815
>dbj|AK061505.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E09, full insert sequence Length = 1242 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 444 agtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttcttgaac 503 |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 779 agtagtaaggcaatcaaggggcttcaaatctttgtcaaagcataacctcagttcttcaac 720 Query: 504 tgagcccttcttgca 518 ||||||||||||||| Sbjct: 719 tgagcccttcttgca 705 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 365 gtacgatgggatcatatgttggcagggagatttttcgagggcaat 409 |||| ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 858 gtactatggggtcatatgttggcagggtgatgtatcgagggcaat 814
>gb|BT016738.1| Zea mays clone Contig571 mRNA sequence Length = 1070 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 442 gaagtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttctt 499 ||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||| Sbjct: 808 gaagtggtaaggcaatcacgaggcttcaattctttgtcgaagcataacctaagttctt 751
>gb|AY107592.1| Zea mays PCO142364 mRNA sequence Length = 1160 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 442 gaagtagtaaggcaatcacgaggcttcaaatctttggtgaagcataaccttagttctt 499 ||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||| Sbjct: 744 gaagtggtaaggcaatcacgaggcttcaattctttgtcgaagcataacctaagttctt 687
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 465 cttcaaatctttggtgaagcataaccttagttcttgaactgagcccttcttgca 518 ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| Sbjct: 38985362 cttcaaatctttgtcaaagcataacctcagttcttcaactgagcccttcttgca 38985415 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 370 atgggatcatatgttggcagggagatttttcgagggcaat 409 ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 38984708 atggggtcatatgttggcagggtgatgtatcgagggcaat 38984747
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 465 cttcaaatctttggtgaagcataaccttagttcttgaactgagcccttcttgca 518 ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| Sbjct: 58995 cttcaaatctttgtcaaagcataacctcagttcttcaactgagcccttcttgca 59048 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 370 atgggatcatatgttggcagggagatttttcgagggcaat 409 ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 58341 atggggtcatatgttggcagggtgatgtatcgagggcaat 58380
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 465 cttcaaatctttggtgaagcataaccttagttcttgaactgagcccttcttgca 518 ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| Sbjct: 3342 cttcaaatctttgtcaaagcataacctcagttcttcaactgagcccttcttgca 3395 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 370 atgggatcatatgttggcagggagatttttcgagggcaat 409 ||||| |||||||||||||||| ||| | ||||||||||| Sbjct: 2688 atggggtcatatgttggcagggtgatgtatcgagggcaat 2727
>gb|AY105459.1| Zea mays PCO134887 mRNA sequence Length = 676 Score = 48.1 bits (24), Expect = 0.029 Identities = 57/68 (83%) Strand = Plus / Minus Query: 453 gcaatcacgaggcttcaaatctttggtgaagcataaccttagttcttgaactgagccctt 512 |||||||||||||| |||| ||| |||||| | ||| ||||||||||||||||| || Sbjct: 304 gcaatcacgaggctgataatccttgtggaagcagagcctgagttcttgaactgagccgtt 245 Query: 513 cttgcaga 520 ||| |||| Sbjct: 244 cttacaga 237
>ref|XM_758089.1| Theileria parva strain Muguga chromosome 3 Fe-hydrogenase (TP03_0164) partial mRNA Length = 1995 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 104 gttttataaatattcagaacataat 128 |||||| |||||||||||||||||| Sbjct: 1511 gttttagaaatattcagaacataat 1535
>emb|CR555290.8| Zebrafish DNA sequence from clone DKEYP-10A10 in linkage group 10, complete sequence Length = 83568 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 396 ttttcgagggcaatgctttgatttcgata 424 |||| |||||||||| ||||||||||||| Sbjct: 6403 tttttgagggcaatggtttgatttcgata 6431
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cattttactgggatcttagtg 212 ||||||||||||||||||||| Sbjct: 451535 cattttactgggatcttagtg 451515
>emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 in linkage group 10, complete sequence Length = 167229 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 396 ttttcgagggcaatgctttgatttcgata 424 |||| |||||||||| ||||||||||||| Sbjct: 149120 tttttgagggcaatggtttgatttcgata 149148
>emb|BX571689.20| Zebrafish DNA sequence from clone DKEY-181H23 in linkage group 24, complete sequence Length = 154608 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tacatgcaactttcattattc 63 ||||||||||||||||||||| Sbjct: 127521 tacatgcaactttcattattc 127541
>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete sequence Length = 152776 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 atttccagcagttttataaatatt 117 |||||||||| ||||||||||||| Sbjct: 49642 atttccagcatttttataaatatt 49665
>gb|AC133165.3| Mus musculus BAC clone RP24-357P16 from chromosome 13, complete sequence Length = 181278 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cagcaatgctcagtatctta 299 |||||||||||||||||||| Sbjct: 76784 cagcaatgctcagtatctta 76803
>emb|CR936218.6| Human DNA sequence from clone RP11-669E14, complete sequence Length = 213739 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 attgaactaagttgttctaa 146 |||||||||||||||||||| Sbjct: 15837 attgaactaagttgttctaa 15856
>emb|AL591410.8| Mouse DNA sequence from clone RP23-96I2 on chromosome 11 Contains part of the Myo1d gene for myosin ID, complete sequence Length = 231675 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ttagtgcccagcatctgtgg 226 |||||||||||||||||||| Sbjct: 171021 ttagtgcccagcatctgtgg 171040
>emb|BX927298.8| Zebrafish DNA sequence from clone CH211-15J1 in linkage group 1, complete sequence Length = 81258 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 gcagttttataaatattcag 120 |||||||||||||||||||| Sbjct: 78170 gcagttttataaatattcag 78189
>emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in linkage group 3 Contains three CpG islands, complete sequence Length = 153837 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ttataaatattcagaacata 126 |||||||||||||||||||| Sbjct: 135053 ttataaatattcagaacata 135034
>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence Length = 198381 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cattttactgggatcttagt 211 |||||||||||||||||||| Sbjct: 82135 cattttactgggatcttagt 82116
>gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, complete sequence Length = 158560 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 catgcaactttcattattcataca 68 |||||||||||||||||| ||||| Sbjct: 49338 catgcaactttcattattaataca 49361
>gb|AC091628.2| Homo sapiens chromosome 17 map 17q21.1, complete sequence Length = 201397 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 attgaactaagttgttctaa 146 |||||||||||||||||||| Sbjct: 191276 attgaactaagttgttctaa 191257
>gb|AC024934.38| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204819 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 gaggcatctgagctgagtat 90 |||||||||||||||||||| Sbjct: 111993 gaggcatctgagctgagtat 112012
>gb|AC004139.2| Homo sapiens chromosome 17, clone RP5-843B9, complete sequence Length = 126231 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 attgaactaagttgttctaa 146 |||||||||||||||||||| Sbjct: 53556 attgaactaagttgttctaa 53575
>gb|AC040168.8| Homo sapiens chromosome 16 clone RP11-461O7, complete sequence Length = 170154 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agagacccattttactggga 204 |||||||||||||||||||| Sbjct: 35317 agagacccattttactggga 35336
>gb|AC007495.9| Homo sapiens chromosome 16 clone RP11-355E10, complete sequence Length = 198575 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agagacccattttactggga 204 |||||||||||||||||||| Sbjct: 9126 agagacccattttactggga 9145
>gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, complete sequence Length = 164548 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tacatgcaactttcattatt 62 |||||||||||||||||||| Sbjct: 18279 tacatgcaactttcattatt 18260
>emb|BX890540.5| Zebrafish DNA sequence from clone DKEY-211C3 in linkage group 19, complete sequence Length = 170919 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tacatgcaactttcattatt 62 |||||||||||||||||||| Sbjct: 36728 tacatgcaactttcattatt 36709
>emb|CR790380.7| Zebrafish DNA sequence from clone DKEY-238N5 in linkage group 6, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tataaatattcagaacataa 127 |||||||||||||||||||| Sbjct: 112562 tataaatattcagaacataa 112581
>emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in linkage group 24, complete sequence Length = 251421 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tacatgcaactttcattattcata 66 ||||||||| |||||||||||||| Sbjct: 54479 tacatgcaattttcattattcata 54456 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,603,914 Number of Sequences: 3902068 Number of extensions: 4603914 Number of successful extensions: 82664 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82578 Number of HSP's gapped (non-prelim): 86 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)