ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27a12 |
|---|---|
| Clone Library Name | barley_pub |
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 34.7 bits (78), Expect = 0.19 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = -3 Query: 471 VQTAPPY--DPSRPVYNPPVAVHCRNPQTESFLQLLELPYLLDSSNPGGVDT-----NVS 313 + T PP +P P PPV V P S + LLE ++DSS P DT N++ Sbjct: 74 IGTRPPVVAEPG-PAIRPPVVVDTIGPTDPSVISLLEESAVIDSSIPVPTDTSHGGFNIT 132 Query: 312 SSQAAPA 292 SS + P+ Sbjct: 133 SSASGPS 139
>PSBD_POPDE (Q9XQA8) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G+A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGWASSYLEGCNFLTAAVSTPAN 84
>PSBD_GALSU (P28253) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 351 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 49 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPAN 82
>PSBD_SPIOL (P06005) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 50 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 83
>PSBD_PEA (P06006) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 50 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 83
>PSBD_CYAPA (P48079) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 50 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 83
>PSBD_ARATH (P56761) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 50 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 83
>PSBD_TOBAC (P69686) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_SECCE (P10803) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_SACOF (Q6ENY1) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_SACHY (Q6L3B1) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_PINTH (P41644) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_ORYSA (P12095) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_ORYNI (Q6ENJ1) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_OENHO (Q9MTN1) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_MARPO (P06404) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_MAIZE (P48184) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_LOTJA (Q9BBT0) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_HORVU (P11849) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_ANTMA (P69685) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_ANTFO (Q85AC9) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_ADICA (Q85FM2) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
>PSBD_PORPU (P51357) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 351 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 49 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 82
>PSBD_ODOSI (P49478) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 351 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 49 TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 82
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/72 (27%), Positives = 29/72 (40%) Frame = +3 Query: 228 FTPHHLRHLQLHRGTLWRRRQAQVLPESSTHLYQPHQD*TSPADMGVLTTGETIPFVGSC 407 F P L H+ RG RRR A + + P D+ V+ + +P C Sbjct: 1021 FDPAALAHIAARRGAPLRRRAAWM------------RQIADPEDVRVVVLYDPLPHEELC 1068 Query: 408 NEPLQGDYKLAW 443 EP +G + AW Sbjct: 1069 AEPAEGAPRPAW 1080
>PSBD_CHLVU (P56319) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A SYL+GC++L A+ N Sbjct: 50 TGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPAN 83
>PSBD_CHLRE (P06007) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A SYL+GC++L A+ N Sbjct: 50 TGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPAN 83
>PSBD_WHEAT (Q36814) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 353 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 51 TGTTFVTSWYTHGVASSYLEGCNFLTAAVSTPAN 84
>PSBD_CYACA (Q9TM47) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 351 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRALLQKEN 94 T T+FV G A+SYL+GC++L A+ N Sbjct: 49 TGTTFVSSWYTHGLASSYLEGCNFLTAAVSSPAN 82
>BTBD1_MOUSE (P58544) BTB/POZ domain-containing protein 1 (Glucose signal| repressing protein) Length = 488 Score = 29.6 bits (65), Expect = 6.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 295 RCCLRARHICINPTRIRRVQQIWEF*QLEKRFRLWV 402 RCCLR + CIN R ++V+ W + R R V Sbjct: 328 RCCLRGKECCIN--RFQQVESRWGYSGTSDRIRFTV 361
>BTBD1_HUMAN (Q9H0C5) BTB/POZ domain-containing protein 1 (Hepatitis C virus| NS5A-transactivated protein 8) (NS5ATP8) Length = 482 Score = 29.6 bits (65), Expect = 6.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 295 RCCLRARHICINPTRIRRVQQIWEF*QLEKRFRLWV 402 RCCLR + CIN R ++V+ W + R R V Sbjct: 322 RCCLRGKECCIN--RFQQVESRWGYSGTSDRIRFTV 355
>TP53B_HUMAN (Q12888) Tumor suppressor p53-binding protein 1 (p53-binding| protein 1) (p53BP1) (53BP1) Length = 1972 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +3 Query: 348 SPADMGVLTTGETIPFVGSCNEPLQGDYKLAWTDHKVEQSGQN 476 SP D+G+ TG++ + S +E Q + + H++++ G+N Sbjct: 500 SPEDLGLSLTGDSCKLMLSTSEYSQSPKMESLSSHRIDEDGEN 542
>PSBD_SYNP2 (P20898) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII| D2 protein) Length = 352 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 195 TRTSFVVLSCVQGFAASYLDGCHYLCRAL 109 T T+FV G A+SYL+GC++L A+ Sbjct: 50 TGTTFVTSWYTHGLASSYLEGCNFLTVAV 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,119,163 Number of Sequences: 219361 Number of extensions: 1597740 Number of successful extensions: 4685 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4667 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
