ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart27a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 406 e-110
2dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 406 e-110
3ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 3e-08
5gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 68 3e-08
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
8ref|XM_476748.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
10dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
11ref|XM_478715.1| Oryza sativa (japonica cultivar-group), mRNA 54 5e-04
12dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
13dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
14gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of... 46 0.11
15gb|DQ058415.1| Rhizobium etli strain 8C-3 plasmid clone REB01, p... 44 0.44
16gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 44 0.44
17gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasm... 44 0.44
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.44
19gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.44
20gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.7
21ref|XM_476749.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
22gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynth... 42 1.7
23dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.7
24dbj|AK110469.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
25emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.7
26ref|XM_483028.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.8
27ref|NM_196814.1| Oryza sativa (japonica cultivar-group) putative... 40 6.8
28ref|NM_193622.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
29gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
30emb|AL157395.17| Human DNA sequence from clone RP11-414H17 on ch... 40 6.8
31emb|CR680878.1|CNS0FOBE Tetraodon nigroviridis full-length cDNA 40 6.8
32emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigrovi... 40 6.8
33gb|BC039322.1| Homo sapiens RNA binding motif protein 17, mRNA (... 40 6.8
34gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.8
35gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.8
36emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence 40 6.8
37gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.8
43dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.8
44dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
45dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
46dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
47emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 6.8
48gb|AY103687.1| Zea mays PCO106710 mRNA sequence 40 6.8
49gb|AY104176.1| Zea mays PCO083783 mRNA sequence 40 6.8
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  406 bits (205), Expect = e-110
 Identities = 343/389 (88%)
 Strand = Plus / Minus

                                                                           
Query: 114     ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 173
               ||||| ||||| || |||||||| |||||||||||||||||    ||||| ||||| |||
Sbjct: 4287941 ttgacacgaatgacttggccgttgatccacccggcggcgtcggtgcagaggaagcccacc 4287882

                                                                           
Query: 174     accggcgccacgtccgccggctcgccgatgcgcttcatggggcactcgctggcgacggcc 233
               |||||||||||||||  |||||||||||| |||  ||| |||||||||| ||||||||| 
Sbjct: 4287881 accggcgccacgtccatcggctcgccgatccgccccatcgggcactcgccggcgacggca 4287822

                                                                           
Query: 234     ctcacgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgcc 293
                  ||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 4287821 gcgacgcgctcctcgctcttgccggcgtagaacatcggcgtcgcgaccggccccggcgcc 4287762

                                                                           
Query: 294     acgctgttggccgtgatgcccgtcccggcgagctccttggccagcaccttggtcatcgcc 353
               |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4287761 acgctgttcgccgtgatccccgtcccggcgagctccttggccagcaccttcgtcatcgcc 4287702

                                                                           
Query: 354     tccacggccgccttcgtcgccacgtacgcgccatagcctggccggagcgaccccacgttc 413
               ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 4287701 tccaccgccgccttcgtcgccacgtacgcgccgtacccgggccggagggaccccacgttg 4287642

                                                                           
Query: 414     gacgacgagaaggtgactatccgcccgccgccgcctctgacgagccgccgggccgcctgc 473
               ||||||||||||||||| |  |||||||||||||| |   | |||||||| |||||||  
Sbjct: 4287641 gacgacgagaaggtgacgacgcgcccgccgccgccgcgcgccagccgccgcgccgcctcg 4287582

                                            
Query: 474     cggcagcacaggaacgtgccgcgcgcgtt 502
               |||||||||||||||||||||||||||||
Sbjct: 4287581 cggcagcacaggaacgtgccgcgcgcgtt 4287553
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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0554A06
          Length = 165311

 Score =  406 bits (205), Expect = e-110
 Identities = 343/389 (88%)
 Strand = Plus / Minus

                                                                          
Query: 114    ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 173
              ||||| ||||| || |||||||| |||||||||||||||||    ||||| ||||| |||
Sbjct: 133162 ttgacacgaatgacttggccgttgatccacccggcggcgtcggtgcagaggaagcccacc 133103

                                                                          
Query: 174    accggcgccacgtccgccggctcgccgatgcgcttcatggggcactcgctggcgacggcc 233
              |||||||||||||||  |||||||||||| |||  ||| |||||||||| ||||||||| 
Sbjct: 133102 accggcgccacgtccatcggctcgccgatccgccccatcgggcactcgccggcgacggca 133043

                                                                          
Query: 234    ctcacgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgcc 293
                 ||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 133042 gcgacgcgctcctcgctcttgccggcgtagaacatcggcgtcgcgaccggccccggcgcc 132983

                                                                          
Query: 294    acgctgttggccgtgatgcccgtcccggcgagctccttggccagcaccttggtcatcgcc 353
              |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 132982 acgctgttcgccgtgatccccgtcccggcgagctccttggccagcaccttcgtcatcgcc 132923

                                                                          
Query: 354    tccacggccgccttcgtcgccacgtacgcgccatagcctggccggagcgaccccacgttc 413
              ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 132922 tccaccgccgccttcgtcgccacgtacgcgccgtacccgggccggagggaccccacgttg 132863

                                                                          
Query: 414    gacgacgagaaggtgactatccgcccgccgccgcctctgacgagccgccgggccgcctgc 473
              ||||||||||||||||| |  |||||||||||||| |   | |||||||| |||||||  
Sbjct: 132862 gacgacgagaaggtgacgacgcgcccgccgccgccgcgcgccagccgccgcgccgcctcg 132803

                                           
Query: 474    cggcagcacaggaacgtgccgcgcgcgtt 502
              |||||||||||||||||||||||||||||
Sbjct: 132802 cggcagcacaggaacgtgccgcgcgcgtt 132774
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>ref|XM_469741.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                       
Query: 341 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 400
           |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 561 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 502

                                                                       
Query: 401 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 460
           |||||| |||  |||||||||||| || || || ||||| | |||||| |   | |||||
Sbjct: 501 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 442

                                                     
Query: 461 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 502
               || ||||  |||||||||||||| ||||||||||||||
Sbjct: 441 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 400
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                            
Query: 341      cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 400
                |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 30496626 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 30496567

                                                                            
Query: 401      cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 460
                |||||| |||  |||||||||||| || || || ||||| | |||||| |   | |||||
Sbjct: 30496566 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 30496507

                                                          
Query: 461      ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 502
                    || ||||  |||||||||||||| ||||||||||||||
Sbjct: 30496506 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 30496465
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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                         
Query: 341   cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 400
             |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 28199 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 28140

                                                                         
Query: 401   cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 460
             |||||| |||  |||||||||||| || || || ||||| | |||||| |   | |||||
Sbjct: 28139 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 28080

                                                       
Query: 461   ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 502
                 || ||||  |||||||||||||| ||||||||||||||
Sbjct: 28079 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 28038
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                            
Query: 341      cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 400
                |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 30588048 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 30587989

                                                                            
Query: 401      cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 460
                |||||| |||  |||||||||||| || || || ||||| | |||||| |   | |||||
Sbjct: 30587988 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 30587929

                                                          
Query: 461      ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 502
                    || ||||  |||||||||||||| ||||||||||||||
Sbjct: 30587928 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 30587887
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>dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full
           insert sequence
          Length = 1022

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 130/162 (80%)
 Strand = Plus / Minus

                                                                       
Query: 341 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 400
           |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 665 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 606

                                                                       
Query: 401 cgaccccacgttcgacgacgagaaggtgactatccgcccgccgccgcctctgacgagccg 460
           |||||| |||  |||||||||||| || || || ||||| | |||||| |   | |||||
Sbjct: 605 cgacccgacgcccgacgacgagaacgtcacgatgcgcccccggccgccgcgcgccagccg 546

                                                     
Query: 461 ccgggccgcctgccggcagcacaggaacgtgccgcgcgcgtt 502
               || ||||  |||||||||||||| ||||||||||||||
Sbjct: 545 gttcgcggcctcgcggcagcacaggaaggtgccgcgcgcgtt 504
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>ref|XM_476748.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 786

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 114 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 173
           ||||| ||||||||||||||||| | |||| ||||||||||    ||||| |||||||||
Sbjct: 770 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 711

                
Query: 174 accgg 178
           |||||
Sbjct: 710 accgg 706
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 114     ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 173
               ||||| ||||||||||||||||| | |||| ||||||||||    ||||| |||||||||
Sbjct: 3744831 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 3744772

                    
Query: 174     accgg 178
               |||||
Sbjct: 3744771 accgg 3744767



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 100      acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
                ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 22363512 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 22363458



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 347      catcgcctccacggccgccttcgtcgccacgtacgcg 383
                ||||||||||||||||||||||| ||||  |||||||
Sbjct: 22363265 catcgcctccacggccgccttcgacgccgtgtacgcg 22363229



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                            
Query: 237      acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 296
                ||||||||||||  |||||||||| ||||||||  ||| ||    | ||||||||| |||
Sbjct: 22363375 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 22363316

                                
Query: 297      ctgttggccgtgatgc 312
                | ||||||||||||||
Sbjct: 22363315 cagttggccgtgatgc 22363300



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 102     acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
               ||||| || |||||||| || || |||||||||||  ||||| ||||||||||
Sbjct: 3745454 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 3745506
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>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0050F10
          Length = 151986

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 114   ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 173
             ||||| ||||||||||||||||| | |||| ||||||||||    ||||| |||||||||
Sbjct: 89182 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 89123

                  
Query: 174   accgg 178
             |||||
Sbjct: 89122 accgg 89118



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 102   acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
             ||||| || |||||||| || || |||||||||||  ||||| ||||||||||
Sbjct: 89805 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 89857
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>ref|XM_478715.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 798

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 100 acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
           ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 796 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 742



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 347 catcgcctccacggccgccttcgtcgccacgtacgcg 383
           ||||||||||||||||||||||| ||||  |||||||
Sbjct: 549 catcgcctccacggccgccttcgacgccgtgtacgcg 513



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 296
           ||||||||||||  |||||||||| ||||||||  ||| ||    | ||||||||| |||
Sbjct: 659 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 600

                           
Query: 297 ctgttggccgtgatgc 312
           | ||||||||||||||
Sbjct: 599 cagttggccgtgatgc 584
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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0567H04
          Length = 181420

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 100    acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
              ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 168758 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 168704



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 347    catcgcctccacggccgccttcgtcgccacgtacgcg 383
              ||||||||||||||||||||||| ||||  |||||||
Sbjct: 168511 catcgcctccacggccgccttcgacgccgtgtacgcg 168475



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                          
Query: 237    acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 296
              ||||||||||||  |||||||||| ||||||||  ||| ||    | ||||||||| |||
Sbjct: 168621 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 168562

                              
Query: 297    ctgttggccgtgatgc 312
              | ||||||||||||||
Sbjct: 168561 cagttggccgtgatgc 168546
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>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0406F06
          Length = 144533

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 100   acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
             ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 24579 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 24525



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 347   catcgcctccacggccgccttcgtcgccacgtacgcg 383
             ||||||||||||||||||||||| ||||  |||||||
Sbjct: 24332 catcgcctccacggccgccttcgacgccgtgtacgcg 24296



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                         
Query: 237   acgcgctcctcggacttcccggcgtagaacatgggcgtggcgaccggccccggcgccacg 296
             ||||||||||||  |||||||||| ||||||||  ||| ||    | ||||||||| |||
Sbjct: 24442 acgcgctcctcgctcttcccggcgaagaacatgtccgtcgccgtggcccccggcgcgacg 24383

                             
Query: 297   ctgttggccgtgatgc 312
             | ||||||||||||||
Sbjct: 24382 cagttggccgtgatgc 24367
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>gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of the complete genome
          Length = 11684

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 274  tggcgaccggccccggcgccacg 296
            |||||||||||||||||||||||
Sbjct: 9869 tggcgaccggccccggcgccacg 9891
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>gb|DQ058415.1| Rhizobium etli strain 8C-3 plasmid clone REB01, partial sequence
          Length = 118287

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 468   gcctgccggcagcacaggaacgtgccgcgc 497
             |||||||||||||| |||| ||||||||||
Sbjct: 56993 gcctgccggcagcaaaggagcgtgccgcgc 56964
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 344     ggtcatcgcctccacggccgccttcg 369
               ||||||||| ||||||||||||||||
Sbjct: 1004067 ggtcatcgcttccacggccgccttcg 1004042



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 283    gccccggcgccacgctgttggccgtgat 310
              ||||||||||||||| |||| |||||||
Sbjct: 841860 gccccggcgccacgcagttgaccgtgat 841833
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>gb|U80928.5|REU80928 Rhizobium etli strain CFN42 symbiotic plasmid p42d, complete sequence
          Length = 371254

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 468    gcctgccggcagcacaggaacgtgccgcgc 497
              |||||||||||||| |||| ||||||||||
Sbjct: 269822 gcctgccggcagcaaaggagcgtgccgcgc 269851
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 348    atcgcctccacggccgccttcg 369
              ||||||||||||||||||||||
Sbjct: 854306 atcgcctccacggccgccttcg 854327
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 281     cggccccggcgccacgctgttg 302
               ||||||||||||||||||||||
Sbjct: 3286018 cggccccggcgccacgctgttg 3285997
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    accggccccggcgccacgctg 299
              |||||||||||||||||||||
Sbjct: 602785 accggccccggcgccacgctg 602805
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>ref|XM_476749.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 798

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 102 acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 154
           ||||| || |||||||| || || |||||||||||  ||||| ||||||||||
Sbjct: 791 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 739
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>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster,
             complete sequence
          Length = 49461

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   ggcgagctccttggccagcac 340
             |||||||||||||||||||||
Sbjct: 17352 ggcgagctccttggccagcac 17372
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 319     cggcgagctccttggccagcacctt 343
               |||||||||||||||||||| ||||
Sbjct: 6483473 cggcgagctccttggccagcgcctt 6483497



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    cgagctccttggccagcacct 342
              |||||||||||||||||||||
Sbjct: 964439 cgagctccttggccagcacct 964459
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>dbj|AK110469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-G12, full
            insert sequence
          Length = 3020

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 319  cggcgagctccttggccagca 339
            |||||||||||||||||||||
Sbjct: 2583 cggcgagctccttggccagca 2563
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 180     gccacgtccgccggctcgccgatgcgctt 208
               ||||| ||| |||||||||||||||||||
Sbjct: 2964840 gccacctcctccggctcgccgatgcgctt 2964868
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>ref|XM_483028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 cccgccgccgcctctgacga 456
           ||||||||||||||||||||
Sbjct: 406 cccgccgccgcctctgacga 425
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>ref|NM_196814.1| Oryza sativa (japonica cultivar-group) putative short-chain alcohol
           dehydrogenase (OSJNBa0018F16.12), mRNA
          Length = 786

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 482 caggaacgtgccgcgcgcgttgac 505
           |||||||||||||||| |||||||
Sbjct: 405 caggaacgtgccgcgcacgttgac 382
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>ref|NM_193622.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 ttcgtcgccacgtacgcgcc 385
           ||||||||||||||||||||
Sbjct: 978 ttcgtcgccacgtacgcgcc 959
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>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBb0061M13, complete sequence
          Length = 174910

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    ccgccgccgcctctgacgag 457
              ||||||||||||||||||||
Sbjct: 110612 ccgccgccgcctctgacgag 110631
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>emb|AL157395.17| Human DNA sequence from clone RP11-414H17 on chromosome 10 Contains the
             5' end of the IL2RA gene for interleukin 2 receptor, alpha
             (CD25,IL2R,TCGFR), a ribosomal protein L32 (RPL32)
             pseudogene, the gene for splicing factor (45kD)
             (SPF45)(MGC14439), the 5' end of the PFKFB3 gene for
             6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3,
             four novel genes and five CpG islands, complete sequence
          Length = 174839

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   tccgcccgccgccgcctctg 452
             ||||||||||||||||||||
Sbjct: 33491 tccgcccgccgccgcctctg 33510
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>emb|CR680878.1|CNS0FOBE Tetraodon nigroviridis full-length cDNA
          Length = 1525

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ctccttggccagcaccttgg 345
           ||||||||||||||||||||
Sbjct: 198 ctccttggccagcaccttgg 179
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>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis
          Length = 265677

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   acgcgctcctcggacttccc 256
             ||||||||||||||||||||
Sbjct: 44909 acgcgctcctcggacttccc 44928
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>gb|BC039322.1| Homo sapiens RNA binding motif protein 17, mRNA (cDNA clone
           MGC:43415 IMAGE:5267008), complete cds
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 tccgcccgccgccgcctctg 452
           ||||||||||||||||||||
Sbjct: 51  tccgcccgccgccgcctctg 70
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 273    gtggcgaccggccccggcgccacg 296
              ||||| ||||||||||||||||||
Sbjct: 293230 gtggccaccggccccggcgccacg 293253
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    cagcaccttggtcatcgcct 354
              ||||||||||||||||||||
Sbjct: 276831 cagcaccttggtcatcgcct 276812
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>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence
          Length = 265677

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   acgcgctcctcggacttccc 256
             ||||||||||||||||||||
Sbjct: 44909 acgcgctcctcggacttccc 44928
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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 482   caggaacgtgccgcgcgcgttgac 505
             |||||||||||||||| |||||||
Sbjct: 29060 caggaacgtgccgcgcacgttgac 29037
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 482      caggaacgtgccgcgcgcgttgac 505
                |||||||||||||||| |||||||
Sbjct: 16150171 caggaacgtgccgcgcacgttgac 16150148
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 437      cccgccgccgcctctgacga 456
                ||||||||||||||||||||
Sbjct: 23944931 cccgccgccgcctctgacga 23944950
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 438      ccgccgccgcctctgacgag 457
                ||||||||||||||||||||
Sbjct: 10941408 ccgccgccgcctctgacgag 10941427
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 366      ttcgtcgccacgtacgcgcc 385
                ||||||||||||||||||||
Sbjct: 22189012 ttcgtcgccacgtacgcgcc 22189031
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 454     cgagccgccgggccgcctgccggc 477
               |||| |||||||||||||||||||
Sbjct: 2853432 cgagtcgccgggccgcctgccggc 2853409
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    agcctggccggagcgacccc 407
              ||||||||||||||||||||
Sbjct: 463864 agcctggccggagcgacccc 463845
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>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1112D09
          Length = 125920

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   ttcgtcgccacgtacgcgcc 385
             ||||||||||||||||||||
Sbjct: 84498 ttcgtcgccacgtacgcgcc 84517
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   cccgccgccgcctctgacga 456
             ||||||||||||||||||||
Sbjct: 78082 cccgccgccgcctctgacga 78101
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>dbj|AK067745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118E15, full
           insert sequence
          Length = 1184

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 482 caggaacgtgccgcgcgcgttgac 505
           |||||||||||||||| |||||||
Sbjct: 460 caggaacgtgccgcgcacgttgac 483
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     ccggcgccacgtccgccggc 194
               ||||||||||||||||||||
Sbjct: 2030584 ccggcgccacgtccgccggc 2030603



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 326     ctccttggccagcaccttgg 345
               ||||||||||||||||||||
Sbjct: 1341871 ctccttggccagcaccttgg 1341852
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 352 cctccacggccgccttcgtcgcca 375
           |||||||||||||||||| |||||
Sbjct: 119 cctccacggccgccttcgccgcca 142
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>gb|AY104176.1| Zea mays PCO083783 mRNA sequence
          Length = 1312

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cgcctccacggccgccttcg 369
           ||||||||||||||||||||
Sbjct: 455 cgcctccacggccgccttcg 436
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 482      caggaacgtgccgcgcgcgttgac 505
                |||||||||||||||| |||||||
Sbjct: 16158412 caggaacgtgccgcgcacgttgac 16158389


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,343,149
Number of Sequences: 3902068
Number of extensions: 3343149
Number of successful extensions: 70544
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68014
Number of HSP's gapped (non-prelim): 2521
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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