ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart27a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197855.1| Oryza sativa (japonica cultivar-group) putative carnitine/acylcarnitine translocase (OSJNBa0003O19.8), mRNA Length = 1105 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Minus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 929 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 870 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 869 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 810 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 809 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 750 Query: 360 gtcgggta 367 |||||||| Sbjct: 749 gtcgggta 742
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Plus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 22255157 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 22255216 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 22255217 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 22255276 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 22255277 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 22255336 Query: 360 gtcgggta 367 |||||||| Sbjct: 22255337 gtcgggta 22255344 Score = 73.8 bits (37), Expect = 3e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 207 ttggccgggacgctgcgcgccatggccggcccgaaccccctgtacagacccctggccccg 266 ||||||||||| || || |||||||| || || |||||| |||||| ||| | | || Sbjct: 22257922 ttggccgggacactacgagccatggcaggtccaaaccccttgtacaagcccttcactcca 22257981 Query: 267 tcggcggcgaggatcttcttgaacgcgtccatggagcccgagtactttgggttcttgaag 326 ||||| ||||| ||||||||||| ||||| | || || |||||| |||| |||||| || Sbjct: 22257982 tcggccgcgagaatcttcttgaaagcgtcgactgaccctgagtaccttggcttcttgtag 22258041 Query: 327 tcgtccacctggagcacgctcttgaccacgtcggtcgggta 367 || |||||||| | ||||||||| || |||||||| ||||| Sbjct: 22258042 tcatccacctgaatcacgctcttcacgacgtcggtagggta 22258082
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Plus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 72400 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 72459 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 72460 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 72519 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 72520 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 72579 Query: 360 gtcgggta 367 |||||||| Sbjct: 72580 gtcgggta 72587 Score = 73.8 bits (37), Expect = 3e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 207 ttggccgggacgctgcgcgccatggccggcccgaaccccctgtacagacccctggccccg 266 ||||||||||| || || |||||||| || || |||||| |||||| ||| | | || Sbjct: 75165 ttggccgggacactacgagccatggcaggtccaaaccccttgtacaagcccttcactcca 75224 Query: 267 tcggcggcgaggatcttcttgaacgcgtccatggagcccgagtactttgggttcttgaag 326 ||||| ||||| ||||||||||| ||||| | || || |||||| |||| |||||| || Sbjct: 75225 tcggccgcgagaatcttcttgaaagcgtcgactgaccctgagtaccttggcttcttgtag 75284 Query: 327 tcgtccacctggagcacgctcttgaccacgtcggtcgggta 367 || |||||||| | ||||||||| || |||||||| ||||| Sbjct: 75285 tcatccacctgaatcacgctcttcacgacgtcggtagggta 75325
>dbj|AK103988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A08, full insert sequence Length = 1209 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Minus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 1033 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 974 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 973 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 914 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 913 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 854 Query: 360 gtcgggta 367 |||||||| Sbjct: 853 gtcgggta 846
>dbj|AK099409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003D17, full insert sequence Length = 1230 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Minus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 1052 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 993 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 992 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 933 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 932 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 873 Query: 360 gtcgggta 367 |||||||| Sbjct: 872 gtcgggta 865
>dbj|AK072102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114C17, full insert sequence Length = 1230 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Minus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 1052 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 993 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 992 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 933 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 932 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 873 Query: 360 gtcgggta 367 |||||||| Sbjct: 872 gtcgggta 865
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 198 bits (100), Expect = 9e-48 Identities = 166/188 (88%) Strand = Plus / Plus Query: 180 acctcgtaggcgaggaagcaggcgccgttggccgggacgctgcgcgccatggccggcccg 239 ||||||||||| | |||||||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 22267225 acctcgtaggccaagaagcaggcggcgttggcggggacactgcgcgccatggccgggccg 22267284 Query: 240 aaccccctgtacagacccctggccccgtcggcggcgaggatcttcttgaacgcgtccatg 299 || ||| |||| || ||| || | ||||||||||||||||||||| |||| ||||||||| Sbjct: 22267285 aagcccttgtagaggcccttgacgccgtcggcggcgaggatcttcctgaaggcgtccatg 22267344 Query: 300 gagcccgagtactttgggttcttgaagtcgtccacctggagcacgctcttgaccacgtcg 359 ||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 22267345 gagccggagtacttggggttcttgtagtcgtccacctggatgacgctcttcaccacgtcc 22267404 Query: 360 gtcgggta 367 |||||||| Sbjct: 22267405 gtcgggta 22267412 Score = 73.8 bits (37), Expect = 3e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 207 ttggccgggacgctgcgcgccatggccggcccgaaccccctgtacagacccctggccccg 266 ||||||||||| || || |||||||| || || |||||| |||||| ||| | | || Sbjct: 22269990 ttggccgggacactacgagccatggcaggtccaaaccccttgtacaagcccttcactcca 22270049 Query: 267 tcggcggcgaggatcttcttgaacgcgtccatggagcccgagtactttgggttcttgaag 326 ||||| ||||| ||||||||||| ||||| | || || |||||| |||| |||||| || Sbjct: 22270050 tcggccgcgagaatcttcttgaaagcgtcgactgaccctgagtaccttggcttcttgtag 22270109 Query: 327 tcgtccacctggagcacgctcttgaccacgtcggtcgggta 367 || |||||||| | ||||||||| || |||||||| ||||| Sbjct: 22270110 tcatccacctgaatcacgctcttcacgacgtcggtagggta 22270150
>ref|NM_197856.1| Oryza sativa (japonica cultivar-group) putative carnitine/acylcarnitine translocase (OSJNBa0003O19.7), mRNA Length = 1580 Score = 73.8 bits (37), Expect = 3e-10 Identities = 130/161 (80%) Strand = Plus / Minus Query: 207 ttggccgggacgctgcgcgccatggccggcccgaaccccctgtacagacccctggccccg 266 ||||||||||| || || |||||||| || || |||||| |||||| ||| | | || Sbjct: 920 ttggccgggacactacgagccatggcaggtccaaaccccttgtacaagcccttcactcca 861 Query: 267 tcggcggcgaggatcttcttgaacgcgtccatggagcccgagtactttgggttcttgaag 326 ||||| ||||| ||||||||||| ||||| | || || |||||| |||| |||||| || Sbjct: 860 tcggccgcgagaatcttcttgaaagcgtcgactgaccctgagtaccttggcttcttgtag 801 Query: 327 tcgtccacctggagcacgctcttgaccacgtcggtcgggta 367 || |||||||| | ||||||||| || |||||||| ||||| Sbjct: 800 tcatccacctgaatcacgctcttcacgacgtcggtagggta 760
>gb|AE005835.1| Caulobacter crescentus CB15 section 161 of 359 of the complete genome Length = 10301 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 205 cgttggccgggacgctgcgcgccatggc 232 ||||||||| |||||||||||||||||| Sbjct: 1715 cgttggccgagacgctgcgcgccatggc 1742
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 264 ccgtcggcggcgaggatcttcttgaacgcgtcca 297 ||||||||| ||||||||||||||| ||||||| Sbjct: 3996924 ccgtcggcgaggaggatcttcttgaaggcgtcca 3996891
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 262 ccccgtcggcggcgaggatcttcttg 287 |||||| ||||||||||||||||||| Sbjct: 1216678 ccccgtaggcggcgaggatcttcttg 1216653
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 264 ccgtcggcggcgaggatcttcttgaacgcgtcca 297 ||||||||| ||||||||||||||| ||||||| Sbjct: 102444 ccgtcggcgaggaggatcttcttgaaggcgtcca 102477
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 264 ccgtcggcggcgaggatcttcttgaacgcgtcca 297 ||||||||| ||||||||||||||| ||||||| Sbjct: 3997035 ccgtcggcgaggaggatcttcttgaaggcgtcca 3997002
>ref|XM_427639.1| PREDICTED: Gallus gallus similar to LIM-homeobox protein (LOC430081), partial mRNA Length = 371 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 gacgctgcgcgccatggccgg 235 ||||||||||||||||||||| Sbjct: 245 gacgctgcgcgccatggccgg 265
>gb|AC093240.2| Homo sapiens chromosome 5 clone RP11-103P4, complete sequence Length = 163673 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gataactgaatcatcagggtg 93 ||||||||||||||||||||| Sbjct: 74480 gataactgaatcatcagggtg 74500
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 220 tgcgcgccatggccggcccgaaccc 244 |||||||||||||||||| |||||| Sbjct: 4076902 tgcgcgccatggccggcctgaaccc 4076926
>gb|AC117455.8| Homo sapiens 3 BAC RP11-307B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 73181 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tcagggtggaggaacaataac 106 ||||||||||||||||||||| Sbjct: 34948 tcagggtggaggaacaataac 34968
>ref|XM_423843.1| PREDICTED: Gallus gallus similar to FGF receptor activating protein 1 isoform (LOC426179), mRNA Length = 1025 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gtggatgtgcagaaaccagc 142 |||||||||||||||||||| Sbjct: 987 gtggatgtgcagaaaccagc 1006
>gb|AC123557.4| Mus musculus BAC clone RP23-183P22 from 1, complete sequence Length = 198349 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 atcatcagggtggaggaaca 101 |||||||||||||||||||| Sbjct: 16744 atcatcagggtggaggaaca 16725
>emb|BX548254.7| Zebrafish DNA sequence from clone CH211-243D12 in linkage group 16, complete sequence Length = 149138 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagaaaccagcagcctgcttgctg 155 |||||||||||||||| ||||||| Sbjct: 19438 cagaaaccagcagccttcttgctg 19461
>gb|AC087441.9| Homo sapiens chromosome 11, clone RP11-438N5, complete sequence Length = 151606 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ccagcagcctgcttgctggt 157 |||||||||||||||||||| Sbjct: 53566 ccagcagcctgcttgctggt 53585
>gb|AC107970.4| Homo sapiens chromosome 11, clone CTD-2238L16, complete sequence Length = 155365 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ccagcagcctgcttgctggt 157 |||||||||||||||||||| Sbjct: 26881 ccagcagcctgcttgctggt 26900
>gb|AC079811.6| Homo sapiens BAC clone CTD-2502L6 from 2, complete sequence Length = 130618 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cagaggcaggactgtccaaa 68 |||||||||||||||||||| Sbjct: 8068 cagaggcaggactgtccaaa 8049
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 ggaagcaggcgccgttggccggga 216 |||||||||||||| ||||||||| Sbjct: 3369013 ggaagcaggcgccgctggccggga 3369036
>gb|BC040598.1| Homo sapiens cDNA clone IMAGE:5270493 Length = 2400 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cagaggcaggactgtccaaa 68 |||||||||||||||||||| Sbjct: 1546 cagaggcaggactgtccaaa 1565
>dbj|AP000903.6| Homo sapiens genomic DNA, chromosome 11q clone:RP11-700I2, complete sequence Length = 119082 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gggttcttgaagtcgtccac 334 |||||||||||||||||||| Sbjct: 74176 gggttcttgaagtcgtccac 74195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,944,874 Number of Sequences: 3902068 Number of extensions: 2944874 Number of successful extensions: 52319 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52123 Number of HSP's gapped (non-prelim): 192 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
