ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart26h12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Minus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 864 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 805 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 804 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 745 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 744 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 698
>ref|XM_506899.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1148_D05.19 mRNA Length = 1322 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Minus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 869 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 810 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 809 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 750 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 749 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 703
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Plus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 28454025 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 28454084 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 28454085 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 28454144 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 28454145 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 28454191 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgcaaaacttggtcgtcgtc 45 |||||||||||||||||||| Sbjct: 34813675 tgcaaaacttggtcgtcgtc 34813694
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Plus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 78146 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 78205 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 78206 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 78265 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 78266 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 78312
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Plus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 22866 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 22925 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 22926 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 22985 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 22986 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 23032
>dbj|AK104818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A01, full insert sequence Length = 1305 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Minus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 864 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 805 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 804 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 745 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 744 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 698
>dbj|AK066953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A21, full insert sequence Length = 1321 Score = 212 bits (107), Expect = 7e-52 Identities = 152/167 (91%) Strand = Plus / Minus Query: 267 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 326 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 868 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 809 Query: 327 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 386 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 808 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 749 Query: 387 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 748 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgag 702
>ref|XM_473723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 141 bits (71), Expect = 2e-30 Identities = 138/159 (86%), Gaps = 6/159 (3%) Strand = Plus / Minus Query: 269 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 719 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 660 Query: 329 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 388 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 659 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 603 Query: 389 acgctgctcttgtcgctgctgccgccgcttgtgctcgtg 427 ||||||||||||||||| | ||||||||||| ||||| Sbjct: 602 acgctgctcttgtcgctcc---cgccgcttgtggtcgtg 567
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 141 bits (71), Expect = 2e-30 Identities = 138/159 (86%), Gaps = 6/159 (3%) Strand = Plus / Plus Query: 269 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 5254 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 5313 Query: 329 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 388 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 5314 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 5370 Query: 389 acgctgctcttgtcgctgctgccgccgcttgtgctcgtg 427 ||||||||||||||||| | ||||||||||| ||||| Sbjct: 5371 acgctgctcttgtcgctcc---cgccgcttgtggtcgtg 5406
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 141 bits (71), Expect = 2e-30 Identities = 138/159 (86%), Gaps = 6/159 (3%) Strand = Plus / Plus Query: 269 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 29868502 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 29868561 Query: 329 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 388 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 29868562 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 29868618 Query: 389 acgctgctcttgtcgctgctgccgccgcttgtgctcgtg 427 ||||||||||||||||| | ||||||||||| ||||| Sbjct: 29868619 acgctgctcttgtcgctcc---cgccgcttgtggtcgtg 29868654 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 352 ggtggccggcggggtcgacggcg 374 ||||||||||||||||||||||| Sbjct: 8086574 ggtggccggcggggtcgacggcg 8086552
>dbj|AK069139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F14, full insert sequence Length = 1474 Score = 141 bits (71), Expect = 2e-30 Identities = 138/159 (86%), Gaps = 6/159 (3%) Strand = Plus / Minus Query: 269 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 983 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 924 Query: 329 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 388 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 923 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 867 Query: 389 acgctgctcttgtcgctgctgccgccgcttgtgctcgtg 427 ||||||||||||||||| | ||||||||||| ||||| Sbjct: 866 acgctgctcttgtcgctcc---cgccgcttgtggtcgtg 831
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 141 bits (71), Expect = 2e-30 Identities = 138/159 (86%), Gaps = 6/159 (3%) Strand = Plus / Plus Query: 269 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 149428 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 149487 Query: 329 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 388 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 149488 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 149544 Query: 389 acgctgctcttgtcgctgctgccgccgcttgtgctcgtg 427 ||||||||||||||||| | ||||||||||| ||||| Sbjct: 149545 acgctgctcttgtcgctcc---cgccgcttgtggtcgtg 149580
>gb|AY107136.1| Zea mays PCO101290 mRNA sequence Length = 678 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 278 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgctt 327 |||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 314 acgatgaggctgccgaacggggcgcggtgcgggatgcccttgcggcgctt 265
>gb|AY022797.1| Oryza sativa microsatellite MRG5122 containing (CGC)X8, closest to marker R3393, genomic sequence Length = 224 Score = 69.9 bits (35), Expect = 7e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 395 ctcttgtcgctgctgccgccgcttgtgctcgtgcacgag 433 ||||||||||||||||||||||| ||||||||||||||| Sbjct: 1 ctcttgtcgctgctgccgccgctggtgctcgtgcacgag 39
>ref|NM_197866.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0003O19.3), mRNA Length = 1190 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 278 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 755 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 705
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 278 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 22309910 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 22309960 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cggcggggtcgacggcgaga 377 |||||||||||||||||||| Sbjct: 20957730 cggcggggtcgacggcgaga 20957711
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 278 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 127153 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 127203
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 278 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 328 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 22321978 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 22322028 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cggcggggtcgacggcgaga 377 |||||||||||||||||||| Sbjct: 20968994 cggcggggtcgacggcgaga 20968975
>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05, complete sequence Length = 152329 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 352 ggtggccggcggggtcgacggcg 374 ||||||||||||||||||||||| Sbjct: 148698 ggtggccggcggggtcgacggcg 148676
>emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0045P24, complete sequence Length = 124420 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 352 ggtggccggcggggtcgacggcg 374 ||||||||||||||||||||||| Sbjct: 20106 ggtggccggcggggtcgacggcg 20084
>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 3/8 Length = 347625 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 309 ggatgcccttgcggcgcttgtt 330 |||||||||||||||||||||| Sbjct: 289159 ggatgcccttgcggcgcttgtt 289180
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 ggatgcccttgcggcgcttgtt 330 |||||||||||||||||||||| Sbjct: 100687 ggatgcccttgcggcgcttgtt 100666
>gb|DQ353853.1| Triticum aestivum AP2 domain transcription factor TaDREB3 mRNA, complete cds Length = 1004 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 ggcggggtcgacggcgagaagc 380 |||||||||||||||||||||| Sbjct: 429 ggcggggtcgacggcgagaagc 408
>gb|AF243074.1|AF243074 Stigmatella aurantiaca 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (aroAA2) gene, complete cds Length = 1515 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 165 tcgccgttcagggcgcgcagct 186 |||||||||||||||||||||| Sbjct: 605 tcgccgttcagggcgcgcagct 584
>gb|AY439015.3| Mycobacterium smegmatis isolate mc2 155 insertion sequence IS1096 TnpA (tnpA) and TnpR genes, complete cds; and GPL gene cluster, complete sequence Length = 67229 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 350 gaggtggccggcggggtcgacg 371 |||||||||||||||||||||| Sbjct: 61002 gaggtggccggcggggtcgacg 61023
>gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, complete sequence Length = 95468 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 agtatactgtatattgcaaaa 32 ||||||||||||||||||||| Sbjct: 6382 agtatactgtatattgcaaaa 6362
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 tgctggaggtggccggcgggg 365 ||||||||||||||||||||| Sbjct: 2247196 tgctggaggtggccggcgggg 2247176
>dbj|AB193035.1| Corynebacterium glutamicum DNA, strain specific island 8, strain: R Length = 45095 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 tggaggtggccggcggggtcg 368 ||||||||||||||||||||| Sbjct: 4602 tggaggtggccggcggggtcg 4622
>ref|NM_197639.1| Oryza sativa (japonica cultivar-group) putative outer envelope protein (OSJNBa0082M15.3), mRNA Length = 3275 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcggggtcgacggcgaga 377 |||||||||||||||||||| Sbjct: 9 cggcggggtcgacggcgaga 28
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccggcggggtcgacggcga 375 |||||||||||||||||||| Sbjct: 435 gccggcggggtcgacggcga 416
>ref|XM_470526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 987 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 402 cgctgctgccgccgcttgtgctcgtgca 429 |||||||||||||||| |||||||||| Sbjct: 158 cgctgctgccgccgctgctgctcgtgca 185
>ref|XM_953828.1| Neurospora crassa OR74A hypothetical protein (NCU09342.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 tgctcttgtcgctgctgccgccgc 416 |||||||| ||||||||||||||| Sbjct: 391 tgctcttgccgctgctgccgccgc 368
>ref|XM_332033.1| Neurospora crassa OR74A hypothetical protein (NCU09342.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 tgctcttgtcgctgctgccgccgc 416 |||||||| ||||||||||||||| Sbjct: 391 tgctcttgccgctgctgccgccgc 368
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 cgctgctgccgccgcttgtgctcgtgca 429 |||||||||||||||| |||||||||| Sbjct: 4117972 cgctgctgccgccgctgctgctcgtgca 4117945
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ccacgctgctcttgtcgctg 406 |||||||||||||||||||| Sbjct: 994016 ccacgctgctcttgtcgctg 993997
>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3' end of a novel gene, a novel gene and the KIRREL gene for kin of IRRE like (Drosophila), complete sequence Length = 189477 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtatactgtatattgcaaaa 32 |||||||||||||||||||| Sbjct: 153048 gtatactgtatattgcaaaa 153067
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 ctgctggaggtggccggcggggtc 367 ||||||||||||| |||||||||| Sbjct: 52432 ctgctggaggtggacggcggggtc 52455
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 ctgctggaggtggccggcggggtc 367 ||||||||||||| |||||||||| Sbjct: 317355 ctgctggaggtggacggcggggtc 317378
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 ctgctggaggtggccggcggggtc 367 ||||||||||||| |||||||||| Sbjct: 5292 ctgctggaggtggacggcggggtc 5269
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 388 cacgctgctcttgtcgctgctgccgccgcttgtgct 423 ||||||||| ||| ||||||||||||||| ||||| Sbjct: 63647 cacgctgctgctgtggctgctgccgccgctggtgct 63682
>emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in linkage group 17, complete sequence Length = 154593 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 actacagtatactgtatattgcaa 30 ||||| |||||||||||||||||| Sbjct: 139804 actactgtatactgtatattgcaa 139827
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccggcggggtcgacggcga 375 |||||||||||||||||||| Sbjct: 4346 gccggcggggtcgacggcga 4327
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcggggtcgacggcgaga 377 |||||||||||||||||||| Sbjct: 106661 cggcggggtcgacggcgaga 106680
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 tgctgccgccgcttgtgctc 424 |||||||||||||||||||| Sbjct: 526018 tgctgccgccgcttgtgctc 525999
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gagctccacgatgaggctgc 290 |||||||||||||||||||| Sbjct: 27283200 gagctccacgatgaggctgc 27283181
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 cgctgctgccgccgcttgtgctcgtgca 429 |||||||||||||||| |||||||||| Sbjct: 4118081 cgctgctgccgccgctgctgctcgtgca 4118054
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccggcggggtcgacggcga 375 |||||||||||||||||||| Sbjct: 40205394 gccggcggggtcgacggcga 40205375
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccggcggggtcgacggcga 375 |||||||||||||||||||| Sbjct: 148478 gccggcggggtcgacggcga 148459
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccggcggggtcgacggcga 375 |||||||||||||||||||| Sbjct: 71172 gccggcggggtcgacggcga 71153
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 atcgccgttcagggcgcgca 183 |||||||||||||||||||| Sbjct: 3106647 atcgccgttcagggcgcgca 3106628
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gctggaggtggccggcgggg 365 |||||||||||||||||||| Sbjct: 523823 gctggaggtggccggcgggg 523842
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 cgctgctgccgccgcttgtgctcgtgca 429 |||||||||||||||| |||||||||| Sbjct: 18609 cgctgctgccgccgctgctgctcgtgca 18582
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0016F11 Length = 134907 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgcaaaacttggtcgtcgtc 45 |||||||||||||||||||| Sbjct: 131523 tgcaaaacttggtcgtcgtc 131542
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gagctccacgatgaggctgc 290 |||||||||||||||||||| Sbjct: 140216 gagctccacgatgaggctgc 140197
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gagctccacgatgaggctgc 290 |||||||||||||||||||| Sbjct: 26027 gagctccacgatgaggctgc 26008
>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete sequences Length = 224098 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tggagttgcaagttacttta 66 |||||||||||||||||||| Sbjct: 58388 tggagttgcaagttacttta 58369
>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete sequences Length = 102671 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tggagttgcaagttacttta 66 |||||||||||||||||||| Sbjct: 95258 tggagttgcaagttacttta 95239
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgcaaaacttggtcgtcgtc 45 |||||||||||||||||||| Sbjct: 35270 tgcaaaacttggtcgtcgtc 35289
>dbj|AK108257.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A10, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 402 cgctgctgccgccgcttgtgctcgtgca 429 |||||||||||||||| |||||||||| Sbjct: 197 cgctgctgccgccgctgctgctcgtgca 224
>dbj|AK072270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008M11, full insert sequence Length = 3464 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggcggggtcgacggcgaga 377 |||||||||||||||||||| Sbjct: 155 cggcggggtcgacggcgaga 174
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gccggcggggtcgacggcga 375 |||||||||||||||||||| Sbjct: 463 gccggcggggtcgacggcga 444
>ref|NM_210155.1| Eremothecium gossypii AEL060Cp (AEL060C), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 tgctgccgccgcttgtgctc 424 |||||||||||||||||||| Sbjct: 341 tgctgccgccgcttgtgctc 360
>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20, complete sequence Length = 249791 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tacactacagtatactgtatattg 27 ||||||||||||||||||| |||| Sbjct: 118833 tacactacagtatactgtagattg 118810
>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tggagttgcaagttacttta 66 |||||||||||||||||||| Sbjct: 219491 tggagttgcaagttacttta 219472
>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15, complete sequence Length = 224998 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cactacagtatactgtatat 25 |||||||||||||||||||| Sbjct: 187040 cactacagtatactgtatat 187021
>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete sequence Length = 205436 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 accttcttggctatgtcacg 209 |||||||||||||||||||| Sbjct: 182806 accttcttggctatgtcacg 182825
>dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B35B20, telomere region, complete sequence Length = 67332 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tggagttgcaagttacttta 66 |||||||||||||||||||| Sbjct: 47294 tggagttgcaagttacttta 47275 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,717,930 Number of Sequences: 3902068 Number of extensions: 2717930 Number of successful extensions: 60207 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59405 Number of HSP's gapped (non-prelim): 797 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
